BAC Information

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BAC

Clone NameB6Ng01-017P14
Chromosome3 (Build37)
Map Location 68,928,110 - 69,099,636
singlet/doubletdoublet
Overlap geneKpna4, Arl14
Upstream geneEG545531, LOC631379, Schip1, Il12a, LOC639530, 1110032F04Rik, Ift80, Smc4, Trim59, LOC667272
Downstream genePpm1l, LOC667309, B3galnt1, Rpl32-ps, Nmd3, LOC100041334, 1110032A04Rik, Gm414
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017P14.bB6Ng01-017P14.g
ACCDH851503DH851504
length1,062455
definitionDH851503|Mus musculus domesticus DNA, BAC clone: B6Ng01-017P14, 5' end.DH851504|Mus musculus domesticus DNA, BAC clone: B6Ng01-017P14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,098,572 - 69,099,636)(68,928,110 - 68,928,570)
sequence
gaattccactcacgtcgtaaatgttttttcctgtcttaccacttacccat
gtgttgtttatgatactctgaaatataacaaatttgatttgatttgattt
ttagagtgatatattcctccagctactttttgccacccttctgaagatac
tgcaggttatagtctgtttagtcattacttcagctgttatcaaattcact
ggtcactctggacaaaaatgtcaggcactgggctaggaacaaacaagcag
gacccaatgccttacctgcaaagaatctgtactgagaatggtgggccttt
gatgaataatcacttctgagtatacaacttcacactgacaaatgctgtta
tcatgcagacatgcagagtacagtttgtatactgactggcatgcaggcgt
gcagagtacagtttgtatactgactggcatgcaggcatgcagagtacagt
ttgtatggtgaatggttcaaggttgcccagtcgtggaatctgctaaggag
tcagcagccctttgctaacagaagctatcattcttgggtttgtcctttga
atgcacatcactgcctccaccctgttctcttgttcttccatcccagaatc
acaacttgcatctatctccccactcaaagcaaactgcatgcctatcagaa
tgtcgaagacgaaaacaagaccaaatgctggaggggatgcacagtaattc
ccatcacagaaaaaaaattccaatgtttatagatgtttaattcataattt
tcaaatcttggaagcaaccacgacatctcttttttaggtttaagtatgtt
ttattttatgtgtacgcatattttttgccttcgtgtatgtgtgctcatca
taagcgtgtctggtggccatggaggccagaagagagcatcggttcctgga
actgtagcgacagctggttggtgaactgccatgtgtatctcgggaatcaa
cccaagatctctggaagaatagccagtgcccttaaccactgagccatccc
tctagccccaagtgttcttaagtagttgaatacctagtatctcaggtaaa
ttggagtatttc
agtcattagtagtggctacagatatgatctcaaaatacatctaatatgca
tttatagataatttaaaatcacctatcatagtagccaggttgattcagta
ttaatttattagtctatagtggcaagaaatacagagtaagggtaaattac
atttttgtttgttttttgtttttaagataacttaaaacagggtggtggca
catgcttgcaatcccacaactagagagagggaagcagggataatgccagt
aaaagatagtgttcaggaggatgagggagagaggttgagagtgcaaggct
ctcctaggctacaagtacataatgagaccttgtccaaaagaaaagaacaa
gaggggtggaaagggagaaagtaagtctggcaaccctataaaaagttaga
tgcaaagttccagtattacctagcattctaggtttgtagccaatagaagt
aagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_69098572_69099636
seq2: B6Ng01-017P14.b_50_1111 (reverse)

seq1  GAAATACTCCATTTTACTGGAGATACTAGGTTATTCAACTACTAAAGAAC  50
      ||||||||||| |||||  ||||||||||| |||||||||||| ||||||
seq2  GAAATACTCCAATTTACCTGAGATACTAGG-TATTCAACTACTTAAGAAC  49

seq1  ACCTTGGGGGCTAGAGGGATGGCTCAGTGGTTAAGGGCACTGGCTATTCT  100
      ||  | ||||||||||||||||||||||||||||||||||||||||||||
seq2  AC--TTGGGGCTAGAGGGATGGCTCAGTGGTTAAGGGCACTGGCTATTCT  97

seq1  TCCAGAGGATCTGGGTTTGATTCCCGAGATACACATGGCAGTTCA-CAAC  149
      |||||| ||||| || ||||||||||||||||||||||||||||| ||||
seq2  TCCAGA-GATCTTGGGTTGATTCCCGAGATACACATGGCAGTTCACCAAC  146

seq1  CAGCTGTCGCTACAGTTCCAGGAACCTGATGCTCTCTTCTGGCCTCCATG  199
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CAGCTGTCGCTACAGTTCCAGGAACC-GATGCTCTCTTCTGGCCTCCATG  195

seq1  GCCACCAGACACGCTTATGATGAGCACACATACACGAAGGCAAAAAATAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCAGACACGCTTATGATGAGCACACATACACGAAGGCAAAAAATAT  245

seq1  GCGTACACATAAAATAAAACATACTTAAACCTAAAAAAGAGATGTCGTGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTACACATAAAATAAAACATACTTAAACCTAAAAAAGAGATGTCGTGG  295

seq1  TTGCTTCCAAGATTTGAAAATTATGAATTAAACATCTATAAACATTGGAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCCAAGATTTGAAAATTATGAATTAAACATCTATAAACATTGGAA  345

seq1  -TTTTTTTCTGTGATGGGAATTACTGTGCATCCCCTCCAGCATTTGGTCT  398
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCTGTGATGGGAATTACTGTGCATCCCCTCCAGCATTTGGTCT  395

seq1  TGTTTTCGTCTTCGACATTCTGATAGGCATGCAGTTTGCTTTGAGTGGGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCGTCTTCGACATTCTGATAGGCATGCAGTTTGCTTTGAGTGGGG  445

seq1  AGATAGATGCAAGTTGTGATTCTGGGATGGAAGAACAAGAGAACAGGGTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGATGCAAGTTGTGATTCTGGGATGGAAGAACAAGAGAACAGGGTG  495

seq1  GAGGCAGTGATGTGCATTCAAAGGACAAACCCAAGAATGATAGCTTCTGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGTGATGTGCATTCAAAGGACAAACCCAAGAATGATAGCTTCTGT  545

seq1  TAGCAAAGGGCTGCTGACTCCTTAGCAGATTCCACGACTGGGCAACCTTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAAGGGCTGCTGACTCCTTAGCAGATTCCACGACTGGGCAACCTTG  595

seq1  AACCATTCACCATACAAACTGTACTCTGCATGCCTGCATGCCAGTCAGTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATTCACCATACAAACTGTACTCTGCATGCCTGCATGCCAGTCAGTA  645

seq1  TACAAACTGTACTCTGCACGCCTGCATGCCAGTCAGTATACAAACTGTAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAACTGTACTCTGCACGCCTGCATGCCAGTCAGTATACAAACTGTAC  695

seq1  TCTGCATGTCTGCATGATAACAGCATTTGTCAGTGTGAAGTTGTATACTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATGTCTGCATGATAACAGCATTTGTCAGTGTGAAGTTGTATACTC  745

seq1  AGAAGTGATTATTCATCAAAGGCCCACCATTCTCAGTACAGATTCTTTGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTGATTATTCATCAAAGGCCCACCATTCTCAGTACAGATTCTTTGC  795

seq1  AGGTAAGGCATTGGGTCCTGCTTGTTTGTTCCTAGCCCAGTGCCTGACAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAGGCATTGGGTCCTGCTTGTTTGTTCCTAGCCCAGTGCCTGACAT  845

seq1  TTTTGTCCAGAGTGACCAGTGAATTTGATAACAGCTGAAGTAATGACTAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCCAGAGTGACCAGTGAATTTGATAACAGCTGAAGTAATGACTAA  895

seq1  ACAGACTATAACCTGCAGTATCTTCAGAAGGGTGGCAAAAAGTAGCTGGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACTATAACCTGCAGTATCTTCAGAAGGGTGGCAAAAAGTAGCTGGA  945

seq1  GGAATATATCACTCTAAAAATCAAATCAAATCAAATTTGTTATATTTCAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATATATCACTCTAAAAATCAAATCAAATCAAATTTGTTATATTTCAG  995

seq1  AGTATCATAAACAACACATGGGTAAGTGGTAAGACAGGAAAAAACATTTA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCATAAACAACACATGGGTAAGTGGTAAGACAGGAAAAAACATTTA  1045

seq1  CGACGTGAGTGGAATTC  1065
      |||||||||||||||||
seq2  CGACGTGAGTGGAATTC  1062

seq1: chr3_68928110_68928570
seq2: B6Ng01-017P14.g_67_527

seq1  GAATTCAGTCATTAGTAGTGGCTACAGATATGATCTCAAAATACATCTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCATTAGTAGTGGCTACAGATATGATCTCAAAATACATCTAA  50

seq1  TATGCATTTATAGATAATTTAAAATCACCTATCATAGTAGCCAGGTTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCATTTATAGATAATTTAAAATCACCTATCATAGTAGCCAGGTTGAT  100

seq1  TCAGTATTAATTTATTAGTCTATAGTGGCAAGAAATACAGAGTAAGGGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTATTAATTTATTAGTCTATAGTGGCAAGAAATACAGAGTAAGGGTA  150

seq1  AATTACATTTTTGTTTGTTTTTTGTTTTTAAGATAACTTAAAACAGGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACATTTTTGTTTGTTTTTTGTTTTTAAGATAACTTAAAACAGGGTG  200

seq1  GTGGCACATGCTTGCAATCCCACAACTAGAGAGAGGGAAGCAGGGATAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCACATGCTTGCAATCCCACAACTAGAGAGAGGGAAGCAGGGATAAT  250

seq1  GCCAGTAAAAGATAGTGTTCAGGAGGATGAGGGAGAGAGGTTGAGAGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTAAAAGATAGTGTTCAGGAGGATGAGGGAGAGAGGTTGAGAGTGC  300

seq1  AAGGCTCTCCTAGGCTACAAGTACATAATGAGACCTTGTCCAAAAGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTCTCCTAGGCTACAAGTACATAATGAGACCTTGTCCAAAAGAAAA  350

seq1  GAACAAGAGGGGTGGAAAGGGAGAAAGTAAGTCTGGCAACCCTATAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAGAGGGGTGGAAAGGGAGAAAGTAAGTCTGGCAACCCTATAAAAA  400

seq1  GTTAGATGCAAAGTTCCAGTATTACCTAGCATTCTAGGTTTGTAGCCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTTAGATGCAAAGTTCCAGTATTACCTAGCATTCTAGGTTTGTAGCCAAT  450

seq1  AGAAGTAAGAC  461
      |||||||||||
seq2  AGAAGTAAGAC  461