BAC Information

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BAC

Clone NameB6Ng01-019J14
Chromosome3 (Build37)
Map Location 3,610,806 - 3,751,470
singlet/doubletdoublet
Overlap geneHnf4g
Upstream geneLOC667655, LOC100039140
Downstream geneEG383815, LOC100039157, LOC100039167, LOC667709
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019J14.bB6Ng01-019J14.g
ACCDH852641DH852642
length1,102949
definitionDH852641|Mus musculus domesticus DNA, BAC clone: B6Ng01-019J14, 5' end.DH852642|Mus musculus domesticus DNA, BAC clone: B6Ng01-019J14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,610,806 - 3,611,909)(3,750,519 - 3,751,470)
sequence
gaattctctcatattttacctggaacactttttaggaaaggacacttttt
aatctgtacaggtttatttaactacaaatacactggaatttgaaaagagt
ttgtgaacttagtaagactttaaaatggattaaatatagattttgaaaag
cttctgagagctggaatcagaacttttatctctattggtcaagacgccat
gtacctatgttagaaccttttcaatgtgtcagtattcctaaatactatgc
ccactgatgttctttgagtactctttgtgatagctggtcaagtgctcagg
ccctttctaagtccagtttggctccttttgctttatcattctgctgtgta
gtttttctgttgggtgtttgagtacatgtatgtaagcagttaaaaatgag
ggctttcctgttgaaatcagtccaaagctccctaaaggatacttttaagg
aggtaggataagtttcttggctactttggcttctttatacttttgttttg
ttttgttttctgtaagttgtggcatctattgggataggtcaaggatttcc
tgatcatgtgacattccttgaaaacactgggggcattttcatctttaatg
atgctccttttacagactcttcactggatagagtcaagtgcctgaggtct
ttgaaaggtctttgatcatgtggataggtgccttaccagagtacaaagac
cctgtaaaggcacctcactatcctctgggacttaccttgtacatgggggt
aagggtcaaggaaaaaatattggctcacctctttggccttttatattcat
tgactttggtctccatgtcgcactgttgaataccaggagatcagaggcaa
aggaaacaaaaaaatgagttctagcttttagataagcttagtaatttggc
acctctagctctcagatgtgtactcacttttaatcacatacacaacctca
aattatcttgatgacctaaaataattgtcatgttgatttgtgttttatgg
ctttgatgtttttttaacaaatttatattatttttttaggataaaatatt
ttatattggataagaaaattttatttcttacgtctaagcacccctaggtc
tc

gaattctatgaaaattttgaataaagagagtaggagatattggtagttat
cagataggtgaaatgaaattaagaataaagcaaaatagaagatgaaaaga
catcttagattcttgaaaaaacctacctaattacagctattctgatgtca
ctgagtggaaatcaagttgctctagtatacccaattaatatcattaatta
gctagaaatcaccacacatgatttaagttctaaaagcaaacagtattttt
tttttttaatcagcacaggcactctaatagaaaatgaaaacattttattt
tgtctttctccctctaaatgttcaagggtatgctataaatatttaaaagc
tgtgatatacagccataggactgagaatcagtggattgcagtaatctgta
cctggtaatatgtttaggacaatgatgttcatcacaaagatgtattgtag
gaggcatgctggggggagggtgagaggaaaatcacagagccaagggaggg
acagacaccactcacggacttctgttcgaaagccagaaagttctttagaa
tgggcctcttagaaagctaggatcagcaaagttttcctcttagttattgg
aatcaaactgagagtgatttttaagaatcataattatttttaaaaggcaa
actaaaatttgaactaacttaaataatgacagacccatagaaaacttgta
atttaagaaatagaggctacctgtgtagaaaagtatataagcaaaatata
taaacagaagaaactcaaactacgaaaaactataggtgtcaggaagtact
taaataaatggcatcagagtaaaaccatcccaaggtatcccagcaactct
gtgctctgtccttttgctgtatgctcattctcagtcactcttccctcatt
gtggtttagtttgtcagacttggaaaactgacagtttgctaatcttttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_3610806_3611909
seq2: B6Ng01-019J14.b_43_1144

seq1  GAATTCTCTCATATTTTACCTGGAACACTTTTTAGGAAAGGACACTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCATATTTTACCTGGAACACTTTTTAGGAAAGGACACTTTTT  50

seq1  AATCTGTACAGGTTTATTTAACTACAAATACACTGGAATTTGAAAAGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGTACAGGTTTATTTAACTACAAATACACTGGAATTTGAAAAGAGT  100

seq1  TTGTGAACTTAGTAAGACTTTAAAATGGATTAAATATAGATTTTGAAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAACTTAGTAAGACTTTAAAATGGATTAAATATAGATTTTGAAAAG  150

seq1  CTTCTGAGAGCTGGAATCAGAACTTTTATCTCTATTGGTCAAGACGCCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGAGAGCTGGAATCAGAACTTTTATCTCTATTGGTCAAGACGCCAT  200

seq1  GTACCTATGTTAGAACCTTTTCAATGTGTCAGTATTCCTAAATACTATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTATGTTAGAACCTTTTCAATGTGTCAGTATTCCTAAATACTATGC  250

seq1  CCACTGATGTTCTTTGAGTACTCTTTGTGATAGCTGGTCAAGTGCTCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGATGTTCTTTGAGTACTCTTTGTGATAGCTGGTCAAGTGCTCAGG  300

seq1  CCCTTTCTAAGTCCAGTTTGGCTCCTTTTGCTTTATCATTCTGCTGTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCTAAGTCCAGTTTGGCTCCTTTTGCTTTATCATTCTGCTGTGTA  350

seq1  GTTTTTCTGTTGGGTGTTTGAGTACATGTATGTAAGCAGTTAAAAATGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCTGTTGGGTGTTTGAGTACATGTATGTAAGCAGTTAAAAATGAG  400

seq1  GGCTTTCCTGTTGAAATCAGTCCAAAGCTCCCTAAAGGATACTTTTAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTCCTGTTGAAATCAGTCCAAAGCTCCCTAAAGGATACTTTTAAGG  450

seq1  AGGTAGGATAAGTTTCTTGGCTACTTTGGCTTCTTTATACTTTTGTTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGGATAAGTTTCTTGGCTACTTTGGCTTCTTTATACTTTTGTTTTG  500

seq1  TTTTGTTTTCTGTAAGTTGTGGCATCTATTGGGATAGGTCAAGGATTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTCTGTAAGTTGTGGCATCTATTGGGATAGGTCAAGGATTTCC  550

seq1  TGATCATGTGACATTCCTTGAAAACACTGGGGGCATTTTCATCTTTAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCATGTGACATTCCTTGAAAACACTGGGGGCATTTTCATCTTTAATG  600

seq1  ATGCTCCTTTTACAGACTCTTCACTGGATAGAGTCAAGTGCCTGAGGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCCTTTTACAGACTCTTCACTGGATAGAGTCAAGTGCCTGAGGTCT  650

seq1  TTGAAAGGTCTTTGATCATGTGGATAGGTGCCTTACCAGAGTACAAAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGGTCTTTGATCATGTGGATAGGTGCCTTACCAGAGTACAAAGAC  700

seq1  CCTGTAAAGGCACCTCACTATCCTCTGGGACTTACCTTGTACATGGGGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAAAGGCACCTCACTATCCTCTGGGACTTACCTTGTACATGGGGGT  750

seq1  AAGGGTCAAGGAAAAAATATTGGCTCACCTCTTTGGCCTTTTATATTCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTCAAGGAAAAAATATTGGCTCACCTCTTTGGCCTTTTATATTCAT  800

seq1  TGACTTTGGTCTCCATGTCGCACTGTTGAATACCAGGAGATCAGAGGCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTGGTCTCCATGTCGCACTGTTGAATACCAGGAGATCAGAGGCAA  850

seq1  AGGAAACAAAAAAATGAGTTCTAGCTTTTAGATAAGCTTAGTAATTTGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACAAAAAAATGAGTTCTAGCTTTTAGATAAGCTTAGTAATTTGGC  900

seq1  ACCTCTAGCTCTCAGATGTGTACTCACTTTTAATCACATACACAACCTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTAGCTCTCAGATGTGTACTCACTTTTAATCACATACACAACCTCA  950

seq1  AATTATCTTGATGACCTAAAATAATTGTCATGTTGATTTGTGTTTTATGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATCTTGATGACCTAAAATAATTGTCATGTTGATTTGTGTTTTATGG  1000

seq1  CTTTGATGTTTTTATAACAAATTTATATTATTTTATAAGAAT-AAATATT  1049
      ||||||||||||| |||||||||||||||||||| | || || |||||||
seq2  CTTTGATGTTTTTTTAACAAATTTATATTATTTTTTTAGGATAAAATATT  1050

seq1  TTATTATTGTATAAGAAATATTTTATTTCTTACTGCTAAGCAACCCTCAG  1099
      ||| ||||| |||||||| ||||||||||||||  ||||||| |||| ||
seq2  TTA-TATTGGATAAGAAA-ATTTTATTTCTTACGTCTAAGCACCCCT-AG  1097

seq1  GTCTC  1104
      |||||
seq2  GTCTC  1102


seq1: chr3_3750519_3751470
seq2: B6Ng01-019J14.g_67_1015 (reverse)

seq1  GAAAAGATTAGCAAACTGTCATGTTTTCCAAGTCTGACAACTAAAACCAA  50
      ||||||||||||||||||||| ||||||||||||||||||   ||||| |
seq2  GAAAAGATTAGCAAACTGTCA-GTTTTCCAAGTCTGACAAACTAAACC-A  48

seq1  CAATGAGGGAAGAGTGACTGAGAATGAGCATACAGCAAAAGGACAGAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAGGGAAGAGTGACTGAGAATGAGCATACAGCAAAAGGACAGAGCA  98

seq1  CAGAGTTGCTGGGATACCTTGGGATGGTTTTACTCTGATGCCATTTATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTGCTGGGATACCTTGGGATGGTTTTACTCTGATGCCATTTATTT  148

seq1  AAGTACTTCCTGACACCTATAGTTTTTCGTAGTTTGAGTTTCTTCTGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACTTCCTGACACCTATAGTTTTTCGTAGTTTGAGTTTCTTCTGTTT  198

seq1  ATATATTTTTGCTTATATACTTTTCTACACAGGTAGCCTCTATTTCTTAA  250
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATA-TTTTGCTTATATACTTTTCTACACAGGTAGCCTCTATTTCTTAA  247

seq1  ATTACAAGTTTTCTATGGGTCTGTCATTATTTAAGTTAGTTCAAATTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAAGTTTTCTATGGGTCTGTCATTATTTAAGTTAGTTCAAATTTTA  297

seq1  GTTTGCCTTTTAAAAATAATTATGATTCTTAAAAATCACTCTCAGTTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCCTTTTAAAAATAATTATGATTCTTAAAAATCACTCTCAGTTTGA  347

seq1  TTCCAATAACTAAGAGGAAAACTTTGCTGATCCTAGCTTTCTAAGAGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAATAACTAAGAGGAAAACTTTGCTGATCCTAGCTTTCTAAGAGGCC  397

seq1  CATTCTAAAGAACTTTCTGGCTTTCGAACAGAAGTCCGTGAGTGGTGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTAAAGAACTTTCTGGCTTTCGAACAGAAGTCCGTGAGTGGTGTCT  447

seq1  GTCCCTCCCTTGGCTCTGTGATTTTCCTCTCACCCTCCCCCCAGCATGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTCCCTTGGCTCTGTGATTTTCCTCTCACCCTCCCCCCAGCATGCC  497

seq1  TCCTACAATACATCTTTGTGATGAACATCATTGTCCTAAACATATTACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACAATACATCTTTGTGATGAACATCATTGTCCTAAACATATTACCA  547

seq1  GGTACAGATTACTGCAATCCACTGATTCTCAGTCCTATGGCTGTATATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACAGATTACTGCAATCCACTGATTCTCAGTCCTATGGCTGTATATCA  597

seq1  CAGCTTTTAAATATTTATAGCATACCCTTGAACATTTAGAGGGAGAAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTTTAAATATTTATAGCATACCCTTGAACATTTAGAGGGAGAAAGA  647

seq1  CAAAATAAAATGTTTTCATTTTCTATTAGAGTGCCTGTGCTGATTAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAAAATGTTTTCATTTTCTATTAGAGTGCCTGTGCTGATTAAAAA  697

seq1  AAAAAAATACTGTTTGCTTTTAGAACTTAAATCATGTGTGGTGATTTCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATACTGTTTGCTTTTAGAACTTAAATCATGTGTGGTGATTTCTA  747

seq1  GCTAATTAATGATATTAATTGGGTATACTAGAGCAACTTGATTTCCACTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATTAATGATATTAATTGGGTATACTAGAGCAACTTGATTTCCACTC  797

seq1  AGTGACATCAGAATAGCTGTAATTAGGTAGGTTTTTTCAAGAATCTAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACATCAGAATAGCTGTAATTAGGTAGGTTTTTTCAAGAATCTAAGA  847

seq1  TGTCTTTTCATCTTCTATTTTGCTTTATTCTTAATTTCATTTCACCTATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTTCATCTTCTATTTTGCTTTATTCTTAATTTCATTTCACCTATC  897

seq1  TGATAACTACCAATATCTCCTACTCTCTTTATTCAAAATTTTCATAGAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAACTACCAATATCTCCTACTCTCTTTATTCAAAATTTTCATAGAAT  947

seq1  TC  952
      ||
seq2  TC  949


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