BAC Information

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BAC

Clone NameB6Ng01-017P22
Chromosome3 (Build37)
Map Location 90,225,325 - 90,353,377
singlet/doubletdoublet
Overlap geneInts3, Npr1, LOC668141, Ilf2, Snapap, 2500003M10Rik, S100a1, S100a13, S100a14, S100a16
Upstream geneShc1, Pygo2, Pbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra, Atp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l, Rps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b, Gatad2b, Slc27a3
Downstream geneEG628324, S100a3, S100a4, S100a5, S100a6, S100a7a, S100a8, S100a9, LOC668165, LOC383949, Pglyrp4, LOC329706, EG545541, LOC635737, EG668174, LOC668179, LOC635756, 4930529C04Rik, 9130204L05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017P22.bB6Ng01-017P22.g
ACCDH851515DH851516
length236698
definitionDH851515|Mus musculus domesticus DNA, BAC clone: B6Ng01-017P22, 5' end.DH851516|Mus musculus domesticus DNA, BAC clone: B6Ng01-017P22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,225,325 - 90,225,560)(90,352,680 - 90,353,377)
sequence
actgagaataagggtcttaagaacacatttagagaacacagggattcagc
gcttatccagagtgtgactgctgggcacttgggaggtagaggcagaggga
tctcttgtcagttccaggctggcctggtctacagagagttctaggacagc
cagggatacagagaaaccctatcttgaaaaaccaaaaaagaagaaggaga
aggaggaagaggaagaagaggagaaggaggaggagg
gaattcctaaggcagaggcagaaagattggagactggattgagtccgaga
gatcagcagaactatgtaatagtgaattagctaaaccgctttggctcctg
gcaagtcgaatgcactgcacccatccaagagctctctggattcttgaatg
aaacacacacacaccagctagttttaatatgccttgactagctcaatggt
tgatcacttctaaacctcccagcagctagcacacactcccctcaggtatt
cctgagttaacatcttttaagatctgtacttcagctctgctaccccagac
ccaatagaggaagaggcccctagggccactttcccagattcttatatgtt
ggtgggccattatgtttcatctttctgctttcctgtatggcaattctccc
tcctcccccctccctccctctctctcagtctcttgcctgcacaaaagtcc
tgccccatcttcctgcccagccattggatgtacaacaattctttattatc
agtcgaagccagctggaggtagggaccctcaggtctggaagcaaggcttt
tgggaggtgaaataagacaaagaattagaaccaattcccaacagaactat
ataacaagagccaggttaggtaagattacacaagactgtttcaaagatcc
aaactaatagtaagacattaaatgtgtgtgtgtgtgcgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_90225325_90225560
seq2: B6Ng01-017P22.b_53_288

seq1  ACTGAGAATAAGGGTCTTAAGAACACATTTAGAGAACACAGGGATTCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGAATAAGGGTCTTAAGAACACATTTAGAGAACACAGGGATTCAGC  50

seq1  GCTTATCCAGAGTGTGACTGCTGGGCACTTGGGAGGTAGAGGCAGAGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATCCAGAGTGTGACTGCTGGGCACTTGGGAGGTAGAGGCAGAGGGA  100

seq1  TCTCTTGTCAGTTCCAGGCTGGCCTGGTCTACAGAGAGTTCTAGGACAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTGTCAGTTCCAGGCTGGCCTGGTCTACAGAGAGTTCTAGGACAGC  150

seq1  CAGGGATACAGAGAAACCCTATCTTGAAAAACCAAAAAAGAAGAAGGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGATACAGAGAAACCCTATCTTGAAAAACCAAAAAAGAAGAAGGAGA  200

seq1  AGGAGGAAGAGGAAGAAGAGGAGAAGGAGGAGGAGG  236
      ||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAAGAGGAAGAAGAGGAGAAGGAGGAGGAGG  236

seq1: chr3_90352680_90353377
seq2: B6Ng01-017P22.g_69_766 (reverse)

seq1  CACACACACACGCACACACACACACATTTAATGTCTTACTATTAGTTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACGCACACACACACACATTTAATGTCTTACTATTAGTTTGG  50

seq1  ATCTTTGAAACAGTCTTGTGTAATCTTACCTAACCTGGCTCTTGTTATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTGAAACAGTCTTGTGTAATCTTACCTAACCTGGCTCTTGTTATAT  100

seq1  AGTTCTGTTGGGAATTGGTTCTAATTCTTTGTCTTATTTCACCTCCCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGTTGGGAATTGGTTCTAATTCTTTGTCTTATTTCACCTCCCAAA  150

seq1  AGCCTTGCTTCCAGACCTGAGGGTCCCTACCTCCAGCTGGCTTCGACTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTGCTTCCAGACCTGAGGGTCCCTACCTCCAGCTGGCTTCGACTGA  200

seq1  TAATAAAGAATTGTTGTACATCCAATGGCTGGGCAGGAAGATGGGGCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAGAATTGTTGTACATCCAATGGCTGGGCAGGAAGATGGGGCAGG  250

seq1  ACTTTTGTGCAGGCAAGAGACTGAGAGAGAGGGAGGGAGGGGGGAGGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGTGCAGGCAAGAGACTGAGAGAGAGGGAGGGAGGGGGGAGGAGG  300

seq1  GAGAATTGCCATACAGGAAAGCAGAAAGATGAAACATAATGGCCCACCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTGCCATACAGGAAAGCAGAAAGATGAAACATAATGGCCCACCAA  350

seq1  CATATAAGAATCTGGGAAAGTGGCCCTAGGGGCCTCTTCCTCTATTGGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAAGAATCTGGGAAAGTGGCCCTAGGGGCCTCTTCCTCTATTGGGT  400

seq1  CTGGGGTAGCAGAGCTGAAGTACAGATCTTAAAAGATGTTAACTCAGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGTAGCAGAGCTGAAGTACAGATCTTAAAAGATGTTAACTCAGGAA  450

seq1  TACCTGAGGGGAGTGTGTGCTAGCTGCTGGGAGGTTTAGAAGTGATCAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGAGGGGAGTGTGTGCTAGCTGCTGGGAGGTTTAGAAGTGATCAAC  500

seq1  CATTGAGCTAGTCAAGGCATATTAAAACTAGCTGGTGTGTGTGTGTTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAGCTAGTCAAGGCATATTAAAACTAGCTGGTGTGTGTGTGTTTCA  550

seq1  TTCAAGAATCCAGAGAGCTCTTGGATGGGTGCAGTGCATTCGACTTGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGAATCCAGAGAGCTCTTGGATGGGTGCAGTGCATTCGACTTGCCA  600

seq1  GGAGCCAAAGCGGTTTAGCTAATTCACTATTACATAGTTCTGCTGATCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCAAAGCGGTTTAGCTAATTCACTATTACATAGTTCTGCTGATCTC  650

seq1  TCGGACTCAATCCAGTCTCCAATCTTTCTGCCTCTGCCTTAGGAATTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGACTCAATCCAGTCTCCAATCTTTCTGCCTCTGCCTTAGGAATTC  698