BAC Information

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BAC

Clone NameB6Ng01-017P16
Chromosome3 (Build37)3 (Build37)
Map Location 41,058,867 - 41,059,395133,210,807 - 133,211,579
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017P16.bB6Ng01-017P16.g
ACCDH851505DH851506
length876779
definitionDH851505|Mus musculus domesticus DNA, BAC clone: B6Ng01-017P16, 5' end.DH851506|Mus musculus domesticus DNA, BAC clone: B6Ng01-017P16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,058,867 - 41,059,395)(133,210,807 - 133,211,579)
sequence
ggaattctttgtttagctctgagccccattttttaatggggttatttgat
tttctggagtccaccttcttgagttctttatatatatattggatattagt
cctctatctgatttaggataggtaaagatcctttcccaatctgttggtgg
cctttttgtcttattgacggtgtcttttgccttacagaagctttgcagtt
tcatgaggtcccatttgtcgattctctatcttacagcacaagccattgct
gttctgttcaggaattttcccctgtgccaatatcttcgagccttttcccc
actttctcctctacaagtttcaatgtctctggttttatgtggagctcctt
gatccacttagatttgaccttagtacaaggagataggaatggatcaattc
gcattcttctacatgataaccaccagttgtgccagcaccatttgttgaaa
atgccgtcttttttccactggatggtttttgctcccttgtcaaagatcaa
gtgaccataggagtgtgggttcatttctgggtcttcaattctattccatt
ggtctacttgtctgtcgctatagcagtaccatgcagtttttatcacaatt
gctctgtagtacagctttaggtcaggcatggtgattcccccagagtttct
tttatccttgagaagagtttttgctatcctaggttttttgttatcccgga
tgaatttgcagattgccctttctaattcattaaagaattgagttggaatt
ttgatggggattgcattgaatctgtagattgctttttgcaagatagccat
ttttagtatatggatcctggccatccattgagcatgggaggtttttccat
cttctgagatcttctttaatttcttt
gaattctgtgttttaaaattcagcagtaaatttaactccacaggaaatgc
ttatgggaagacaattttgctcagttaatacaaaatcagaaatctgattt
atttcttttctccttctgctcttctgtttacaaataagtaattaccatgg
gcacagttcagacataactccttgccctttaagacataagtccagtgtgc
aactagtgctgttaggagccaggttctcactgggaaatggaattggtggc
agtctgtgaaagggtgcaggcagggatactgggtcctttaagactaactg
catgccatccccagcagtcaggcctaatgactaaactaaggtgaggtaca
ggaacctgaataggaagggagagtatggaagtcctgtgttctcctcctgc
attctgatacatgggtgtgtgcactcaacaatcatgcccccacacacctt
atttattatttaagatttatttatttattttacctataggaatacactgt
agctgtacaggtagttgtgagccttcatgtggttgttgggaattgaattt
aggacctctgctcactccggttaacctcgctccggtcggtgccccactca
ctccagccaaatgatttatttagtattataagtacactgtttgcttgtct
tcaaacacaccagaagagggcgtcagatcttcattatggggtagttgtga
gccaccatgtggttgctgggatttgaacttcaggaccttcggaagagcag
tcagtgctcttcttactctaatgtgccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41058867_41059395
seq2: B6Ng01-017P16.b_392_921 (reverse)

seq1  AAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTC-AT  49
      ||||||||||||||||||||||||||||||||| | ||||||||||| ||
seq2  AAAGAAATTAAAGAAGATCTCAGAAGATGGAAAAACCTCCCATGCTCAAT  50

seq1  GGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATC  99
      |||| | ||||||| | ||  |||||||||||||||||| ||||||||||
seq2  GGATGGCCAGGATCCATATACTAAAAATGGCTATCTTGCAAAAAGCAATC  100

seq1  TACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAACGA  149
      |||||||||||||||||||||||||||||||||||||||||||| || ||
seq2  TACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTTAATGA  150

seq1  ATTTGAAAGAGCAATCTGCAAATTCATCTGGAATAACAAAAAACCTAGGA  199
      ||| ||||| |||||||||||||||||| || ||||||||||||||||||
seq2  ATTAGAAAGGGCAATCTGCAAATTCATCCGGGATAACAAAAAACCTAGGA  200

seq1  TAGCAAAAACTCTTCTCAAGGATAACAGAACCTCTGGTGGAATCACCATG  249
      ||||||||||||||||||||||||| |||| |||||| ||||||||||||
seq2  TAGCAAAAACTCTTCTCAAGGATAAAAGAAACTCTGGGGGAATCACCATG  250

seq1  CCTGACCTAAAGCTTTACTACAGAGCAATTGTGATAAAAACTGCATGGTA  299
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CCTGACCTAAAGCTGTACTACAGAGCAATTGTGATAAAAACTGCATGGTA  300

seq1  CTGGTATAGTGACAGACAAGCAGACCAATGGAATAGAATTGAAGACTCAG  349
      ||| ||||| |||||||||| ||||||||||||||||||||||||| |||
seq2  CTGCTATAGCGACAGACAAGTAGACCAATGGAATAGAATTGAAGACCCAG  350

seq1  AAACGAATCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAA  399
      ||| ||| |||||| ||||||||||||||||||| ||||||||||| |||
seq2  AAATGAACCCACACTCCTATGGTCACTTGATCTTTGACAAGGGAGCAAAA  400

seq1  ACCATCCAGTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAA  449
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ACCATCCAGTGGAAAAAAGACGGCATTTTCAACAAATGGTGCTGGCACAA  450

seq1  CTGGTTGTTATCATGTAGAAGAATGCGAATTGATCCACTCCTATCTCCTT  499
      ||||| ||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTGGTGGTTATCATGTAGAAGAATGCGAATTGATCCATTCCTATCTCCTT  500

seq1  GTACTAAGGTCAAATCTAAGTGGATCAAGG  529
      ||||||||||||||||||||||||||||||
seq2  GTACTAAGGTCAAATCTAAGTGGATCAAGG  530

seq1: chr3_133210807_133211579
seq2: B6Ng01-017P16.g_68_846 (reverse)

seq1  ATGGCACA-TCGGGTAAGAAGAGCACTGACTGCTCTTCCGAAGGTCCTG-  48
      |||||||| | | |||||||||||||||||||||||||||||||||||| 
seq2  ATGGCACATTAGAGTAAGAAGAGCACTGACTGCTCTTCCGAAGGTCCTGA  50

seq1  AGTTCAAATCCCAGCAACCACATGGTGGCTCACAACTA-CCCATAATG-A  96
      |||||||||||||||||||||||||||||||||||||| ||||||||| |
seq2  AGTTCAAATCCCAGCAACCACATGGTGGCTCACAACTACCCCATAATGAA  100

seq1  GATCTGACGCCCTCTTCTGGTGTGTTTGAAGAC-AGC-AACAGTGTACTT  144
      ||||||||||||||||||||||||||||||||| ||| ||||||||||||
seq2  GATCTGACGCCCTCTTCTGGTGTGTTTGAAGACAAGCAAACAGTGTACTT  150

seq1  ATAATACTAAATAAATCATTTGGCTGGAGTGAGTGGGGCACCGACCGGAG  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATACTAAATAAATCATTTGGCTGGAGTGAGTGGGGCACCGACCGGAG  200

seq1  CGAGGTTAACCGGAGTGAGCAGAGGTCCTAAATTCAATTCCCAACAACCA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGTTAACCGGAGTGAGCAGAGGTCCTAAATTCAATTCCCAACAACCA  250

seq1  CATGAAGGCTCACAACTACCTGTACAGCTACAGTGTATTCCTATAGGTAA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGGCTCACAACTACCTGTACAGCTACAGTGTATTCCTATAGGTAA  300

seq1  AATAAATAAATAAATCTTAAATAATAAATAAGGTGTGTGGGGGCATGATT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAAATAAATCTTAAATAATAAATAAGGTGTGTGGGGGCATGATT  350

seq1  GTTGAGTGCACACACCCATGTATCAGAATGCAGGAGGAGAACACAGGACT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGTGCACACACCCATGTATCAGAATGCAGGAGGAGAACACAGGACT  400

seq1  TCCATACTCTCCCTTCCTATTCAGGTTCCTGTACCTCACCTTAGTTTAGT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATACTCTCCCTTCCTATTCAGGTTCCTGTACCTCACCTTAGTTTAGT  450

seq1  CATTAGGCCTGACTGCTGGGGATGGCATGCAGTTAGTCTTAAAGGACCCA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGGCCTGACTGCTGGGGATGGCATGCAGTTAGTCTTAAAGGACCCA  500

seq1  GTATCCCTGCCTGCACCCTTTCACAGACTGCCACCAATTCCATTTCCCAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCCTGCCTGCACCCTTTCACAGACTGCCACCAATTCCATTTCCCAG  550

seq1  TGAGAACCTGGCTCCTAACAGCACTAGTTGCACACTGGACTTATGTCTTA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACCTGGCTCCTAACAGCACTAGTTGCACACTGGACTTATGTCTTA  600

seq1  AAGGGCAAGGAGTTATGTCTGAACTGTGCCCATGGTAATTACTTATTTGT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCAAGGAGTTATGTCTGAACTGTGCCCATGGTAATTACTTATTTGT  650

seq1  AAACAGAAGAGCAGAAGGAGAAAAGAAATAAATCAGATTTCTGATTTTGT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAAGAGCAGAAGGAGAAAAGAAATAAATCAGATTTCTGATTTTGT  700

seq1  ATTAACTGAGCAAAATTGTCTTCCCATAAGCATTTCCTGTGGAGTTAAAT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACTGAGCAAAATTGTCTTCCCATAAGCATTTCCTGTGGAGTTAAAT  750

seq1  TTACTGCTGAATTTTAAAACACAGAATTC  773
      |||||||||||||||||||||||||||||
seq2  TTACTGCTGAATTTTAAAACACAGAATTC  779