BAC Information

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BAC

Clone NameB6Ng01-019G20
Chromosome3 (Build37)
Map Location 49,812,259 - 49,898,070
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666230, 4932443G14, LOC545519, LOC676568, LOC666247, LOC100039579, LOC100039587, LOC638779, Pcdh18
Downstream geneLOC100039628, LOC639469, Slc7a11, EG621304, LOC100039667
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019G20.bB6Ng01-019G20.g
ACCDH852514DH852515
length6181,169
definitionDH852514|Mus musculus domesticus DNA, BAC clone: B6Ng01-019G20, 5' end.DH852515|Mus musculus domesticus DNA, BAC clone: B6Ng01-019G20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,812,259 - 49,812,876)(49,896,883 - 49,898,070)
sequence
gaattccatgttctatctctgtgactcaactttggtggatcttcctctca
ctttcaggctatcattgcttaaaataaaaaagatggtattttttttttaa
tcagagaatatataaattcttgttatttatttatttattcatttagtttt
aattagatattttctttatttacatttcaaaagttatcccctttcctagt
ttcctctctgaaaatcccctatcctcttccccctccccctgctccccaac
ccacccactccctcttcttagcccaggcattcccctatactagggcatag
taccttcacaggaccaagggcatctcctcccattgatgaccaactaggcc
atcctcagctacatatgcagctaaagctatgagtctttccatatgtcttc
tttgattggtggtttagtcccagggacctctggggttactggttagttta
tattgttgttcctcctaggggcctgcaaatgccttcagctccttgggtac
tttctctaactcctccattgtggaccctgtgctctgtctaatggatgact
gtcagcatccacttctgtattagtcaggcactggcatagcctctcaggag
acagctatatcagtctcc
gaattcagtaaagtgccagaggaagcaaaaatatagattgtgtattcagt
gtcagtggcaatgtgtggcagacaattgtaaaaatacaatttaaaaaggg
caattttatctgttatacagtggcaacaataaaagcttttatagatgaga
ggaaaatagtttttataaatatccctctcttcttttcttcctttcctccc
tttctcttttctttcttccttccttgattcctttctctccccctcccttc
tccctccttatttccatactagcagccttatacataatagctgagagttc
agaacatccctcaggtgaacctgatgtacaaacttaattatattgctttc
attaaaccatgtggtccttatgtgacaattaaaattttatgcctatcttg
ttattggataaagtgttgggaaggtgcatatattcactcccttctagttt
ttgattctttgaggtctcaacacaattgaggaaacactatggaccaatgg
tttgaacatagtattagtaaagttactgatcgaaaaatgatttgaaatgg
cttccactagtttatggaagagaaaattagttgctaccaaatagctttct
gtaagacatattctaaaatgtgctgtagccaattcatttttctgtatgtt
cagttcctactttataaaaagagctacataaaatgattcctaacagaagc
aaaaccttcaccaacaaaagcatacacagtattttacccttagacttact
ttaataaaaatttagatacatcaactatacagaggctaaagcaatgacta
aaagaaaccaaaggaactagataacatatccaagaaacttgtccaggtca
agtataatgatctatctatctatccattcatccatttattttcatcctca
tctatcatctatctttctatctatatctatttattaatcatctatttgtt
taatgtatcctatccatctaaatctattacccatttttgtctatccattt
catttctccttcaattcctgtcataaaaagtgtattaatatgtgttatga
tcaacccatgttcgattttaatctccttctggatttattttgccagccga
attcttatctttttcacgctatttcaaatatctgtttccatcttaggctc
acttatgtttttcttttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_49812259_49812876
seq2: B6Ng01-019G20.b_46_663

seq1  GAATTCCATGTTCTATCTCTGTGACTCAACTTTGGTGGATCTTCCTCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGTTCTATCTCTGTGACTCAACTTTGGTGGATCTTCCTCTCA  50

seq1  CTTTCAGGCTATCATTGCTTAAAATAAAAAAGATGGTATTTTTTTTTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGGCTATCATTGCTTAAAATAAAAAAGATGGTATTTTTTTTTTAA  100

seq1  TCAGAGAATATATAAATTCTTGTTATTTATTTATTTATTCATTTAGTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGAATATATAAATTCTTGTTATTTATTTATTTATTCATTTAGTTTT  150

seq1  AATTAGATATTTTCTTTATTTACATTTCAAAAGTTATCCCCTTTCCTAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGATATTTTCTTTATTTACATTTCAAAAGTTATCCCCTTTCCTAGT  200

seq1  TTCCTCTCTGAAAATCCCCTATCCTCTTCCCCCTCCCCCTGCTCCCCAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTCTGAAAATCCCCTATCCTCTTCCCCCTCCCCCTGCTCCCCAAC  250

seq1  CCACCCACTCCCTCTTCTTAGCCCAGGCATTCCCCTATACTAGGGCATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCACTCCCTCTTCTTAGCCCAGGCATTCCCCTATACTAGGGCATAG  300

seq1  TACCTTCACAGGACCAAGGGCATCTCCTCCCATTGATGACCAACTAGGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTCACAGGACCAAGGGCATCTCCTCCCATTGATGACCAACTAGGCC  350

seq1  ATCCTCAGCTACATATGCAGCTAAAGCTATGAGTCTTTCCATATGTCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCAGCTACATATGCAGCTAAAGCTATGAGTCTTTCCATATGTCTTC  400

seq1  TTTGATTGGTGGTTTAGTCCCAGGGACCTCTGGGGTTACTGGTTAGTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTGGTGGTTTAGTCCCAGGGACCTCTGGGGTTACTGGTTAGTTTA  450

seq1  TATTGTTGTTCCTCCTAGGGGCCTGCAAATGCCTTCAGCTCCTTGGGTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTGTTCCTCCTAGGGGCCTGCAAATGCCTTCAGCTCCTTGGGTAC  500

seq1  TTTCTCTAACTCCTCCATTGTGGACCCTGTGCTCTGTCTAATGGATGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTAACTCCTCCATTGTGGACCCTGTGCTCTGTCTAATGGATGACT  550

seq1  GTCAGCATCCACTTCTGTATTAGTCAGGCACTGGCATAGCCTCTCAGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCATCCACTTCTGTATTAGTCAGGCACTGGCATAGCCTCTCAGGAG  600

seq1  ACAGCTATATCAGTCTCC  618
      ||||||||||||||||||
seq2  ACAGCTATATCAGTCTCC  618

seq1: chr3_49896883_49898070
seq2: B6Ng01-019G20.g_68_1236 (reverse)

seq1  TGAAAATAGGAAAAAACAATAAAGGTGAGCCTAAGATGGGAAACAGATAT  50
      ||||||   ||||||   ||||  ||||||||||||| ||||||||||| 
seq2  TGAAAA---GAAAAA--CATAA--GTGAGCCTAAGAT-GGAAACAGATA-  41

seq1  TTTGAAATATAGGCTGGAAAAAGAGTAAGAAAATTGGGCT-GCAAAATAA  99
      |||||||||   ||  |||||||| ||||  |||| |||| |||||||||
seq2  TTTGAAATA---GCGTGAAAAAGA-TAAG--AATTCGGCTGGCAAAATAA  85

seq1  AT-CAGAAGGAGATTAAAATCGAACATTGTGGGTTTGATCAT-ACACATA  147
      || ||||||||||||||||||||||||    || |||||||| |||||||
seq2  ATCCAGAAGGAGATTAAAATCGAACAT----GGGTTGATCATAACACATA  131

seq1  -TAATACACTGTTTTATGACAGGAAATTGAGAGAGAAAATGGAAATGGAT  196
       ||||||||| |||||||||||| ||||||  ||||||   |||||||||
seq2  TTAATACACT-TTTTATGACAGG-AATTGAAGGAGAAA--TGAAATGGAT  177

seq1  AGACATAAATGGGTAATAGATATAGATGGATAGGATACATTAAACAAATA  246
      ||||| ||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGACAAAAATGGGTAATAGATTTAGATGGATAGGATACATTAAACAAATA  227

seq1  GATGATTAATAAATAGATATAGATAGAAAGATAGATGATAGATGAGGATG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATTAATAAATAGATATAGATAGAAAGATAGATGATAGATGAGGATG  277

seq1  AAAATAAATGGATGAATGGATAGATAGATAGATCATTATACTTGACCTGG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAATGGATGAATGGATAGATAGATAGATCATTATACTTGACCTGG  327

seq1  ACAAGTTTCTTGGATATGTTATCTAGTTCCTTTGGTTTCTTTTAGTCATT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTTTCTTGGATATGTTATCTAGTTCCTTTGGTTTCTTTTAGTCATT  377

seq1  GCTTTAGCCTCTGTATAGTTGATGTATCTAAATTTTTATTAAAGTAAGTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAGCCTCTGTATAGTTGATGTATCTAAATTTTTATTAAAGTAAGTC  427

seq1  TAAGGGTAAAATACTGTGTATGCTTTTGTTGGTGAAGGTTTTGCTTCTGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGTAAAATACTGTGTATGCTTTTGTTGGTGAAGGTTTTGCTTCTGT  477

seq1  TAGGAATCATTTTATGTAGCTCTTTTTATAAAGTAGGAACTGAACATACA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAATCATTTTATGTAGCTCTTTTTATAAAGTAGGAACTGAACATACA  527

seq1  GAAAAATGAATTGGCTACAGCACATTTTAGAATATGTCTTACAGAAAGCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATGAATTGGCTACAGCACATTTTAGAATATGTCTTACAGAAAGCT  577

seq1  ATTTGGTAGCAACTAATTTTCTCTTCCATAAACTAGTGGAAGCCATTTCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGTAGCAACTAATTTTCTCTTCCATAAACTAGTGGAAGCCATTTCA  627

seq1  AATCATTTTTCGATCAGTAACTTTACTAATACTATGTTCAAACCATTGGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTTTTCGATCAGTAACTTTACTAATACTATGTTCAAACCATTGGT  677

seq1  CCATAGTGTTTCCTCAATTGTGTTGAGACCTCAAAGAATCAAAAACTAGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGTGTTTCCTCAATTGTGTTGAGACCTCAAAGAATCAAAAACTAGA  727

seq1  AGGGAGTGAATATATGCACCTTCCCAACACTTTATCCAATAACAAGATAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGTGAATATATGCACCTTCCCAACACTTTATCCAATAACAAGATAG  777

seq1  GCATAAAATTTTAATTGTCACATAAGGACCACATGGTTTAATGAAAGCAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAAATTTTAATTGTCACATAAGGACCACATGGTTTAATGAAAGCAA  827

seq1  TATAATTAAGTTTGTACATCAGGTTCACCTGAGGGATGTTCTGAACTCTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTAAGTTTGTACATCAGGTTCACCTGAGGGATGTTCTGAACTCTC  877

seq1  AGCTATTATGTATAAGGCTGCTAGTATGGAAATAAGGAGGGAGAAGGGAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATTATGTATAAGGCTGCTAGTATGGAAATAAGGAGGGAGAAGGGAG  927

seq1  GGGGAGAGAAAGGAATCAAGGAAGGAAGAAAGAAAAGAGAAAGGGAGGAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGAGAAAGGAATCAAGGAAGGAAGAAAGAAAAGAGAAAGGGAGGAA  977

seq1  AGGAAGAAAAGAAGAGAGGGATATTTATAAAAACTATTTTCCTCTCATCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAAAAGAAGAGAGGGATATTTATAAAAACTATTTTCCTCTCATCT  1027

seq1  ATAAAAGCTTTTATTGTTGCCACTGTATAACAGATAAAATTGCCCTTTTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGCTTTTATTGTTGCCACTGTATAACAGATAAAATTGCCCTTTTT  1077

seq1  AAATTGTATTTTTACAATTGTCTGCCACACATTGCCACTGACACTGAATA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTATTTTTACAATTGTCTGCCACACATTGCCACTGACACTGAATA  1127

seq1  CACAATCTATATTTTTGCTTCCTCTGGCACTTTACTGAATTC  1188
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATCTATATTTTTGCTTCCTCTGGCACTTTACTGAATTC  1169