BAC Information

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BAC

Clone NameB6Ng01-020B22
Chromosome3 (Build37)
Map Location 123,125,477 - 123,227,387
singlet/doubletdoublet
Overlap genePrss12, EG668804
Upstream geneBcar3, Fnbp1l, Ppia-ps3_2252.1, Pde5a, LOC668792, Fabp2, 1810037I17Rik, Usp53, Myoz2, Synpo2, Sec24d, G430022H21Rik
Downstream geneNdst3, LOC100043333, EG668809, Tram1l1, LOC100043740, 1700006A11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020B22.bB6Ng01-020B22.g
ACCDH853009DH853010
length3171,055
definitionDH853009|Mus musculus domesticus DNA, BAC clone: B6Ng01-020B22, 5' end.DH853010|Mus musculus domesticus DNA, BAC clone: B6Ng01-020B22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,227,071 - 123,227,387)(123,125,477 - 123,126,547)
sequence
actatatattcagtattcctcataagtggtagagtcgcattcgtgcattt
attctttcatgtagtagagatatgtttaacgtttcctaacactttctttc
actaatcctgcagctaccctaacaaatacacagattagttagccactgaa
attggaactggccacatgtcacccgcttacttcttagagaagcaggaatc
atgagcaatatcaagaaataagaaaagacattcacatgcaaaattccagg
caaatatcttgtttactaagtaaggattctccagagaaatagtgcagagg
gtggggggttggggggg
gaattcatgtagggtccgtccccactgaatggctagtacatacactgagg
cttactctgtacaacccgttctgcttatataatgaaaggggtgagcagag
ggagtttgctagacatatttttcatctgctggggccttaattattcagtg
gttggttggctgtttagattatacaagctttcacttctgctctcttgccc
tactgctgactgtttcgttgtcacacaaatcattaacacatctgccaggg
gtactttggggacagaatgcagcagccgatctcagtgtccattatttccg
ctatttcttaccatgctcatgagaatcctgaatggcagggaagattgcag
tgctcaagtgtaaatcaactgtggaggatgctagcatccctatcacccag
gccctctcttgctcttcaaggacaagggaaacttgtcttcacattgcttt
aaaacaataaagagagtcacatgcatttaagaatgtattagatgctgctg
tattatcctgcaaagaaaaataatcctaccaattacttatcctataaagg
tttgtaaggttttctcccttttaaattttcctaagccttgatttctttgt
ttttctcaagaggataaggtaattttttttttctgtaactgctaatctgt
tgggtaatttatctttcagcttacttccatgaacacacagcatttccaat
ccaatatacaataaaacttactgtggggaatttctgggggaaagctgtat
gaaaaataattaaacaggaaaacctttgagatccatttttatatcaaaat
tttctttcagagtttgaaaaatcaagtaaagttggttcttttgttttgtt
ttgtttgtttgtttgtttgtttgttttgactacctcactcattctagaca
aatgtcttaggtgttattgctgtgacaaaacaccattaagccaaagcacc
ttgagaggaaagggtcgtgcatcttacagtttaccgagcatcatctggaa
aagtcaggaagaattaaagcagggactgaagtaaggggccaggaggaatg
ctgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_123227071_123227387
seq2: B6Ng01-020B22.b_48_364 (reverse)

seq1  CCCCCCCAACCCCCCACCCTCTGCACTATTTCTCTGGAGAATCCTTACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCAACCCCCCACCCTCTGCACTATTTCTCTGGAGAATCCTTACTT  50

seq1  AGTAAACAAGATATTTGCCTGGAATTTTGCATGTGAATGTCTTTTCTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAACAAGATATTTGCCTGGAATTTTGCATGTGAATGTCTTTTCTTAT  100

seq1  TTCTTGATATTGCTCATGATTCCTGCTTCTCTAAGAAGTAAGCGGGTGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGATATTGCTCATGATTCCTGCTTCTCTAAGAAGTAAGCGGGTGAC  150

seq1  ATGTGGCCAGTTCCAATTTCAGTGGCTAACTAATCTGTGTATTTGTTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGCCAGTTCCAATTTCAGTGGCTAACTAATCTGTGTATTTGTTAGG  200

seq1  GTAGCTGCAGGATTAGTGAAAGAAAGTGTTAGGAAACGTTAAACATATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTGCAGGATTAGTGAAAGAAAGTGTTAGGAAACGTTAAACATATCT  250

seq1  CTACTACATGAAAGAATAAATGCACGAATGCGACTCTACCACTTATGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTACATGAAAGAATAAATGCACGAATGCGACTCTACCACTTATGAGG  300

seq1  AATACTGAATATATAGT  317
      |||||||||||||||||
seq2  AATACTGAATATATAGT  317

seq1: chr3_123125477_123126547
seq2: B6Ng01-020B22.g_66_1120

seq1  GAATTCATGTAGGGTCCGTCCCCACTGAATGGCTAGTACATACACTGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTAGGGTCCGTCCCCACTGAATGGCTAGTACATACACTGAGG  50

seq1  CTTACTCTGTACAACCCGTTCTGCTTATATAATGAAAGGGGTGAGCAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTCTGTACAACCCGTTCTGCTTATATAATGAAAGGGGTGAGCAGAG  100

seq1  GGAGTTTGCTAGACATATTTTTCATCTGCTGGGGCCTTAATTATTCAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTTGCTAGACATATTTTTCATCTGCTGGGGCCTTAATTATTCAGTG  150

seq1  GTTGGTTGGCTGTTTAGATTATACAAGCTTTCACTTCTGCTCTCTTGCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTTGGCTGTTTAGATTATACAAGCTTTCACTTCTGCTCTCTTGCCC  200

seq1  TACTGCTGACTGTTTCGTTGTCACACAAATCATTAACACATCTGCCAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCTGACTGTTTCGTTGTCACACAAATCATTAACACATCTGCCAGGG  250

seq1  GTACTTTGGGGACAGAATGCAGCAGCCGATCTCAGTGTCCATTATTTCCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTTGGGGACAGAATGCAGCAGCCGATCTCAGTGTCCATTATTTCCG  300

seq1  CTATTTCTTACCATGCTCATGAGAATCCTGAATGGCAGGGAAGATTGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTCTTACCATGCTCATGAGAATCCTGAATGGCAGGGAAGATTGCAG  350

seq1  TGCTCAAGTGTAAATCAACTGTGGAGGATGCTAGCATCCCTATCACCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAAGTGTAAATCAACTGTGGAGGATGCTAGCATCCCTATCACCCAG  400

seq1  GCCCTCTCTTGCTCTTCAAGGACAAGGGAAACTTGTCTTCACATTGCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCTCTTGCTCTTCAAGGACAAGGGAAACTTGTCTTCACATTGCTTT  450

seq1  AAAACAATAAAGAGAGTCACATGCATTTAAGAATGTATTAGATGCTGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAATAAAGAGAGTCACATGCATTTAAGAATGTATTAGATGCTGCTG  500

seq1  TATTATCCTGCAAAGAAAAATAATCCTACCAATTACTTATCCTATAAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATCCTGCAAAGAAAAATAATCCTACCAATTACTTATCCTATAAAGG  550

seq1  TTTGTAAGGTTTTCTCCCTTTTAAATTTTCCTAAGCCTTGATTTCTTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAAGGTTTTCTCCCTTTTAAATTTTCCTAAGCCTTGATTTCTTTGT  600

seq1  TTTTCTCAAGAGGATAAGGTAATTTTTTTTTTCTGTAACTGCTAATCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCAAGAGGATAAGGTAATTTTTTTTTTCTGTAACTGCTAATCTGT  650

seq1  TGGGTAATTTATCTTTCAGCTTACTTCCATGAACACACAGCATTTCCAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAATTTATCTTTCAGCTTACTTCCATGAACACACAGCATTTCCAAT  700

seq1  CCAATATACAATAAAACTTACTGTGGGGAATTTCTGGGGGAAAGCTGTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATATACAATAAAACTTACTGTGGGGAATTTCTGGGGGAAAGCTGTAT  750

seq1  GAAAAATAATTAAACAGGAAAACCTTTGAGATCCA-TTTTATATCAAAAT  799
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GAAAAATAATTAAACAGGAAAACCTTTGAGATCCATTTTTATATCAAAAT  800

seq1  TTTCTTTCAGAGTTTGAAAAATCAAGTAAAGTTGGTTCTTTTGTTTTGTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCAGAGTTTGAAAAATCAAGTAAAGTTGGTTCTTTTGTTTTGTT  850

seq1  TTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTTGTACTACCTCACTCAT  899
      ||| |||||||   |||||||   ||||||||    ||||||||||||||
seq2  TTG-TTTGTTT--GTTTGTTT--GTTTGTTTT---GACTACCTCACTCAT  892

seq1  TCTAGACAAAATGTCTTAGGGTGTTTATTGCTGTGACAAAACACCATTAA  949
      ||||||| |||||||||| |||| ||||||||||||||||||||||||||
seq2  TCTAGAC-AAATGTCTTA-GGTG-TTATTGCTGTGACAAAACACCATTAA  939

seq1  GCCAAAGCAACTTGGAGAGGAAAGGGTTCGTTGCATCTTACAGTTTACAG  999
      ||||||||| ||| |||||||||||| ||| ||||||||||||||||| |
seq2  GCCAAAGCACCTT-GAGAGGAAAGGG-TCG-TGCATCTTACAGTTTACCG  986

seq1  AGCATCATCTGAAAAAGTCAGGACAGGAATTAAAGGCAGGAGCTGAAGT-  1048
      ||||||||||| ||||||||||  | |||||||| |||||  ||||||| 
seq2  AGCATCATCTGGAAAAGTCAGG--AAGAATTAAA-GCAGGGACTGAAGTA  1033

seq1  AGGGGTCATGAGGGAATGCTGCT  1071
      ||||| || || |||||||||||
seq2  AGGGGCCAGGA-GGAATGCTGCT  1055