BAC Information

Click to search

BAC

Clone NameB6Ng01-018K04
Chromosome3 (Build37)
Map Location 88,894,168 - 89,029,069
singlet/doubletdoublet
Overlap geneRusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3
Upstream geneIqgap3, Mef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4, 2810403A07Rik, Rit1, Syt11, 5830417I10Rik, Msto1, Dap3, Ash1l
Downstream geneMuc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra, Atp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l, Rps27, Rab13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018K04.bB6Ng01-018K04.g
ACCDH851979DH851980
length704779
definitionDH851979|Mus musculus domesticus DNA, BAC clone: B6Ng01-018K04, 5' end.DH851980|Mus musculus domesticus DNA, BAC clone: B6Ng01-018K04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,894,168 - 88,894,870)(89,028,291 - 89,029,069)
sequence
gaattccacagagggtgtgactccaggtccctaacaatggacctcttaag
ctgggcagaccaggtggagcccgctgtgcagcgaggggagcagtcacgct
cctcacccccagcaaggccaggctccccgggactaatgagcccgctagga
gcctgcacctagccaggcacccccagataaaggttggcccagtactggaa
ggacagcgagccgaggcgcggcccgcggggctggcccgggtccgtcttac
gttgcctgggcggaggtggtggccttctggtccagcgaggggcggtcggc
ggacacggtggtgttggcagcgggggggcgggaacctggcggggtagggg
cgccgcggcggggaaggtgctacttctgggaaagagcggggatagcagca
gtgccagttcggggctggccaggcaaggcaaggccccccgagtgggagga
gaataagctcccactggggataggcgcacaggcaggagctgctcctccgg
gggactcgctgcccccagcagccggagccgggaattggaccacccggtca
gaggcgtaaagagcagggacccgggtgcgcccgcgcccccaccctccaac
agggggcgcccgtcggccgagaaccggaaaaccgggggccgagggaatag
cgagggaccggctgcaggcgggattggcggggccaggtgcagaggtggga
gggc
gaattctctggaattccacacagttgaactccagagcacatgtctgggta
gggaagctcagagacagtgggggccctgaggtcgggcaagaacagcttta
ggaaagtcactggggtggggaaagtgggcagctggggataccttgagctg
aagccctggttgggccactgctcggaaaggcgtggcctgccagtaggtct
gctccgtctgtttccacatgaccacatagaagcggccactgtcctggtaa
ctgaagaggaagcccgcatagtcatcatcagtgactgtgttcacgtggaa
ggtgccttcaaagtccacgccattaaaggccgtgtaccctggagtgggaa
caggaggagtgttaggggcagtacagctgccaggcggcctactgtgggtg
ggtgtgggcgggcgcagagatgcctgctgcatacaggactaggaaggccc
tgcaaatgctccatctaccctccacaggagccttccctttggaaacgact
gagccgggtgtcctttacataccaactgcaagacccgggtcactgttcat
agtctgaacaatttccatgccctggggttgataaaggaagagaaaaagcc
ctgatccaggtgcacagtgacaccccaggtcccaacaggcagccaggtct
gacagcgcctgcccagcctactgccccgcatacctggttgagcactaccc
agtttggatcgatctgggcgtcaccctcgggatccaggatcacagtctga
taggccccggaagtctgtgagggtacttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_88894168_88894870
seq2: B6Ng01-018K04.b_46_749

seq1  GAATTCCACAGAGGGTGTGACTCCAGGTCCCTAACAATGGACCTCTTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGAGGGTGTGACTCCAGGTCCCTAACAATGGACCTCTTAAG  50

seq1  CTGGGCAGACCAGGTGGAGCCCGCTGTGCAGCGAGGGGAGCAGTCACGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCAGACCAGGTGGAGCCCGCTGTGCAGCGAGGGGAGCAGTCACGCT  100

seq1  CCTCACCCCCAGCAAGGCCAGGCTCCCCGGGACTAATGAGCCCGCTAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACCCCCAGCAAGGCCAGGCTCCCCGGGACTAATGAGCCCGCTAGGA  150

seq1  GCCTGCACCTAGCCAGGCACCCCCAGATAAAGGTTGGCCCAGTACTGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCACCTAGCCAGGCACCCCCAGATAAAGGTTGGCCCAGTACTGGAA  200

seq1  GGACAGCGAGCCGAGGCGCGGCCCGCGGGGCTGGCCCGGGTCCGTCTTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGCGAGCCGAGGCGCGGCCCGCGGGGCTGGCCCGGGTCCGTCTTAC  250

seq1  GTTGCCTGGGCGGAGGTGGTGGCCTTCTGGTCCAGCGAGGGGCGGTCGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCTGGGCGGAGGTGGTGGCCTTCTGGTCCAGCGAGGGGCGGTCGGC  300

seq1  GGACACGGTGGTGTTGGCAGCGGGGGGGCGGGAACCTGGCGGGGTAGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACGGTGGTGTTGGCAGCGGGGGGGCGGGAACCTGGCGGGGTAGGGG  350

seq1  CGCCGCGGCGGGGAAGGTGCTACTTCTGGGAAAGAGCGGGGATAGCAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCGCGGCGGGGAAGGTGCTACTTCTGGGAAAGAGCGGGGATAGCAGCA  400

seq1  GTGCCAGTTCGGGGCTGGCCAGGCAAGGCAAGGCCCCCCGAGTGGGAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCAGTTCGGGGCTGGCCAGGCAAGGCAAGGCCCCCCGAGTGGGAGGA  450

seq1  GAATAAGCTCCCACTGGGGATAGGCGCACAGGCAGGAGCTGCTCCTCCGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAGCTCCCACTGGGGATAGGCGCACAGGCAGGAGCTGCTCCTCCGG  500

seq1  GGGACTCGCTGCCCCCAGCAGCCGGAGCCGGGAATTGGACCACCCGGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTCGCTGCCCCCAGCAGCCGGAGCCGGGAATTGGACCACCCGGTCA  550

seq1  GAGGCGTAAAGAGCAGGGACCCGGGTGCGCCCGCGCCCCCACCCTCCAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCGTAAAGAGCAGGGACCCGGGTGCGCCCGCGCCCCCACCCTCCAAC  600

seq1  AGGGGGCGCCCGTCGGCCGAGAACCGGAAAACCGGGGGCCGAGGGAATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGCGCCCGTCGGCCGAGAACCGGAAAACCGGGGGCCGAGGGAATAG  650

seq1  CGAGGGACCGGCTGCAGGCGGGATTGGCGGGGCCAGGTGCAGAGG-GGGA  699
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CGAGGGACCGGCTGCAGGCGGGATTGGCGGGGCCAGGTGCAGAGGTGGGA  700

seq1  GGGC  703
      ||||
seq2  GGGC  704

seq1: chr3_89028291_89029069
seq2: B6Ng01-018K04.g_66_844 (reverse)

seq1  GAAGTTACCCTCACAGACTTCC-GGGCCTATCAGACTGTGATCCTGGATC  49
      |||| ||||||||||||||||| |||||||||||||||||||||||||||
seq2  GAAG-TACCCTCACAGACTTCCGGGGCCTATCAGACTGTGATCCTGGATC  49

seq1  CCGAGGGTGACGCCCAGATCGATCCAAACTGGGTAGTGCTCAACCAGGTA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGGGTGACGCCCAGATCGATCCAAACTGGGTAGTGCTCAACCAGGTA  99

seq1  TGCGGGGCAGTAGGCTGGGCAGGCGCTGTCAGACCTGGCTGCCTGTTGGG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGGGGCAGTAGGCTGGGCAGGCGCTGTCAGACCTGGCTGCCTGTTGGG  149

seq1  ACCTGGGGTGTCACTGTGCACCTGGATCAGGGCTTTTTCTCTTCCTTTAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGGTGTCACTGTGCACCTGGATCAGGGCTTTTTCTCTTCCTTTAT  199

seq1  CAACCCCAGGGCATGGAAATTGTTCAGACTATGAACAGTGACCCGGGTCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCCAGGGCATGGAAATTGTTCAGACTATGAACAGTGACCCGGGTCT  249

seq1  TGCAGTTGGTATGTAAAGGACACCCGGCTCAGTCGTTTCCAAAGGGAAGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTTGGTATGTAAAGGACACCCGGCTCAGTCGTTTCCAAAGGGAAGG  299

seq1  CTCCTGTGGAGGGTAGATGGAGCATTTGCAGGGCCTTCCTAGTCCTGTAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTGGAGGGTAGATGGAGCATTTGCAGGGCCTTCCTAGTCCTGTAT  349

seq1  GCAGCAGGCATCTCTGCGCCCGCCCACACCCACCCACAGTAGGCCGCCTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGGCATCTCTGCGCCCGCCCACACCCACCCACAGTAGGCCGCCTG  399

seq1  GCAGCTGTACTGCCCCTAACACTCCTCCTGTTCCCACTCCAGGGTACACG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTGTACTGCCCCTAACACTCCTCCTGTTCCCACTCCAGGGTACACG  449

seq1  GCCTTTAATGGCGTGGACTTTGAAGGCACCTTCCACGTGAACACAGTCAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTAATGGCGTGGACTTTGAAGGCACCTTCCACGTGAACACAGTCAC  499

seq1  TGATGATGACTATGCGGGCTTCCTCTTCAGTTACCAGGACAGTGGCCGCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGATGACTATGCGGGCTTCCTCTTCAGTTACCAGGACAGTGGCCGCT  549

seq1  TCTATGTGGTCATGTGGAAACAGACGGAGCAGACCTACTGGCAGGCCACG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTGGTCATGTGGAAACAGACGGAGCAGACCTACTGGCAGGCCACG  599

seq1  CCTTTCCGAGCAGTGGCCCAACCAGGGCTTCAGCTCAAGGTATCCCCAGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCGAGCAGTGGCCCAACCAGGGCTTCAGCTCAAGGTATCCCCAGC  649

seq1  TGCCCACTTTCCCCACCCCAGTGACTTTCCTAAAGCTGTTCTTGCCCGAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCACTTTCCCCACCCCAGTGACTTTCCTAAAGCTGTTCTTGCCCGAC  699

seq1  CTCAGGGCCCCCACTGTCTCTGAGCTTCCCTACCCAGACATGTGCTCTGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGCCCCCACTGTCTCTGAGCTTCCCTACCCAGACATGTGCTCTGG  749

seq1  AGTTCAACTGTGTGGAATTCCAGAGAATTC  779
      ||||||||||||||||||||||||||||||
seq2  AGTTCAACTGTGTGGAATTCCAGAGAATTC  779