BAC Information

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BAC

Clone NameB6Ng01-017K24
Chromosome3 (Build37)
Map Location 57,295,345 - 57,430,428
singlet/doubletdoublet
Overlap geneWwtr1
Upstream geneLOC100040139, LOC666585, Tm4sf1, LOC383862, Tm4sf4
Downstream geneCommd2, Gm410, EG623114, Rnf13, LOC675537, Pfn2, EG433594, LOC100040216, 4921539H07Rik, Tsc22d2, D3Ucla1, Eif2a, 2810407C02Rik, 4932431H17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017K24.bB6Ng01-017K24.g
ACCDH851298DH851299
length1,0981,061
definitionDH851298|Mus musculus domesticus DNA, BAC clone: B6Ng01-017K24, 5' end.DH851299|Mus musculus domesticus DNA, BAC clone: B6Ng01-017K24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,295,345 - 57,296,452)(57,429,362 - 57,430,428)
sequence
gaattcaataacagactttaataggctaaagttaaacttatctatgcaga
tagctatacaatgtattggttgttatgtaaattgtatcaggtaaatacgc
tgagaagcctaactgaaccacgctggatattatcttttgatgatcattca
tcccacgggcatcgccatgtctctgcgcacacctcactgactgaagatgg
aaatgcttttcctcagagctcattctccatactgaatattaaatgcactg
cagccagggacccagcaactctgtccccacccccaaatctctcaaccaaa
atgataaaagttaacatccccagtccatggtgtgcctcttaaggtcacgt
gacaataacacatccctgttgcttcctgccaaacgagtttaacagtatga
ccaacacctaagtcataggaagcatgagacagatgcaaagttaaaggtcg
tcgaccaaatcactggcctatagtcttaaaaaaaaaaagccgggggcatg
gtggcacactctaatcccagcactcagcactcgggaggcagaggcaggca
gatttctgagttcgaggccagcctgttctacaaagtgaattccaggacag
ccagggctacacagagaaaccctgtctccaaaaaaaaaaaaaaaaaaaaa
aaaagtcaaggtccaaaaaaactagaattgaagaatcactccaggttaaa
agaatttaatgacaggctggggatacagctcaatgataaagcatttgcat
agcatgacttgggccctgggtttgattctagccccagaaagaaaagggag
aaaggagaggagaaaactaagcaaaacacgtgttagcaaaacacaaaacc
catatggactacacgttaaatacagaacagtatcagtggtggggtcccct
gattttgatacccatactctgctcagaaaaaccatctaaagtgctaaaaa
tatttacagttacaatcatggtgtctccagttttaccttccaccataagg
aagagctagagggtagcaagtgggagctagctgtagatcttccaggccct
ggttaccttcagcaacccaaacaaacctttgttacctccggtgtgtgg
gaattccaggccagtcaaagctacacagggagaccctgtttcaaagtaaa
taaataaaataaaataaaattccaagttgaatgtagtgattatgagggga
aaaaaagagagaaaagaaaaaagtcaccagtcaaccactgccaaagcctt
tttagttttgattatcctacagacccctcgatagccggggcctggtaact
ttatcatgtccacacagggacaatgagagaacagaatgattattttctga
catatttgggttaatatttcagtagttaaaaccatttccttaataggtag
tctgggggcataattttatgtgaatcctagccttaatgacatggcgattt
tttttttttaatttcaaaattggggatgtttctacacggtggtttgaaac
ctaagaaaaaggaatgtgccaaagtattgtttgtgacttagaaaatgtct
gatttcacaagctattattgacctgtctttaaggtttacgtacatgcctt
tccagatgtatgaagttttatttctgtacttcagctgacggtattttcat
tatcccctttccatacataatcaggcaattacagcctcacggttagcttt
cctcttgtccttcgctccttaaacaccagagggcgcacgtccttaagtat
cactttgtgggacctttcactccaaaatttgtcttctggatttgttccag
aaccaacttgagggaacacttaactgggccattgctaacgacccaaagcc
tttcctggtggctgccttaactcatcgctggaccctagggacagagagtt
aaggtcagtcgggagaaagcccctctttatcaatcaaacttaaacagcgt
agtccttaacagaggtaagagatcagcccagcatctgttcttgctgattt
ttctttgtgttcggctaaatacagagcgtctcaaagctaacgaagcaagc
tggaacgacgctgcgtgcaaaaagaaaggagcagagcgcatgtaatacaa
agtgctcaggggggggacgtttaacagcccaccttcctggcaatcggcag
tcagtaatctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_57295345_57296452
seq2: B6Ng01-017K24.b_44_1141

seq1  GAATTCAATAACAGACTTTAATAGGCTAAAGTTAAACTTATCTATGCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAACAGACTTTAATAGGCTAAAGTTAAACTTATCTATGCAGA  50

seq1  TAGCTATACAATGTATTGGTTGTTATGTAAATTGTATCAGGTAAATACGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTATACAATGTATTGGTTGTTATGTAAATTGTATCAGGTAAATACGC  100

seq1  TGAGAAGCCTAACTGAACCACGCTGGATATTATCTTTTGATGATCATTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGCCTAACTGAACCACGCTGGATATTATCTTTTGATGATCATTCA  150

seq1  TCCCACGGGCATCGCCATGTCTCTGCGCACACCTCACTGACTGAAGATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACGGGCATCGCCATGTCTCTGCGCACACCTCACTGACTGAAGATGG  200

seq1  AAATGCTTTTCCTCAGAGCTCATTCTCCATACTGAATATTAAATGCACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTTTTCCTCAGAGCTCATTCTCCATACTGAATATTAAATGCACTG  250

seq1  CAGCCAGGGACCCAGCAACTCTGTCCCCACCCCCAAATCTCTCAACCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGGGACCCAGCAACTCTGTCCCCACCCCCAAATCTCTCAACCAAA  300

seq1  ATGATAAAAGTTAACATCCCCAGTCCATGGTGTGCCTCTTAAGGTCACGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAAAAGTTAACATCCCCAGTCCATGGTGTGCCTCTTAAGGTCACGT  350

seq1  GACAATAACACATCCCTGTTGCTTCCTGCCAAACGAGTTTAACAGTATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATAACACATCCCTGTTGCTTCCTGCCAAACGAGTTTAACAGTATGA  400

seq1  CCAACACCTAAGTCATAGGAAGCATGAGACAGATGCAAAGTTAAAGGTCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACACCTAAGTCATAGGAAGCATGAGACAGATGCAAAGTTAAAGGTCG  450

seq1  TCGACCAAATCACTGGCCTATAGTCTTAAAAAAAAAAAGCCGGGGGCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGACCAAATCACTGGCCTATAGTCTTAAAAAAAAAAAGCCGGGGGCATG  500

seq1  GTGGCACACTCTAATCCCAGCACTCAGCACTCGGGAGGCAGAGGCAGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCACACTCTAATCCCAGCACTCAGCACTCGGGAGGCAGAGGCAGGCA  550

seq1  GATTTCTGAGTTCGAGGCCAGCCTGTTCTACAAAGTGAATTCCAGGACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTGAGTTCGAGGCCAGCCTGTTCTACAAAGTGAATTCCAGGACAG  600

seq1  CCAGGGCTACACAGAGAAACCCTGTCTCCAAAAAAAAAAAAAAAAAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCTACACAGAGAAACCCTGTCTCCAAAAAAAAAAAAAAAAAAAAA  650

seq1  AAAAGTCAAGGTCCAAAAAAACTAGAATTGAAGAATCACTCCAGGTTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCAAGGTCCAAAAAAACTAGAATTGAAGAATCACTCCAGGTTAAA  700

seq1  AGAATTTAATGACAGGCTGGGGATACAGCTCAATGATAAAGCATTTGCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTAATGACAGGCTGGGGATACAGCTCAATGATAAAGCATTTGCAT  750

seq1  AGCATGACTTGGGCCCTGGGTTTGATTCTAGCCCCAGAAAGAAAAGGGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGACTTGGGCCCTGGGTTTGATTCTAGCCCCAGAAAGAAAAGGGAG  800

seq1  AAAGGAGAGGAGAAAACTAAGCAAAACACGTGTTAGCAAAACACAAAACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGAGGAGAAAACTAAGCAAAACACGTGTTAGCAAAACACAAAACC  850

seq1  CATATGGACTACACGTTAAATACAGAACAGTATCAGTGGTGGGGTCCCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGGACTACACGTTAAATACAGAACAGTATCAGTGGTGGGGTCCCCT  900

seq1  GATTTTGATACCCATACTCTGCTCAGAAAACACAATCTAAAGTGCTATAA  950
      |||||||||||||||||||||||||||||| || ||||||||||||| ||
seq2  GATTTTGATACCCATACTCTGCTCAGAAAA-ACCATCTAAAGTGCTAAAA  949

seq1  ATATTTACAGTTACAAATCATGGTGTCTCCAGTTTTACCTTCCACCATTA  1000
      |||||||||||||| |||||||||||||||||||||||||||||||| ||
seq2  ATATTTACAGTTAC-AATCATGGTGTCTCCAGTTTTACCTTCCACCA-TA  997

seq1  AGGAAAGAGCTAGAGGGGTAGCAAAGTGGGAGGCTAGCTGTAGAATCTTC  1050
      ||| |||||||||| ||||||| |||||||| ||||||||||| ||||||
seq2  AGG-AAGAGCTAGA-GGGTAGC-AAGTGGGA-GCTAGCTGTAG-ATCTTC  1042

seq1  CAGGCCCTGGGTTTAATCTTCAGCAACACAAACAAAACTTTGTTA-CTAC  1099
      ||||||||||   | | |||||||||| |||||||| |||||||| || |
seq2  CAGGCCCTGG---TTACCTTCAGCAACCCAAACAAACCTTTGTTACCTCC  1089

seq1  GGTGTGTGG  1108
      |||||||||
seq2  GGTGTGTGG  1098

seq1: chr3_57429362_57430428
seq2: B6Ng01-017K24.g_68_1128 (reverse)

seq1  CAGATTACTGACTCGCCGATTTGGCAGGAGCGTGGGCTTGTTAACGTCCC  50
      ||||||||||||| ||||| ||| |||||  |||||||  | ||||||||
seq2  CAGATTACTGACT-GCCGA-TTGCCAGGAAGGTGGGCTGTTAAACGTCCC  48

seq1  CCACCCTGAGCACTTTGTAATTACATGCCGCTCTGCTCCTTTTCTTTTGC  100
      || ||||||||||||||| |||||||| ||||||||||||||  ||||||
seq2  CC-CCCTGAGCACTTTGT-ATTACATG-CGCTCTGCTCCTTTCTTTTTGC  95

seq1  ACGCAGCGTCGTTCCAGCTTGCTTCGTTAGCTTTGAAGACGCTCTGTATT  150
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACGCAGCGTCGTTCCAGCTTGCTTCGTTAGCTTTG-AGACGCTCTGTATT  144

seq1  TAGCCGAACACAAAGAAAAATCAGCAAGAACAGATGCTGGGCTGATCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCGAACACAAAGAAAAATCAGCAAGAACAGATGCTGGGCTGATCTCT  194

seq1  TACCTCTGTTAAGGACTACGCTGTTTAAGTTTGATTGATAAAGAGGGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCTGTTAAGGACTACGCTGTTTAAGTTTGATTGATAAAGAGGGGCT  244

seq1  TTCTCCCGACTGACCTTAACTCTCTGTCCCTAGGGTCCAGCGATGAGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCGACTGACCTTAACTCTCTGTCCCTAGGGTCCAGCGATGAGTTA  294

seq1  AGGCAGCCACCAGGAAAGGCTTTGGGTCGTTAGCAATGGCCCAGTTAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGCCACCAGGAAAGGCTTTGGGTCGTTAGCAATGGCCCAGTTAAGT  344

seq1  GTTCCCTCAAGTTGGTTCTGGAACAAATCCAGAAGACAAATTTTGGAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCTCAAGTTGGTTCTGGAACAAATCCAGAAGACAAATTTTGGAGTG  394

seq1  AAAGGTCCCACAAAGTGATACTTAAGGACGTGCGCCCTCTGGTGTTTAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTCCCACAAAGTGATACTTAAGGACGTGCGCCCTCTGGTGTTTAAG  444

seq1  GAGCGAAGGACAAGAGGAAAGCTAACTGTGAGGCTGTAATTGCCTGATTA  500
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GAGCGAAGGACAAGAGGAAAGCTAACCGTGAGGCTGTAATTGCCTGATTA  494

seq1  TGTATGGAAAGGGGATAATGAAAATACCGTCAGCTGAAGTACAGAAATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGGAAAGGGGATAATGAAAATACCGTCAGCTGAAGTACAGAAATAA  544

seq1  AACTTCATACATCTGGAAAGGCATGTACGTAAACCTTAAAGACAGGTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCATACATCTGGAAAGGCATGTACGTAAACCTTAAAGACAGGTCAA  594

seq1  TAATAGCTTGTGAAATCAGACATTTTCTAAGTCACAAACAATACTTTGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGCTTGTGAAATCAGACATTTTCTAAGTCACAAACAATACTTTGGC  644

seq1  ACATTCCTTTTTCTTAGGTTTCAAACCACCGTGTAGAAACATCCCCAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCCTTTTTCTTAGGTTTCAAACCACCGTGTAGAAACATCCCCAATT  694

seq1  TTGAAATTAAAAAAAAAAAATCGCCATGTCATTAAGGCTAGGATTCACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATTAAAAAAAAAAAATCGCCATGTCATTAAGGCTAGGATTCACAT  744

seq1  AAAATTATGCCCCCAGACTACCTATTAAGGAAATGGTTTTAACTACTGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTATGCCCCCAGACTACCTATTAAGGAAATGGTTTTAACTACTGAA  794

seq1  ATATTAACCCAAATATGTCAGAAAATAATCATTCTGTTCTCTCATTGTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAACCCAAATATGTCAGAAAATAATCATTCTGTTCTCTCATTGTCC  844

seq1  CTGTGTGGACATGATAAAGTTACCAGGCCCCGGCTATCGAGGGGTCTGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGGACATGATAAAGTTACCAGGCCCCGGCTATCGAGGGGTCTGTA  894

seq1  GGATAATCAAAACTAAAAAGGCTTTGGCAGTGGTTGACTGGTGACTTTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAATCAAAACTAAAAAGGCTTTGGCAGTGGTTGACTGGTGACTTTTT  944

seq1  TCTTTTCTCTCTTTTTTTCCCCTCATAATCACTACATTCAACTTGGAATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTCTCTTTTTTTCCCCTCATAATCACTACATTCAACTTGGAATT  994

seq1  TTATTTTATTTTATTTATTTACTTTGAAACAGGGTCTCCCTGTGTAGCTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTATTTTATTTATTTACTTTGAAACAGGGTCTCCCTGTGTAGCTT  1044

seq1  TGACTGGCCTGGAATTC  1067
      |||||||||||||||||
seq2  TGACTGGCCTGGAATTC  1061