BAC Information

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BAC

Clone NameB6Ng01-018D20
Chromosome3 (Build37)
Map Location 116,442,367 - 116,610,142
singlet/doubletdoublet
Overlap geneAgl, LOC100043710, LOC100043250, Frrs1
Upstream geneDph5, LOC626061, Slc30a7, Extl2, Vcam1, Gpr88, Cdc14a, Rtcd1, Dbt, LOC100043702, LOC100043705, Lrrc39, A930028L21Rik, Sass6, Hiat1, Slc35a3
Downstream genePalmd, EG668749, 1700061I17Rik, LOC674908, D3Bwg0562e, 4833424O15Rik, EG668759, Snx7, LOC100043260
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018D20.bB6Ng01-018D20.g
ACCDH851699DH851700
length7821,032
definitionDH851699|Mus musculus domesticus DNA, BAC clone: B6Ng01-018D20, 5' end.DH851700|Mus musculus domesticus DNA, BAC clone: B6Ng01-018D20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,442,367 - 116,443,144)(116,609,111 - 116,610,142)
sequence
gaattcttccaggaaaaaaggaccatgcttatagttctctctctctctct
ctctctctctctctctgtctctctctctctctgttctctctctctctttt
agcattgctaaggattaaaaaagcagcaggcctttggtccttgggactgg
agagatgctcggcagttaagagcacttactgctgttacagaggaccaggg
ttcagttcccagcacccaagttggttgacttacaatttcctccaactcca
gctctagaagatgaagtgccttcttctatccttcacgaacacggccttta
tgtgctcaaactcatactctgacagacacaatttaaaaaaaaaaaggctg
gagagatggctcagcagttaaaagctgttcttccagaggacctgggcttg
atttccaggacccacatgccaggttccaacttcccgtaactccaggtcca
aaggatctgatgtcttggcctctgtgggcaccaggcatatatctggtaca
ctgattgatatacagtgaaggaaaacacatgtacaatataataatagttt
ttaaaaagttttattttaaagtacattttaaacacacacacaggacttct
tcacactttctagtgcaagtgctctaccaccaagctttgcgcaagtcaca
catttctaaaaaaattctgtagcacacgtgcccctgaagacctgagtgaa
acagggctctcttttaagattagctacaaacaagatgttagcaactgcat
ttcttttttaattgatgggaggaaatttagcc
gaattcagaagtaactgtggctactcgggcctcccagctcctgggccttt
ctaacttacagtagtatctgcctcccttcccatcacccacttacaaagat
ggatcagtgccgggaacaggacaaggaggaaccaggaagatgaaaggaaa
gaaagcatgaatctggttctggctaggatgagaatggaaaggttagcacc
cacaacgctgtgggcctaggaatgagtatggccggggttagacaaggaag
gaaggacatgggagctttgagaaggctgatccagttcataaagaacataa
aagaaccgtttctccagttgcattaataatggattatcttgaacaaggcc
ctttgttccccatttccccctgcttcagtagaatacatagataaacagag
ttagagccaagagccacacggcccccacggcttcccagttggcatctgct
gcgctgtccttcccacagcctcctgggctggtgccggatccgggaaggat
gagttatcatctaacctacagccccagatcctcacacaaattgagtagta
ctaacaagagtgtgattcacgtagtcaataaaggtataggccatctgtgc
cctggcttgacctccgcagaccagaagctaacaaaaccaaaacagactca
gtttctgcatgctaacttaaccatgattttccagactatttctttttatc
ctgtgaaaaatattttaatctctattctgcagagtatcccttctttaaga
gaacatgatttcactgttttttgacataatgccctagacacagaaaaaaa
atcatttagtttaacaattgcctgtttttaaaaatatatgaattactttt
tttcaaaaaaaaaaaaaaaacctaagttgtttattccaaatggataaaca
cacgtagtcagacaagcctggcgggttcgttcctaagggaaacgggcatg
ctagaataatgtggcacgggtttcttggcacctttgatgatgagtatacc
cagcaataccacctcgaaaaaagatgctgtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_116442367_116443144
seq2: B6Ng01-018D20.b_43_824

seq1  GAATTCTTCCAGGAAAAAAGGACCATGCTTATAGTTCTCTCTCTCTCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCAGGAAAAAAGGACCATGCTTATAGTTCTCTCTCTCTCTCT  50

seq1  CTCTCTCTCTCTCTCTGTCTCTCTCTCTCTCTGTTCTCTCTCTCTCTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTGTCTCTCTCTCTCTCTGTTCTCTCTCTCTCTTTT  100

seq1  AGCATTGCTAAGGATTAAAAAAGCAGCAGGCCTTTGGTCCTTGGGACTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTGCTAAGGATTAAAAAAGCAGCAGGCCTTTGGTCCTTGGGACTGG  150

seq1  AGAGATGCTCGGCAGTTAAGAGCACTTACTGCTGTTACAGAGGACCAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGCTCGGCAGTTAAGAGCACTTACTGCTGTTACAGAGGACCAGGG  200

seq1  TTCAGTTCCCAGCACCCAAGTTGGTTGACTTACAATTTCCTCCAACTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTCCCAGCACCCAAGTTGGTTGACTTACAATTTCCTCCAACTCCA  250

seq1  GCTCTAGAAGATGAAGTGCCTTCTTCTATCCTTCACGAACACGGCCTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAGAAGATGAAGTGCCTTCTTCTATCCTTCACGAACACGGCCTTTA  300

seq1  TGTGCTCAAACTCATACTCTGACAGACACAATTTAAAAAAAAAAAGGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTCAAACTCATACTCTGACAGACACAATTTAAAAAAAAAAAGGCTG  350

seq1  GAGAGATGGCTCAGCAGTTAAAAGCTGTTCTTCCAGAGGACCTGGGCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATGGCTCAGCAGTTAAAAGCTGTTCTTCCAGAGGACCTGGGCTTG  400

seq1  ATTTCCAGGACCCACATGCCAGGTTCCAACTTCCCGTAACTCCAGGTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAGGACCCACATGCCAGGTTCCAACTTCCCGTAACTCCAGGTCCA  450

seq1  AAGGATCTGATGTCTTGGCCTCTGTGGGCACCAGGCATATATCTGGTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATCTGATGTCTTGGCCTCTGTGGGCACCAGGCATATATCTGGTACA  500

seq1  CTGATTGATATACAGTGAAGGAAAACACATGTACAATAGAATAATAGTTT  550
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTGATTGATATACAGTGAAGGAAAACACATGTACAATATAATAATAGTTT  550

seq1  TTAAAAAGTTTTATTAAAAAGTACATTTTAAACACACACACAGGACTTCT  600
      |||||||||||||||  |||||||||||||||||||||||||||||||||
seq2  TTAAAAAGTTTTATTTTAAAGTACATTTTAAACACACACACAGGACTTCT  600

seq1  TCACACATTCTAG-GCAAGTGCTCTACCACCAAGCTTTGCGCAAGTCACA  649
      |||||| |||||| ||||||||||||||||||||||||||||||||||||
seq2  TCACACTTTCTAGTGCAAGTGCTCTACCACCAAGCTTTGCGCAAGTCACA  650

seq1  CATTTC-CAAAAAATTCTGTAGCACACGTG-CCCTGAAGACCTGAGTGAA  697
      ||||||  |||||||||||||||||||||| |||||||||||||||||||
seq2  CATTTCTAAAAAAATTCTGTAGCACACGTGCCCCTGAAGACCTGAGTGAA  700

seq1  ACAGGGCTCTCTTTTAAGATTAGCTACAAGCAAGATGTAAACAACTGCAT  747
      ||||||||||||||||||||||||||||| |||||||| | |||||||||
seq2  ACAGGGCTCTCTTTTAAGATTAGCTACAAACAAGATGTTAGCAACTGCAT  750

seq1  TTCTTTTTAACTAGA-GGGAGGAAATTAAGCC  778
      |||||||| | | || ||||||||||| ||||
seq2  TTCTTTTTTAATTGATGGGAGGAAATTTAGCC  782

seq1: chr3_116609111_116610142
seq2: B6Ng01-018D20.g_67_1098 (reverse)

seq1  GCACAGCATCTTTTTTACGGAGTGGTATTTGCTCGGGTTTACTCCTCCAT  50
      |||||||||||||||| ||  |||||| ||||| |||| ||||| | |||
seq2  GCACAGCATCTTTTTT-CGAGGTGGTA-TTGCT-GGGTATACTCAT-CAT  46

seq1  CAAAGTGTGCAAGGAAACCCGTGCCACTTAATCTTAGCATGCCCGTTTCC  100
      ||||| |||| | |||||||||||||| | ||  ||||||||||||||||
seq2  CAAAG-GTGCCAAGAAACCCGTGCCACATTATTCTAGCATGCCCGTTTCC  95

seq1  CTTAGGAACGAACACGTCACGGCTCGTCTG-CTCCGTGTGTTTCTCATTT  149
      ||||||||||||| || || |||| ||||| || ||||||||| ||   |
seq2  CTTAGGAACGAACCCGCCA-GGCTTGTCTGACTACGTGTGTTTATC-CAT  143

seq1  TTGTAATAAACAACCTAGGTTTTTTTTTTTTTTT--GAAAAAAGT-ATTC  196
      ||| |||||||||| |||||||||||||||||||   |||||||| ||||
seq2  TTGGAATAAACAACTTAGGTTTTTTTTTTTTTTTTGAAAAAAAGTAATTC  193

seq1  ATATACTTTTTTAAAAACA-GCAATTGTTAAACTAAATGA-TTTTTTTCT  244
      |||||  |||||||||||| |||||||||||||||||||| |||||||||
seq2  ATATA--TTTTTAAAAACAGGCAATTGTTAAACTAAATGATTTTTTTTCT  241

seq1  GTGTCTA-GGCATATTGTC-AAAAACAGTGAAATCATGTTCTCTTAAAGA  292
      ||||||| |||||  |||| ||||||||||||||||||||||||||||||
seq2  GTGTCTAGGGCATTATGTCAAAAAACAGTGAAATCATGTTCTCTTAAAGA  291

seq1  AGGGATACTCTGCAGAATAGAGATTAATATATTTTTCACAGGAT-AAAAG  341
      ||||||||||||||||||||||||||| |||||||||||||||| |||||
seq2  AGGGATACTCTGCAGAATAGAGATTAAAATATTTTTCACAGGATAAAAAG  341

seq1  AAATAGTCTGGAAAATCATGGTTAAGTTAGCATGCAGAAACTGAGTCTGT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTCTGGAAAATCATGGTTAAGTTAGCATGCAGAAACTGAGTCTGT  391

seq1  TTTGGTTTTGTTAGCTTCTGGTCTGCGGAGGTCAAGCCAGGGCACAGATG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTTTGTTAGCTTCTGGTCTGCGGAGGTCAAGCCAGGGCACAGATG  441

seq1  GCCTATACCTTTATTGACTACGTGAATCACACTCTTGTTAGTACTACTCA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATACCTTTATTGACTACGTGAATCACACTCTTGTTAGTACTACTCA  491

seq1  ATTTGTGTGAGGATCTGGGGCTGTAGGTTAGATGATAACTCATCCTTCCC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGTGAGGATCTGGGGCTGTAGGTTAGATGATAACTCATCCTTCCC  541

seq1  GGATCCGGCACCAGCCCAGGAGGCTGTGGGAAGGACAGCGCAGCAGATGC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCGGCACCAGCCCAGGAGGCTGTGGGAAGGACAGCGCAGCAGATGC  591

seq1  CAACTGGGAAGCCGTGGGGGCCGTGTGGCTCTTGGCTCTAACTCTGTTTA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGGGAAGCCGTGGGGGCCGTGTGGCTCTTGGCTCTAACTCTGTTTA  641

seq1  TCTATGTATTCTACTGAAGCAGGGGGAAATGGGGAACAAAGGGCCTTGTT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTATTCTACTGAAGCAGGGGGAAATGGGGAACAAAGGGCCTTGTT  691

seq1  CAAGATAATCCATTATTAATGCAACTGGAGAAACGGTTCTTTTATGTTCT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATAATCCATTATTAATGCAACTGGAGAAACGGTTCTTTTATGTTCT  741

seq1  TTATGAACTGGATCAGCCTTCTCAAAGCTCCCATGTCCTTCCTTCCTTGT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAACTGGATCAGCCTTCTCAAAGCTCCCATGTCCTTCCTTCCTTGT  791

seq1  CTAACCCCGGCCATACTCATTCCTAGGCCCACAGCGTTGTGGGTGCTAAC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCCCGGCCATACTCATTCCTAGGCCCACAGCGTTGTGGGTGCTAAC  841

seq1  CTTTCCATTCTCATCCTAGCCAGAACCAGATTCATGCTTTCTTTCCTTTC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCATTCTCATCCTAGCCAGAACCAGATTCATGCTTTCTTTCCTTTC  891

seq1  ATCTTCCTGGTTCCTCCTTGTCCTGTTCCCGGCACTGATCCATCTTTGTA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCCTGGTTCCTCCTTGTCCTGTTCCCGGCACTGATCCATCTTTGTA  941

seq1  AGTGGGTGATGGGAAGGGAGGCAGATACTACTGTAAGTTAGAAAGGCCCA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGTGATGGGAAGGGAGGCAGATACTACTGTAAGTTAGAAAGGCCCA  991

seq1  GGAGCTGGGAGGCCCGAGTAGCCACAGTTACTTCTGAATTC  1032
      |||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTGGGAGGCCCGAGTAGCCACAGTTACTTCTGAATTC  1032