BAC Information

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BAC

Clone NameB6Ng01-018F12
Chromosome3 (Build37)
Map Location 61,677,318 - 61,833,746
singlet/doubletdoublet
Overlap geneLOC669910
Upstream geneEG666853, P2ry1, Rap2b, LOC666891
Downstream geneLOC676965, 4631416L12Rik, Dhx36, Gpr149, LOC676984
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018F12.bB6Ng01-018F12.g
ACCDH851772DH851773
length1,077975
definitionDH851772|Mus musculus domesticus DNA, BAC clone: B6Ng01-018F12, 5' end.DH851773|Mus musculus domesticus DNA, BAC clone: B6Ng01-018F12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,832,656 - 61,833,746)(61,677,318 - 61,678,299)
sequence
gaattccatgaactgactgaagagagctgacttgaactcagagatatgca
tgcctctctttcatgagtactgagattaaagatgtatatcaacacctaga
cctaaggttttctttatgtgaaacttgctctatactagactggccttgaa
ctcagagatatgaatgcctctgtttcctgagtattgagattaaagatgta
taccaacacctagacctaagtttttctttatttgaaacttgctctatact
agactggccttgaactcagagatctgaactctttctcctgggattgaagg
tgtgtctgtattctagctgggtcacacggacctagaagttctttgaatgt
gaagttcttacagagcaaccatgttctgaattacaattcttctacagtca
gaaggcttaggcataattttaataagcaactaggtttatagacccaacaa
taaaagccataggctgcatatgaggtaaagcactaaccagtcttgatgag
ttagtgtgtgtgtatgtgtgtgtctatatcagacaaccatttagtaaata
ttacattgaagcttaagttcataaaatccatgtttgtgtattaccatata
aaatatttttacaagataataaaaggaagaatggaaagtaactaaggcta
cacattggattagcgttataaaaatattcatgagtaagtacaggtaataa
gtagcaccctagaacatacacaggggcacaatttctagtttctgatctat
ttcttttagaggtgggctagaaagaaaaacaaattcaagagttcacgtcc
ttacttccatgccaatccttttactttgtttccaggaggaccccacacta
tatcttcttgattagaataatgtcttgcatgccctttgagttcacaacca
attgagacaattttacagatcctcaatctttctgtatgcatttgctctaa
gatcaacatgtgaatctgtacaatgtaccatagtgtagctgtcttgtctt
ttcggtcagaacttaaagatcagttccttttcaatttattatattgacta
tatctgcagcaggaattgtttatttct
gaattccactccttctattttctgggttaatctacaatctggaacacctc
cagcaccaacacattgaagagaattctagctgttatagataattaaaaag
gctgtggggaaagttacctattctatacataggcaaagaaaatctgttta
ggtttgaccttgttaaatttgctaagtgaaaagaaatcatatactttgca
ataattcatttcaaaatgaagggaagaaatttaattattcagcacaatag
gaaaccccatatggaaaaggaggaaaatattccataacaagctttatttc
cctcccaaattaaagaacatagtcaatgaaaaaaatagaaattatttcaa
gataatatgaagaataatgaagttttatttaagtcgattgaagataaaca
gtgctctacaacattaatatacaaattaaaggaaataaagtattacagtc
atggctgaaacctaattgcagtcacaaactatacaagtcagtcataatta
tgacagaagacaagaagacagcactgtacatttgagaaagagagagcttg
aggatactgaatgggatactgagaagtgttgggcagtgagcgccagagaa
ataaagggagtgggagaaaacccgcatcccaccagagttccagtgctctg
ggcaggcagacacagaaggactgccacatgctttcctcatggccctgggt
gggtgtctggctgtgtgaagccacagacaccagctcggtgggtggtggac
aaggggcagtcctaggtaacaggttctctctcagtctcgtgcatctcaca
ctggataccactcaagagctgagaacagaatgggggcccctggaggtgac
acaggctaccccagggccgaagggatgagaggcagggcgaagggggccct
aatggtttccacgtgggtaagagttcttggtcctgtcttggctggagcat
aggaagttctcagcgggagttagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_61832656_61833746
seq2: B6Ng01-018F12.b_47_1123 (reverse)

seq1  AGAAATAAACAATTCCTGGCTGCAGATATACGTCAATATATATAAAATTG  50
      ||||||||||||||||| |||||||||||| ||||||||| || ||||||
seq2  AGAAATAAACAATTCCT-GCTGCAGATATA-GTCAATATA-AT-AAATTG  46

seq1  AAAGAGAAACTGATTCTTTTAAGTTCTGAACCGAAAAGAACAAAGACAGC  100
      ||| || |||||||   ||||||||||| ||||||||||   ||||||||
seq2  AAA-AGGAACTGAT--CTTTAAGTTCTG-ACCGAAAAGA--CAAGACAGC  90

seq1  TGACACTATGGTACATTTTGTACAGATTCTACATTGTTTGATCTTAGAGC  150
      | |||||||||||||  |||||||||||| ||||   |||||||||||||
seq2  T-ACACTATGGTACA--TTGTACAGATTC-ACAT--GTTGATCTTAGAGC  134

seq1  AATTGCATACAGAAAGATTGAGAATCTGTAAAATTGTCTCAATTGG-TGT  199
      || ||||||||||||||||||| ||||||||||||||||||||||| |||
seq2  AAATGCATACAGAAAGATTGAGGATCTGTAAAATTGTCTCAATTGGTTGT  184

seq1  GAACTC-AAGGGCATGCAAGACATTATTCTAATCAAGAAGATATAGTGTG  248
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCAAAGGGCATGCAAGACATTATTCTAATCAAGAAGATATAGTGTG  234

seq1  GGGTCCTCCTGGAAACAAAGTAAAAGGATTGGCATGGAAGTAAGGACGTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCTCCTGGAAACAAAGTAAAAGGATTGGCATGGAAGTAAGGACGTG  284

seq1  AACTCTTGAATTTTGTTTTTCTTTCTAGCCCACCTCT-AAAGAAATAGAT  347
      |||||||||| |||||||||||||||||||||||||| ||||||||||||
seq2  AACTCTTGAA-TTTGTTTTTCTTTCTAGCCCACCTCTAAAAGAAATAGAT  333

seq1  CAGAAACTAGAAATTGTGCCCCTGTGTATGTTCTAGGGTGCTACTTATTA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACTAGAAATTGTGCCCCTGTGTATGTTCTAGGGTGCTACTTATTA  383

seq1  CCTGTACTTACTCATGAATATTTTTATAACGCTAATCCAATGTGTAGCCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTACTTACTCATGAATATTTTTATAACGCTAATCCAATGTGTAGCCT  433

seq1  TAGTTACTTTCCATTCTTCCTTTTATTATCTTGTAAAAATATTTTATATG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTACTTTCCATTCTTCCTTTTATTATCTTGTAAAAATATTTTATATG  483

seq1  GTAATACACAAACATGGATTTTATGAACTTAAGCTTCAATGTAATATTTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATACACAAACATGGATTTTATGAACTTAAGCTTCAATGTAATATTTA  533

seq1  CTAAATGGTTGTCTGATATAGACACACACATACACACACACTAACTCATC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATGGTTGTCTGATATAGACACACACATACACACACACTAACTCATC  583

seq1  AAGACTGGTTAGTGCTTTACCTCATATGCAGCCTATGGCTTTTATTGTTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTGGTTAGTGCTTTACCTCATATGCAGCCTATGGCTTTTATTGTTG  633

seq1  GGTCTATAAACCTAGTTGCTTATTAAAATTATGCCTAAGCCTTCTGACTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTATAAACCTAGTTGCTTATTAAAATTATGCCTAAGCCTTCTGACTG  683

seq1  TAGAAGAATTGTAATTCAGAACATGGTTGCTCTGTAAGAACTTCACATTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGAATTGTAATTCAGAACATGGTTGCTCTGTAAGAACTTCACATTC  733

seq1  AAAGAACTTCTAGGTCCGTGTGACCCAGCTAGAATACAGACACACCTTCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACTTCTAGGTCCGTGTGACCCAGCTAGAATACAGACACACCTTCA  783

seq1  ATCCCAGGAGAAAGAGTTCAGATCTCTGAGTTCAAGGCCAGTCTAGTATA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGGAGAAAGAGTTCAGATCTCTGAGTTCAAGGCCAGTCTAGTATA  833

seq1  GAGCAAGTTTCAAATAAAGAAAAACTTAGGTCTAGGTGTTGGTATACATC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAGTTTCAAATAAAGAAAAACTTAGGTCTAGGTGTTGGTATACATC  883

seq1  TTTAATCTCAATACTCAGGAAACAGAGGCATTCATATCTCTGAGTTCAAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCTCAATACTCAGGAAACAGAGGCATTCATATCTCTGAGTTCAAG  933

seq1  GCCAGTCTAGTATAGAGCAAGTTTCACATAAAGAAAACCTTAGGTCTAGG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTCTAGTATAGAGCAAGTTTCACATAAAGAAAACCTTAGGTCTAGG  983

seq1  TGTTGATATACATCTTTAATCTCAGTACTCATGAAAGAGAGGCATGCATA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGATATACATCTTTAATCTCAGTACTCATGAAAGAGAGGCATGCATA  1033

seq1  TCTCTGAGTTCAAGTCAGCTCTCTTCAGTCAGTTCATGGAATTC  1091
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAGTTCAAGTCAGCTCTCTTCAGTCAGTTCATGGAATTC  1077

seq1: chr3_61677318_61678299
seq2: B6Ng01-018F12.g_69_1043

seq1  GAATTCCACTCCTTCTATTTTCTGGGTTAATCTACAATCTGGAACACCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTCCTTCTATTTTCTGGGTTAATCTACAATCTGGAACACCTC  50

seq1  CAGCACCAACACATTGAAGAGAATTCTAGCTGTTATAGATAATTAAAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACCAACACATTGAAGAGAATTCTAGCTGTTATAGATAATTAAAAAG  100

seq1  GCTGTGGGGAAAGTTACCTATTCTATACATAGGCAAAGAAAATCTGTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGGGGAAAGTTACCTATTCTATACATAGGCAAAGAAAATCTGTTTA  150

seq1  GGTTTGACCTTGTTAAATTTGCTAAGTGAAAAGAAATCATATACTTTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGACCTTGTTAAATTTGCTAAGTGAAAAGAAATCATATACTTTGCA  200

seq1  ATAATTCATTTCAAAATGAAGGGAAGAAATTTAATTATTCAGCACAATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTCATTTCAAAATGAAGGGAAGAAATTTAATTATTCAGCACAATAG  250

seq1  GAAACCCCATATGGAAAAGGAGGAAAATATTCCATAACAAGCTTTATTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCCCATATGGAAAAGGAGGAAAATATTCCATAACAAGCTTTATTTC  300

seq1  CCTCCCAAATTAAAGAACATAGTCAATGAAAAAAATAGAAATTATTTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCAAATTAAAGAACATAGTCAATGAAAAAAATAGAAATTATTTCAA  350

seq1  GATAATATGAAGAATAATGAAGTTTTATTTAAGTCGATTGAAGATAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATATGAAGAATAATGAAGTTTTATTTAAGTCGATTGAAGATAAACA  400

seq1  GTGCTCTACAACATTAATATACAAATTAAAGGAAATAAAGTATTACAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCTACAACATTAATATACAAATTAAAGGAAATAAAGTATTACAGTC  450

seq1  ATGGCTGAAACCTAATTGCAGTCACAAACTATACAAGTCAGTCATAATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTGAAACCTAATTGCAGTCACAAACTATACAAGTCAGTCATAATTA  500

seq1  TGACAGAAGACAAGAAGACAGCACTGTACATTTGAGAAAGAGAGAGCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGAAGACAAGAAGACAGCACTGTACATTTGAGAAAGAGAGAGCTTG  550

seq1  AGGATACTGAATGGGATACTGAGAAGTGTTGGGCAGTGAGCGCCAGAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATACTGAATGGGATACTGAGAAGTGTTGGGCAGTGAGCGCCAGAGAA  600

seq1  ATAAAGGGAGTGGGAGAAAACCCGCATCCCACCAGAGTTCCAGTGCTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGGGAGTGGGAGAAAACCCGCATCCCACCAGAGTTCCAGTGCTCTG  650

seq1  GGCAGGCAGACACAGAAGGACTGCCACATGCTTTCCTCATGGCCCTGGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGCAGACACAGAAGGACTGCCACATGCTTTCCTCATGGCCCTGGGT  700

seq1  GGGTGTCTGGCTGTGTGAAGCCACAGACACCAGCTCGGTGGGTGGTGGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTCTGGCTGTGTGAAGCCACAGACACCAGCTCGGTGGGTGGTGGAC  750

seq1  AAGGGGCAGTCCTAGGTAACAGGTTCTCTCTCAGTCTCGTGCATCTCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGCAGTCCTAGGTAACAGGTTCTCTCTCAGTCTCGTGCATCTCACA  800

seq1  CTGGATACCACTCAAGAGCTGAGAACAGAATGGGGGCCCCTGGAGGTGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATACCACTCAAGAGCTGAGAACAGAATGGGGGCCCCTGGAGGTGAC  850

seq1  ACAGGCTACCCCAGGGCCGAAGGGATGAGAAGGCAGGGGCGAAGGGGGCC  900
      ||||||||||||||||||||||||||||| ||||| ||||||||||||||
seq2  ACAGGCTACCCCAGGGCCGAAGGGATGAG-AGGCA-GGGCGAAGGGGGCC  898

seq1  CTAAGTGGTTTCCACGTGGGTAAGAGTCCTTGGTCCTGTCCATGGCTGGA  950
      |||| |||||||||||||||||||||| ||||||||||| | ||||||||
seq2  CTAA-TGGTTTCCACGTGGGTAAGAGTTCTTGGTCCTGT-CTTGGCTGGA  946

seq1  GCATAGGAAGGTCCTCAAGCGGGAGGTTAGAC  982
      ||||||||| || ||| ||||||| |||||||
seq2  GCATAGGAA-GTTCTC-AGCGGGA-GTTAGAC  975