BAC Information

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BAC

Clone NameB6Ng01-017H22
Chromosome3 (Build37)
Map Location 117,550,562 - 117,677,718
singlet/doubletdoublet
Overlap geneSnx7, LOC100043260
Upstream geneFrrs1, Palmd, EG668749, 1700061I17Rik, LOC674908, D3Bwg0562e, 4833424O15Rik, EG668759
Downstream geneDpyd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017H22.bB6Ng01-017H22.g
ACCDH851164DH851165
length1,173901
definitionDH851164|Mus musculus domesticus DNA, BAC clone: B6Ng01-017H22, 5' end.DH851165|Mus musculus domesticus DNA, BAC clone: B6Ng01-017H22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,676,539 - 117,677,718)(117,550,562 - 117,551,459)
sequence
gaattccacattttctgttttcccagtaagtatctaaggatgtctaagta
tctaaggattccagttcccctcgatgaaatgttggtgctactttgagtat
catggatggcatcatctttttaggcttaaaaatgatattgatgtggtaga
caagatagtactaagttgatttccctttgatttccacaacgattttcacc
ctgtattttaagttgtttaaagtgctcctagaatgtaatacttaagatga
taaagcataatgtttaatgttttaatgggtgattttattgaattgtacca
tcctcatgtgttgctggcatagtgaaggttcttgcctaaatatacatcca
tattatcaagaaaggtcaggtagatctaaacattgttctgtagaatatca
ttattacctactcagtatgtaaaaaatatttattgcttctcaaatattag
catcttacctttaatttttaaactgagtaatatatatagattaagaaaaa
cttcagtctacatcctgatgtaattttaattgaatatgaattcaaaatta
gattgttgttggtgtttctatatagtatatttacatggacctgagcatgg
tttacatgcaaacatcactaattctccatagtataaatctaccacattaa
aaatgtcttacgtgtttaagcatttttatgtagagaaattctgagttttt
taaatgatggatcatataagccaatgtagtgaacatttgaaagtcgtaat
gactacaaattagattatcaagttatatttgaatagacaaatgagagtca
agggctgggttggacattttcatcagaaccttaaccacccatcagcattt
attgaacatttacaataatttacaaaaaaattatatgaataaaaatcacc
aaaggtgtgatgttctataattgtttcatcggctgaagaaataaactata
agtcctgggaaagtcaatgtaagccagattaaacagcagttcggtttgat
gggattatgttctggaaaccacctgatcacttatcatatgagaggccaga
agtttgaattactttttcatacctggtggaagaataccatggcacaattt
cctggtaacaatctaattaatgctttgtaagggcagtgaaattcagggag
tattttatgcattagacgtcaat
gaattcctttgctttgaatatctgcattctcaaacattcaatacagtatt
actaaaacacaaattgaaccttactcctgaatgtaatagtattaagaaac
aggattgagttatgaagctaaagtcttaataattagctttggcaatgcta
tcgtgagactggcagggagggcactaactaaccatttttctactttgttt
tcacctgtgaggaaatagaaaatataaaattaaaataaaacaaaacacaa
ccacagaagcagagtagtcctgccaaagtaccaaacatgccaggcatgat
ttgagtcaagtaataaagggctcacattttatggttaatcgggtacacaa
aaataaagaaacaagaaattccctgaaatgaaagtttaattagatagata
attttcacctctatgataggataaaataaattgtacctagatgacaggtt
tctattcctgcacaaacatcatggccaagaagcaagttggggaggaaagg
gtttattcagcttacacttccacattgctgttcatcaccaaaggaagtta
ggactgtaactcaagcagggcaggaagcaggagctgatatagaggccatg
gagggatgttacttattggtttgcttcccctggcttgctcagcctgcttt
cttatagaacccaagactcccaggccagggatggcaccacccacaatggg
ctaggccctccaccccgccttgatcactaattgagaaaatgtcttacagc
tgggatctcgtggaaagcatttccttaactgaggctctttttctctgtga
taactccagcctgtgtcaatttgacacacaaaaccagccagtgcaaaaat
aaaatgaatcaaaaataaggctctgtatgtttttaacatctattttattt
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_117676539_117677718
seq2: B6Ng01-017H22.b_46_1218 (reverse)

seq1  ATTGACGTCAATGGTATAAATTACTCTCTTGATTTTCATTTGCCTTACAA  50
      ||||||||| |  | ||||| ||||| | ||| ||||| |  ||||||||
seq2  ATTGACGTCTAATGCATAAAATACTC-CCTGAATTTCACTGCCCTTACAA  49

seq1  AGCCTTTAATTAGATTTGTTCTCCAGG-AATTGTTGCATAGTATTCTTCC  99
      || | ||||||||| |||||  ||||| ||||||  ||| ||||||||||
seq2  AG-CATTAATTAGA-TTGTT-ACCAGGAAATTGTGCCATGGTATTCTTCC  96

seq1  A-CAGGTATGAAAAAGTATATTC-AACTTCTGGCCTCTTCATATGATAAG  147
      | |||||||||||||||| |||| ||||||||||||| ||||||||||||
seq2  ACCAGGTATGAAAAAGTA-ATTCAAACTTCTGGCCTC-TCATATGATAAG  144

seq1  TGATCAGGTGGTTCTCCAGAACATATATCCCATCAAACCGAACTGCTGTT  197
      ||||||||||||| ||||||||||| ||||||||||||||||||||||||
seq2  TGATCAGGTGGTT-TCCAGAACATA-ATCCCATCAAACCGAACTGCTGTT  192

seq1  TAAATCTTGCCTTACCATTGACTTT-CCAGGACTTTATAGTTTATTTTCT  246
      | |||| || |||| |||||||||| ||||||| |||||||||||||  |
seq2  T-AATC-TGGCTTA-CATTGACTTTCCCAGGAC-TTATAGTTTATTTCTT  238

seq1  CAGCCGATTGAAAC-ATTATAGAACATCACACCTTTGGTGATTTTTATTC  295
      ||||||| |||||| |||||||||||||||||||||||||||||||||||
seq2  CAGCCGA-TGAAACAATTATAGAACATCACACCTTTGGTGATTTTTATTC  287

seq1  ATATAATTTTTTTGTAAATTATTGTAAATGTTCAATAAATGCTGATGGGT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATTTTTTTGTAAATTATTGTAAATGTTCAATAAATGCTGATGGGT  337

seq1  GGTTTAAGGTTCTGATG-AAATGTCCAACCCAGCCCTTGACTCTCATTTG  394
      || |||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GG-TTAAGGTTCTGATGAAAATGTCCAACCCAGCCCTTGACTCTCATTTG  386

seq1  TCTATTCAAATATAACTTGATAATCTAATTTGTAGTCATTACGACTTTCA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTCAAATATAACTTGATAATCTAATTTGTAGTCATTACGACTTTCA  436

seq1  AATGTTCACTACATTGGCTTATATGATCCATCATTT-AAAAACTCAGAAT  493
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AATGTTCACTACATTGGCTTATATGATCCATCATTTAAAAAACTCAGAAT  486

seq1  TTCTCTACATAAAAATGCTTAAACACGTAAGACATTTTTAATGTGGTAGA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTACATAAAAATGCTTAAACACGTAAGACATTTTTAATGTGGTAGA  536

seq1  TTTATACTATGGAGAATTAGTGATGTTTGCATGTAAACCATGCTCAGGTC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATACTATGGAGAATTAGTGATGTTTGCATGTAAACCATGCTCAGGTC  586

seq1  CATGTAAATATACTATATAGAAACACCAACAACAATCTAATTTTGAATTC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAAATATACTATATAGAAACACCAACAACAATCTAATTTTGAATTC  636

seq1  ATATTCAATTAAAATTACATCAGGATGTAGACTGAAGTTTTTCTTAATCT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCAATTAAAATTACATCAGGATGTAGACTGAAGTTTTTCTTAATCT  686

seq1  ATATATATTACTCAGTTTAAAAATTAAAGGTAAGATGCTAATATTTGAGA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATTACTCAGTTTAAAAATTAAAGGTAAGATGCTAATATTTGAGA  736

seq1  AGCAATAAATATTTTTTACATACTGAGTAGGTAATAATGATATTCTACAG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATAAATATTTTTTACATACTGAGTAGGTAATAATGATATTCTACAG  786

seq1  AACAATGTTTAGATCTACCTGACCTTTCTTGATAATATGGATGTATATTT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGTTTAGATCTACCTGACCTTTCTTGATAATATGGATGTATATTT  836

seq1  AGGCAAGAACCTTCACTATGCCAGCAACACATGAGGATGGTACAATTCAA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGAACCTTCACTATGCCAGCAACACATGAGGATGGTACAATTCAA  886

seq1  TAAAATCACCCATTAAAACATTAAACATTATGCTTTATCATCTTAAGTAT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCACCCATTAAAACATTAAACATTATGCTTTATCATCTTAAGTAT  936

seq1  TACATTCTAGGAGCACTTTAAACAACTTAAAATACAGGGTGAAAATCGTT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTCTAGGAGCACTTTAAACAACTTAAAATACAGGGTGAAAATCGTT  986

seq1  GTGGAAATCAAAGGGAAATCAACTTAGTACTATCTTGTCTACCACATCAA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAATCAAAGGGAAATCAACTTAGTACTATCTTGTCTACCACATCAA  1036

seq1  TATCATTTTTAAGCCTAAAAAGATGATGCCATCCATGATACTCAAAGTAG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATTTTTAAGCCTAAAAAGATGATGCCATCCATGATACTCAAAGTAG  1086

seq1  CACCAACATTTCATCGAGGGGAACTGGAATCCTTAGATACTTAGACATCC  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAACATTTCATCGAGGGGAACTGGAATCCTTAGATACTTAGACATCC  1136

seq1  TTAGATACTTACTGGGAAAACAGAAAATGTGGAATTC  1180
      |||||||||||||||||||||||||||||||||||||
seq2  TTAGATACTTACTGGGAAAACAGAAAATGTGGAATTC  1173

seq1: chr3_117550562_117551459
seq2: B6Ng01-017H22.g_69_969

seq1  GAATTCCTTTGCTTTGAATATCTGCATTCTCAAACATTCAATACAGTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTGCTTTGAATATCTGCATTCTCAAACATTCAATACAGTATT  50

seq1  ACTAAAACACAAATTGAACCTTACTCCTGAATGTAATAGTATTAAGAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAACACAAATTGAACCTTACTCCTGAATGTAATAGTATTAAGAAAC  100

seq1  AGGATTGAGTTATGAAGCTAAAGTCTTAATAATTAGCTTTGGCAATGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTGAGTTATGAAGCTAAAGTCTTAATAATTAGCTTTGGCAATGCTA  150

seq1  TCGTGAGACTGGCAGGGAGGGCACTAACTAACCATTTTTCTACTTTGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGAGACTGGCAGGGAGGGCACTAACTAACCATTTTTCTACTTTGTTT  200

seq1  TCACCTGTGAGGAAATAGAAAATATAAAATTAAAATAAAACAAAACACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTGTGAGGAAATAGAAAATATAAAATTAAAATAAAACAAAACACAA  250

seq1  CCACAGAAGCAGAGTAGTCCTGCCAAAGTACCAAACATGCCAGGCATGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGAAGCAGAGTAGTCCTGCCAAAGTACCAAACATGCCAGGCATGAT  300

seq1  TTGAGTCAAGTAATAAAGGGCTCACATTTTATGGTTAATCGGGTACACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTCAAGTAATAAAGGGCTCACATTTTATGGTTAATCGGGTACACAA  350

seq1  AAATAAAGAAACAAGAAATTCCCTGAAATGAAAGTTTAATTAGATAGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAGAAACAAGAAATTCCCTGAAATGAAAGTTTAATTAGATAGATA  400

seq1  ATTTTCACCTCTATGATAGGATAAAATAAATTGTACCTAGATGACAGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCACCTCTATGATAGGATAAAATAAATTGTACCTAGATGACAGGTT  450

seq1  TCTATTCCTGCACAAACATCATGGCCAAGAAGCAAGTTGGGGAGGAAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTCCTGCACAAACATCATGGCCAAGAAGCAAGTTGGGGAGGAAAGG  500

seq1  GTTTATTCAGCTTACACTTCCACATTGCTGTTCATCACCAAAGGAAGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTCAGCTTACACTTCCACATTGCTGTTCATCACCAAAGGAAGTTA  550

seq1  GGACTGTAACTCAAGCAGGGCAGGAAGCAGGAGCTGATATAGAGGCCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGTAACTCAAGCAGGGCAGGAAGCAGGAGCTGATATAGAGGCCATG  600

seq1  GAGGGATGTTACTTATTGGTTTGCTTCCCCTGGCTTGCTCAGCCTGCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGATGTTACTTATTGGTTTGCTTCCCCTGGCTTGCTCAGCCTGCTTT  650

seq1  CTTATAGAACCCAAGACTCCCAGGCCAGGGATGGCACCACCCACAATGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAGAACCCAAGACTCCCAGGCCAGGGATGGCACCACCCACAATGGG  700

seq1  CTAGGCCCTCCACCCCGCCTTGATCACTAATTGAGAAAATGTCTTACAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCCCTCCACCCCGCCTTGATCACTAATTGAGAAAATGTCTTACAGC  750

seq1  T-GGATCTCGTGG-AAGCATTTCCTTAACTGAGGCTC-CTTTCTCTGTGA  797
      | ||||||||||| |||||||||||||||||||||||  |||||||||||
seq2  TGGGATCTCGTGGAAAGCATTTCCTTAACTGAGGCTCTTTTTCTCTGTGA  800

seq1  TAACTCCAGCCTGTGTCAATTTGACACACAAAACCAGCCAGTGCAAAAAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCCAGCCTGTGTCAATTTGACACACAAAACCAGCCAGTGCAAAAAT  850

seq1  AAAATG-ATCCAAAATAATGCTCTGTATGTTTTTAACATCTATTTTTATT  896
      |||||| ||| ||||||| ||||||||||||||||||||||| |||||||
seq2  AAAATGAATCAAAAATAAGGCTCTGTATGTTTTTAACATCTA-TTTTATT  899

seq1  TT  898
      ||
seq2  TT  901