BAC Information

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BAC

Clone NameB6Ng01-019K18
Chromosome3 (Build37)
Map Location 60,835,623 - 61,031,739
singlet/doubletdoublet
Overlap genenone
Upstream geneAadac, Sucnr1, LOC669823, LOC100040485, Mbnl1, LOC676933, LOC100040501, EG666853, P2ry1
Downstream geneRap2b, LOC666891, LOC669910, LOC676965
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019K18.bB6Ng01-019K18.g
ACCDH852696DH852697
length1,174958
definitionDH852696|Mus musculus domesticus DNA, BAC clone: B6Ng01-019K18, 5' end.DH852697|Mus musculus domesticus DNA, BAC clone: B6Ng01-019K18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,030,533 - 61,031,739)(60,835,623 - 60,836,569)
sequence
gaattctaaatataatgtatttaatgcacatctaaatatagtgtatcaaa
tcttcttcgtatggtagtccagaaatacagattctcagaaggaatttctt
tgattaaaaagttaaggtcaaagaaatttccttagtttacaattacacta
ttgatatctcaatgggccacatctcatccctgctgactcagaaccatacc
aaaccctgaccaactaattatgtaaaatggaaatctcggtgaacttaact
gacacatagtttatttctgctgaatgtaagatccagacatgttttcttcc
ccttgagttatctgtccacatctttggtccatttatttttccaatgagtt
attaatttttgcagaaccattctacgtataacagaaattaactttgaaaa
ataatacgagtagtaagttttcttgctcttgcattatgtaacagaaatta
acttttaaataacagaaattaactttgaaaatgatatgagtagtaagttt
tcttgctctgattatgatattcataagtatatcaaagtttacaatgagac
caaatataaataaaacattttagggattcaaaatatttgagtaatacttt
aaagatcatgccaacttgaagttataagataaatccaatcttattgtttt
ttattatgttatttaatttttatgttaaatttttacttatggataaatag
ggagagcatcttacttgttttccaacctaggctattaatttgttttaata
tcatttattaaagttttctcatttcccagtcatttgataggcagcctttt
ctttcttttaaggctcattcttcacattttaggcacttcatatttgtttg
atttgtccttttgccatccaggaatgatttctatactgtctcatttttag
atgatataaaattctttaatgtgtggtaaagctgtttttcaccgactctt
aacttttcctatacaattctgtatagctgaaatttttttgttgtttggtt
tgtttgttttcgaaacaagtttctcctgtatagcctggctgtcctggact
cactttgagacaagctggcttgaactcaaatccgcctgctctgccccgaa
gctgggattaagcttgggccccccatctgcttagctgattattgacgaat
attattcaccaattcctttctgag
gaattcagggcaattgctccaaagatagatgcctaagttcagttttgtca
tttttttactattaatctgagggacctttctcagtttcagttcccttgcc
tgtaagacagaatgagtacatatgactgagttttatcagaataacaactc
cacacacagcccttgcaaaagtgccttgaatgtagtggtactcaatgaac
accagctgtgaaaaagtagaacagactccacaagtgtgtgcctatggact
tggaatacacacggcacagtgtaagtgttcctcgtgattccttactgcat
cttctagtttgtgtgagagcacaaagcaatcctctctctttataaagagc
tactacatgatctttgaagcaggctatgggcaggctgctgggctaatggc
tttcatttgtctttccagagccaccccccatgatcctctctctttgaact
gctgccttaagaggtgaccatgtcctcttcccagctcctactctcactgc
tgttcttgttagatgcagctggagagactggagaaatgagaaagaaaagg
gtgagagtctgagccacacctttcctctctcacgagctgtggatgtgcgc
cctaaataccaggaagctccttctatggccgtgatccttatctatttcta
taaaccctcatcctttcctccttctagcttagcagcactactccccgcta
gttctcttttttggagcacctgtgcctcattatccattattacctccctt
gacatgtcaataaacatgactcaagatttttttttgttatgtgaatttct
aattagataatcttctgataattacacacttttataatatgttagtactg
tgtgccagagtctttctaagttgacatgttctaaattccatatttgtatt
atattatgggtatgtagaatataaataattatgaggaatgtcctacttcg
actcttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_61030533_61031739
seq2: B6Ng01-019K18.b_45_1218 (reverse)

seq1  CTCAGTAAGGAATTGGTTGAATAAATAAATCTGTCCAATAAAAATTTCAG  50
      ||||| |||||||||| ||||||   | ||  || ||||||     ||||
seq2  CTCAGAAAGGAATTGG-TGAATA---ATATTCGT-CAATAA-----TCAG  40

seq1  CTATAGCCAGATGTGGTGGCGCAAGACTTTAATCCCAGCATTCAGGAGGC  100
      ||| || |||||| || ||| ||||   ||||||||||| |||  | |||
seq2  CTA-AG-CAGATG-GGGGGCCCAAG--CTTAATCCCAGC-TTC--GGGGC  82

seq1  AGAGGCAGGCGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAAAGTGAG  150
      ||| |||||||||||  ||||||||| ||||| || |||| |||||||||
seq2  AGA-GCAGGCGGATT--TGAGTTCAA-GCCAG-CTTGTCT-CAAAGTGAG  126

seq1  TTCCAGGACAGCCAGGGCTATACA-GAGAAACCCTGTGTCGAAAAACAAA  199
       ||||||||||||| ||||||||| |||||| | ||| ||||||   | |
seq2  -TCCAGGACAGCCA-GGCTATACAGGAGAAA-CTTGTTTCGAAA---ACA  170

seq1  AACAAACAAAACAAACAAAAAAAATTTCAGCTATACAGAATTGTATAGGG  249
      ||||||| ||||||   |||||||||||||||||||||||||||||| ||
seq2  AACAAACCAAACAA--CAAAAAAATTTCAGCTATACAGAATTGTATA-GG  217

seq1  AAAAGTTAAGAGTTCGGTGAAAAACAGCTTTACCACACATTAAAGAATTT  299
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTAAGAG-TCGGTGAAAAACAGCTTTACCACACATTAAAGAATTT  266

seq1  TATATCATCTTAAAAATGAGACAGTATAGAAATCATTCCTGGATGGCAAA  349
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TATATCATC-TAAAAATGAGACAGTATAGAAATCATTCCTGGATGGCAAA  315

seq1  AGGACAAATCAAAC-AATATGAAGTGCCTAAAATGTGAAGAATGAGCCTT  398
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AGGACAAATCAAACAAATATGAAGTGCCTAAAATGTGAAGAATGAGCCTT  365

seq1  AAAAGAAAGAAAAGGCTGCCTATCAAATGACTGGGAAATGAGAAAACTTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAGAAAAGGCTGCCTATCAAATGACTGGGAAATGAGAAAACTTT  415

seq1  AATAAATGATATTAAAACAAATTAATAGCCTAGGTTGGAAAACAAGTAAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATGATATTAAAACAAATTAATAGCCTAGGTTGGAAAACAAGTAAG  465

seq1  ATGCTCTCCCTATTTATCCATAAGTAAAAATTTAACATAAAAATTAAATA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCTCCCTATTTATCCATAAGTAAAAATTTAACATAAAAATTAAATA  515

seq1  ACATAATAAAAAACAATAAGATTGGATTTATCTTATAACTTCAAGTTGGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAATAAAAAACAATAAGATTGGATTTATCTTATAACTTCAAGTTGGC  565

seq1  ATGATCTTTAAAGTATTACTCAAATATTTTGAATCCCTAAAATGTTTTAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCTTTAAAGTATTACTCAAATATTTTGAATCCCTAAAATGTTTTAT  615

seq1  TTATATTTGGTCTCATTGTAAACTTTGATATACTTATGAATATCATAATC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTTGGTCTCATTGTAAACTTTGATATACTTATGAATATCATAATC  665

seq1  AGAGCAAGAAAACTTACTACTCATATCATTTTCAAAGTTAATTTCTGTTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAAGAAAACTTACTACTCATATCATTTTCAAAGTTAATTTCTGTTA  715

seq1  TTTAAAAGTTAATTTCTGTTACATAATGCAAGAGCAAGAAAACTTACTAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAGTTAATTTCTGTTACATAATGCAAGAGCAAGAAAACTTACTAC  765

seq1  TCGTATTATTTTTCAAAGTTAATTTCTGTTATACGTAGAATGGTTCTGCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTATTATTTTTCAAAGTTAATTTCTGTTATACGTAGAATGGTTCTGCA  815

seq1  AAAATTAATAACTCATTGGAAAAATAAATGGACCAAAGATGTGGACAGAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAATAACTCATTGGAAAAATAAATGGACCAAAGATGTGGACAGAT  865

seq1  AACTCAAGGGGAAGAAAACATGTCTGGATCTTACATTCAGCAGAAATAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAAGGGGAAGAAAACATGTCTGGATCTTACATTCAGCAGAAATAAA  915

seq1  CTATGTGTCAGTTAAGTTCACCGAGATTTCCATTTTACATAATTAGTTGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTGTCAGTTAAGTTCACCGAGATTTCCATTTTACATAATTAGTTGG  965

seq1  TCAGGGTTTGGTATGGTTCTGAGTCAGCAGGGATGAGATGTGGCCCATTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGTTTGGTATGGTTCTGAGTCAGCAGGGATGAGATGTGGCCCATTG  1015

seq1  AGATATCAATAGTGTAATTGTAAACTAAGGAAATTTCTTTGACCTTAACT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATCAATAGTGTAATTGTAAACTAAGGAAATTTCTTTGACCTTAACT  1065

seq1  TTTTAATCAAAGAAATTCCTTCTGAGAATCTGTATTTCTGGACTACCATA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATCAAAGAAATTCCTTCTGAGAATCTGTATTTCTGGACTACCATA  1115

seq1  CGAAGAAGATTTGATACACTATATTTAGATGTGCATTAAATACATTATAT  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGAAGATTTGATACACTATATTTAGATGTGCATTAAATACATTATAT  1165

seq1  TTAGAATTC  1207
      |||||||||
seq2  TTAGAATTC  1174

seq1: chr3_60835623_60836569
seq2: B6Ng01-019K18.g_68_1006

seq1  GAATTCAGGGCAATTGCTCCAAAGATAGATGCCTAAGTTCAGTTTTGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGCAATTGCTCCAAAGATAGATGCCTAAGTTCAGTTTTGTCA  50

seq1  TTTTTTTACTATTAATCTGAGGGACCTTTCTCAGTTTCAGTTCCCTTGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTACTATTAATCTGAGGGACCTTTCTCAGTTTCAGTTCCCTTGCC  100

seq1  TGTAAGACAGAATGAGTACATATGACTGAGTTTTATCAGAATAACAACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGACAGAATGAGTACATATGACTGAGTTTTATCAGAATAACAACTC  150

seq1  CACACACAGCCCTTGCAAAAGTGCCTTGAATGTAGTGGTACTCAATGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACAGCCCTTGCAAAAGTGCCTTGAATGTAGTGGTACTCAATGAAC  200

seq1  ACCAGCTGTGAAAAAGTAGAACAGACTCCACAAGTGTGTGCCTATGGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCTGTGAAAAAGTAGAACAGACTCCACAAGTGTGTGCCTATGGACT  250

seq1  TGGAATACACACGGCACAGTGTAAGTGTTCCTCGTGATTCCTTACTGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATACACACGGCACAGTGTAAGTGTTCCTCGTGATTCCTTACTGCAT  300

seq1  CTTCTAGTTTGTGTGAGAGCACAAAGCAATCCTCTCTCTTTATAAAGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAGTTTGTGTGAGAGCACAAAGCAATCCTCTCTCTTTATAAAGAGC  350

seq1  TACTACATGATCTTTGAAGCAGGCTATGGGCAGGCTGCTGGGCTAATGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACATGATCTTTGAAGCAGGCTATGGGCAGGCTGCTGGGCTAATGGC  400

seq1  TTTCATTTGTCTTTCCAGAGCCACCCCCCATGATCCTCTCTCTTTGAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTGTCTTTCCAGAGCCACCCCCCATGATCCTCTCTCTTTGAACT  450

seq1  GCTGCCTTAAGAGGTGACCATGTCCTCTTCCCAGCTCCTACTCTCACTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCTTAAGAGGTGACCATGTCCTCTTCCCAGCTCCTACTCTCACTGC  500

seq1  TGTTCTTGTTAGATGCAGCTGGAGAGACTGGAGAAATGAGAAAGAAAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTGTTAGATGCAGCTGGAGAGACTGGAGAAATGAGAAAGAAAAGG  550

seq1  GTGAGAGTCTGAGCCACACCTTTCCTCTCTCACGAGCTGTGGATGTGCGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGTCTGAGCCACACCTTTCCTCTCTCACGAGCTGTGGATGTGCGC  600

seq1  CCTAAATACCAGGAAGCTCCTTCTATGGCCGTGATCCTTATCTATTTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAATACCAGGAAGCTCCTTCTATGGCCGTGATCCTTATCTATTTCTA  650

seq1  TAAACCCTCATCCTTTCCTCCTTCTAGCTTAGCAGCACTACTCCCCGCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCCTCATCCTTTCCTCCTTCTAGCTTAGCAGCACTACTCCCCGCTA  700

seq1  GTTCTC-TTTTTGGAGCACCTGTGCCTCATTATCCATTATTACCTCCCTT  749
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTTTTTTGGAGCACCTGTGCCTCATTATCCATTATTACCTCCCTT  750

seq1  GACATGTCAATAAACATGACTCAAGATTTTTTTTTGTTATTGTGAATTTC  799
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GACATGTCAATAAACATGACTCAAGATTTTTTTTTGTTA-TGTGAATTTC  799

seq1  TAATTAGATAATCTTCTGATTATTTACACACTTTTATAATATGTTAGTAC  849
      ||||||||||||||||||| || |||||||||||||||||||||||||||
seq2  TAATTAGATAATCTTCTGA-TAATTACACACTTTTATAATATGTTAGTAC  848

seq1  TGTGTGCCAGGAGTCTTTCTAAGTTGACATGTTTCTAAATTCCATATTTT  899
      ||||||||| ||||||||||||||||||||| |||||||||||||| |||
seq2  TGTGTGCCA-GAGTCTTTCTAAGTTGACATG-TTCTAAATTCCATA-TTT  895

seq1  GTATTATATTATGGGTATGTAGAAATATAAAATAAATTAATTAGGAAT  947
      |||||||||||||||||||||| ||||| ||||||  | || ||||||
seq2  GTATTATATTATGGGTATGTAG-AATAT-AAATAA--TTATGAGGAAT  939