BAC Information

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BAC

Clone NameB6Ng01-019H22
Chromosome3 (Build37)
Map Location 109,953,649 - 110,074,739
singlet/doubletdoublet
Overlap geneLOC100043183, Prmt6
Upstream geneSlc25a24, Vav3, Ntng1, LOC100043181
Downstream geneLOC100043190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019H22.bB6Ng01-019H22.g
ACCDH852564DH852565
length9881,156
definitionDH852564|Mus musculus domesticus DNA, BAC clone: B6Ng01-019H22, 5' end.DH852565|Mus musculus domesticus DNA, BAC clone: B6Ng01-019H22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,074,186 - 110,074,739)(109,953,649 - 109,954,807)
sequence
gaattcttaattacgatcattacactgtcccaataataccctaaggccta
tcaattaggaaacaaaacaatgctcatcagaaaaccaagagggtatttgt
tcaaagcagctagaaaatttagtataaaatttaaatgtctgcaatacaga
gtaggaatggtatttttatagtaggagaattgtcctcagttttatgggat
atgaactcactaacacttgtgcattggtgttcatcttcatttttccattt
ataaacagttcaggattgcctacctagggagtggcattgcccatactgaa
ttgggtcgtcccatatcaattaacttaattattatgacaatccttcattg
atatgcccacagaccaaatcagtgtagacagtccctcattgatattctcc
tccaaaagcaggaatattgctctcagaaaaaaaaaaaaaaaaaaaaaaca
gtaatgattccattgaactggaagttaagaatggcgctctcaccaccctg
cctctgaatcaagatggaaaaagatatgacaatgttgaatggaaaaggtg
gactactactccacaaagaattgtagagatataaaggcatctctaactga
tggggatggagaagtagggggcatctacaggaagatacagagacctggga
taaggttgttgcccaagaatcaatggaagtgtccttagctattattcata
gcgttggggatatggaacctaaagatgccactcctgtagccacataaaat
ccccaatgaagtgatagcaacaccaacacagccataaaactttccaccca
aaatttattctctctacaagtaatgcagggactggggatggagcagagac
tgagggaacagccaaccaataactggcccaacttgagacccatcccatga
gcaatcccaacactattaatgatactcatatatatatatatatatgagtc
taacacgactgccttctgaaaggctctactcagcagct
gaattctttttctcttttgtggcagaaagttaattaggctcttacatagt
ttctgacctaaaggttgggagctatacatactggcactggaataaaaact
gaatcatcttttatattttttacctgccctcctcacatactcccactgcc
ttccacatttacatttacttgagtttttcttgatagctatgaaaaatcag
actttggaatcacttgttttgtcagtgataaaattatatcggtggctacc
accacaaagggtgagtctgcaacaagagagtgctagagtgtcagttatgg
tacagcagcacactcagacacacacacaggcacatgcacatacacataca
cacacatacacacacccacaggcacatatacacacatgcacacatacatt
cacacacacatacacacacacataagcacatgcacaggcatgcacacaca
tacagacacacacgtgcatacacacacacaagcacatgcatacacacatg
cacacacacacacacacacacacacacacacacacactgctgttaggatc
ttacaataactctgaaaaactgataggcaaagaaagctggatattcaaga
ctccttaaaatatttagaagtataaactttttacttccaacagaaaaaat
gacagagagacataagaagtttagcttgaaatctcctagacagacagaca
gaccaacagaaagacagggaaagagatagacatatttcaagaggaatttt
tctcagaaattccaacatgatagaaaaagcagatagaaaaatagaagtaa
acgagggagctccagcctgtgttgtctgactctgttatgtgagtcatttt
cacttcttacctctctcaattataaaataagggcttgggtttgatgaatc
aaaggcagtccgcaggttcccggcctctggaggacctgttatgaagcagg
tagctgggctcttcccacagccaccggatcagcatccaccttgggggatt
cctgctgaaacacatggaggtctggggtggctcaagcttaaactatgctt
cacactccttatattttgagtcctgccttgagggtagggatatttttaat
ggaggttaaggtaaagaagatctagcactcatatttttggatatgatgat
ctctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_110074186_110074739
seq2: B6Ng01-019H22.b_44_597 (reverse)

seq1  AGTCCACCTTTTCCATTCAACATTGTCATATCTTTTTCCATCTTGATTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCACCTTTTCCATTCAACATTGTCATATCTTTTTCCATCTTGATTCA  50

seq1  GAGGCAGGGTGGTGAGAGCGCCATTCTTAACTTCCAGTTCAATGGAATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGGGTGGTGAGAGCGCCATTCTTAACTTCCAGTTCAATGGAATCA  100

seq1  TTACTGTTTTTTTTTTTTTTTTTTTTTTCTGAGAGCAATATTCCTGCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTTTTTTTTTTTTTTTTTTTTTTCTGAGAGCAATATTCCTGCTTT  150

seq1  TGGAGGAGAATATCAATGAGGGACTGTCTACACTGATTTGGTCTGTGGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGAGAATATCAATGAGGGACTGTCTACACTGATTTGGTCTGTGGGC  200

seq1  ATATCAATGAAGGATTGTCATAATAATTAAGTTAATTGATATGGGACGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAATGAAGGATTGTCATAATAATTAAGTTAATTGATATGGGACGAC  250

seq1  CCAATTCAGTATGGGCAATGCCACTCCCTAGGTAGGCAATCCTGAACTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTCAGTATGGGCAATGCCACTCCCTAGGTAGGCAATCCTGAACTGT  300

seq1  TTATAAATGGAAAAATGAAGATGAACACCAATGCACAAGTGTTAGTGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAATGGAAAAATGAAGATGAACACCAATGCACAAGTGTTAGTGAGT  350

seq1  TCATATCCCATAAAACTGAGGACAATTCTCCTACTATAAAAATACCATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATCCCATAAAACTGAGGACAATTCTCCTACTATAAAAATACCATTC  400

seq1  CTACTCTGTATTGCAGACATTTAAATTTTATACTAAATTTTCTAGCTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCTGTATTGCAGACATTTAAATTTTATACTAAATTTTCTAGCTGCT  450

seq1  TTGAACAAATACCCTCTTGGTTTTCTGATGAGCATTGTTTTGTTTCCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACAAATACCCTCTTGGTTTTCTGATGAGCATTGTTTTGTTTCCTAA  500

seq1  TTGATAGGCCTTAGGGTATTATTGGGACAGTGTAATGATCGTAATTAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAGGCCTTAGGGTATTATTGGGACAGTGTAATGATCGTAATTAAGA  550

seq1  ATTC  554
      ||||
seq2  ATTC  554

seq1: chr3_109953649_109954807
seq2: B6Ng01-019H22.g_69_1224

seq1  GAATTCTTTTTCTCTTTTGTGGCAGAAAGTTAATTAGGCTCTTACATAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTCTCTTTTGTGGCAGAAAGTTAATTAGGCTCTTACATAGT  50

seq1  TTCTGACCTAAAGGTTGGGAGCTATACATACTGGCACTGGAATAAAAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACCTAAAGGTTGGGAGCTATACATACTGGCACTGGAATAAAAACT  100

seq1  GAATCATCTTTTATATTTTTTACCTGCCCTCCTCACATACTCCCACTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCATCTTTTATATTTTTTACCTGCCCTCCTCACATACTCCCACTGCC  150

seq1  TTCCACATTTACATTTACTTGAGTTTTTCTTGATAGCTATGAAAAATCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACATTTACATTTACTTGAGTTTTTCTTGATAGCTATGAAAAATCAG  200

seq1  ACTTTGGAATCACTTGTTTTGTCAGTGATAAAATTATATCGGTGGCTACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGGAATCACTTGTTTTGTCAGTGATAAAATTATATCGGTGGCTACC  250

seq1  ACCACAAAGGGTGAGTCTGCAACAAGAGAGTGCTAGAGTGTCAGTTATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAAAGGGTGAGTCTGCAACAAGAGAGTGCTAGAGTGTCAGTTATGG  300

seq1  TACAGCAGCACACTCAGACACACACACAGGCACATGCACATACACATACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCAGCACACTCAGACACACACACAGGCACATGCACATACACATACA  350

seq1  CACACATACACACACCCACAGGCACATATACACACATGCACACATACATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATACACACACCCACAGGCACATATACACACATGCACACATACATT  400

seq1  CACACACACATACACACACACATAAGCACATGCACAGGCATGCACACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACATACACACACACATAAGCACATGCACAGGCATGCACACACA  450

seq1  TACAGACACACACGTGCATACACACACACAAGCACATGCATACACACATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGACACACACGTGCATACACACACACAAGCACATGCATACACACATG  500

seq1  CACACACACACACACACACACACACACACACACACACTGCTGTTAGGATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACTGCTGTTAGGATC  550

seq1  TTACAATAACTCTGAAAAACTGATAGGCAAAGAAAGCTGGATATTCAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAATAACTCTGAAAAACTGATAGGCAAAGAAAGCTGGATATTCAAGA  600

seq1  CTCCTTAAAATATTTAGAAGTATAAACTTTTTACTTCCAACAGAAAAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTAAAATATTTAGAAGTATAAACTTTTTACTTCCAACAGAAAAAAT  650

seq1  GACAGAGAGACATAAGAAGTTTAGCTTGAAATCTCCTAGACAGACAGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGAGACATAAGAAGTTTAGCTTGAAATCTCCTAGACAGACAGACA  700

seq1  GACCAACAGAAAGACAGGGAAAGAGATAGACATATTTCAAGAGGAATTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAACAGAAAGACAGGGAAAGAGATAGACATATTTCAAGAGGAATTTT  750

seq1  TCTCAGAAATTCCAACATGATAGAAAAAGCAGATAGAAAAATAGAAGTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGAAATTCCAACATGATAGAAAAAGCAGATAGAAAAATAGAAGTAA  800

seq1  ACGAGGGAGCTCCAGCCTGTGTTGTCTGACTCTGTTATGTGAGTCATTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGGGAGCTCCAGCCTGTGTTGTCTGACTCTGTTATGTGAGTCATTTT  850

seq1  CACTTCTTACCTCTCTCAATTATAAAATAAGGGCTTGGGTTTGATGAATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCTTACCTCTCTCAATTATAAAATAAGGGCTTGGGTTTGATGAATC  900

seq1  AAAGGCAGTCCGCAGGTTCCCGGCCTCTGGAGGACCTGTTATGAAGCAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCAGTCCGCAGGTTCCCGGCCTCTGGAGGACCTGTTATGAAGCAGG  950

seq1  TAGCTGGGCTCTTCCCACAGCCACCGAATCAGCATCCA-CTTGGGGGATT  999
      |||||||||||||||||||||||||| ||||||||||| |||||||||||
seq2  TAGCTGGGCTCTTCCCACAGCCACCGGATCAGCATCCACCTTGGGGGATT  1000

seq1  CCTGCTGAAACACAATGAAGTCT-GGGTGGCTCAAGCTTAAACTATGCTT  1048
      ||||||||||||||  || |||| ||||||||||||||||||||||||||
seq2  CCTGCTGAAACACATGGAGGTCTGGGGTGGCTCAAGCTTAAACTATGCTT  1050

seq1  CACACT-CTTATATTTTGAGTCTTGCTTTGA-GGTAGGGATTAATTTAAA  1096
      |||||| ||||||||||||||| ||| |||| |||||||| || ||| ||
seq2  CACACTCCTTATATTTTGAGTCCTGCCTTGAGGGTAGGGA-TATTTTTAA  1099

seq1  TGAAGTTTAAGGTAAGAAAGAAATCTAGTCATCATATTTTTGGATAATGG  1146
      || || |||||||||  |||  ||||||   |||||||||||||| ||| 
seq2  TGGAGGTTAAGGTAAAGAAG--ATCTAGCACTCATATTTTTGGAT-ATG-  1145

seq1  ATAGAATCTCTGA  1159
        |  ||||||||
seq2  --ATGATCTCTGA  1156