BAC Information

Click to search

BAC

Clone NameB6Ng01-020F06
Chromosome3 (Build37)
Map Location 148,757,200 - 148,953,493
singlet/doubletdoublet
Overlap geneLOC668893
Upstream geneLOC100040354, Lphn2, LOC100040368
Downstream geneEG381483, LOC100040620, LOC100040633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020F06.bB6Ng01-020F06.g
ACCDH853159DH853160
length986914
definitionDH853159|Mus musculus domesticus DNA, BAC clone: B6Ng01-020F06, 5' end.DH853160|Mus musculus domesticus DNA, BAC clone: B6Ng01-020F06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,952,501 - 148,953,493)(148,757,200 - 148,758,117)
sequence
gaattcagagcctgggctcctttctgcactgtgtggatcttgtcagcata
ccttgtgatcctgttaacagtgacttacagcctctcagcgcctctcaact
cctttcccggttcctcttttatactccttcatccctcaaattacctccga
ccaactgttacctcccgagttttcagctgtccttcgatttcccatattta
actggctttgctatttcacaaccaacggaagtgtaaaaaagttagcattt
caaggttccccatgcaccacccgcccttgtccaaaaccctcagacaggca
ggcgctcttactttcttcaatcttcaagcaagggctgaggtgagatcctt
agtgattttgtatctcattagggagaactcctttgctgcctccttctcac
aggctaatggcttccctgtctgaaaacgttagcgttcttactccttccct
tgctcgttatagcgacctcatgactgtgtttcctaaggagatagatcgtg
cctctcgagctctctgtttctgaaagattcttcagtccccagctttccct
agccctagagatggcttcgtaaaggtttcccatcaatgagtgagtgttaa
aaagagttctcacagcagagagggctacaggaagggatcagcccaggatt
ctccaccattcctagaaatactgcatccagtaaaataaacatgtcctgtg
acatggttcactgagcaaacatggagacctgagttcagattcctaacacc
tatataaagagttaatcacatgactatcatcctgacacagagaagatcga
atccctggatcttggtagctgattagtcttactgaatcagtcaggtttat
gtctaatgataaatttgtctaaaaaaaataaataaataatttttaaaaag
tgagttataggaggatatcaactctggctttacacatatatctctctcca
cgacacatgtatactaaacatgtattcaacacacac
gaattctatgaactcgaccttaacatatagttttattttgtctttcacag
caagaaagctaagtcctacatgaaatcttacaaaccaagaaaaaaaaggt
gaaatttacatgtttttctgtatggaagagagattctcgggcaaatatat
taggtgaatttgttttgttaagagtgtgtgtacaaggccagcctggacta
caaagtattccaggatagccagggctacacagagaaaccctgtctcgaaa
aaacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaccacccccc
ccaccaccaacaacaacaacaaaaaaatgtttgtacaattaaaattcgaa
gcatagttaggattctgtcaatcttataaaaaccagttacataactctct
tactaaaaaaaatacagtggccactcactccgtaaaaccttgtgctttaa
gcttggatgccttcgaaggctacatgaagaacatggagcaaaaaccttta
aaccaagcactcaggaggcacaggcatgcagatctcggtgaatctggtct
gcaaacacagcctgcgccacactgtggtacctcgtctcgaaacttacata
gaaaccctaagattaccacatgccattgttacataagtttagactctttg
ggagaaaataaattcaagacagtatgtcttgtttagatttcttttttaat
tgagaagtagagatatttctctctttctctctcctctctctctctctctt
tctgtgtctgtctgtctctctgtctctgtttctgtctctgtctctctgtc
tccctctctgtatatggtgtggagtatatgaagatttgtatgtgcacatg
tggtatacatgccaggcatgcctttgggagatcagggacaagttatcaat
cagttccctcttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_148952501_148953493
seq2: B6Ng01-020F06.b_46_1031 (reverse)

seq1  GTGTGTGTTGAATACATGTTTAAGTATACATGTGTCTGTGTGAGAGAGAT  50
      ||||||||||||||||||||| |||||||||||||| ||| |||||||||
seq2  GTGTGTGTTGAATACATGTTT-AGTATACATGTGTC-GTG-GAGAGAGAT  47

seq1  ATATGTGTAAAGGCCAGGAGTTGATATCTTCCTATAACTCGACTTTTTTA  100
      ||||||||||| |||| ||||||||||| ||||||||||| || ||||||
seq2  ATATGTGTAAA-GCCA-GAGTTGATATCCTCCTATAACTC-AC-TTTTTA  93

seq1  AAAATTATTTATTTATTTTTTTTAGACAAATTTATCATTAGACATAAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTATTTATTTATTTTTTTTAGACAAATTTATCATTAGACATAAACC  143

seq1  TGACTGATTCAGTAAGACTAATCAGCTACCAAGATCCAGGGATTCGATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGATTCAGTAAGACTAATCAGCTACCAAGATCCAGGGATTCGATCT  193

seq1  TCTCTGTGTCAGGATGATAGTCATGTGATTAACTCTTTATATAGGTGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTGTCAGGATGATAGTCATGTGATTAACTCTTTATATAGGTGTTA  243

seq1  GGAATCTGAACTCAGGTCTCCATGTTTGCTCAGTGAACCATGTCACAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCTGAACTCAGGTCTCCATGTTTGCTCAGTGAACCATGTCACAGGA  293

seq1  CATGTTTATTTTACTGGATGCAGTATTTCTAGGAATGGTGGAGAATCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTATTTTACTGGATGCAGTATTTCTAGGAATGGTGGAGAATCCTG  343

seq1  GGCTGATCCCTTCCTGTAGCCCTCTCTGCTGTGAGAACTCTTTTTAACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGATCCCTTCCTGTAGCCCTCTCTGCTGTGAGAACTCTTTTTAACAC  393

seq1  TCACTCATTGATGGGAAACCTTTACGAAGCCATCTCTAGGGCTAGGGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCATTGATGGGAAACCTTTACGAAGCCATCTCTAGGGCTAGGGAAA  443

seq1  GCTGGGGACTGAAGAATCTTTCAGAAACAGAGAGCTCGAGAGGCACGATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGGACTGAAGAATCTTTCAGAAACAGAGAGCTCGAGAGGCACGATC  493

seq1  TATCTCCTTAGGAAACACAGTCATGAGGTCGCTATAACGAGCAAGGGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCCTTAGGAAACACAGTCATGAGGTCGCTATAACGAGCAAGGGAAG  543

seq1  GAGTAAGAACGCTAACGTTTTCAGACAGGGAAGCCATTAGCCTGTGAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAGAACGCTAACGTTTTCAGACAGGGAAGCCATTAGCCTGTGAGAA  593

seq1  GGAGGCAGCAAAGGAGTTCTCCCTAATGAGATACAAAATCACTAAGGATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAGCAAAGGAGTTCTCCCTAATGAGATACAAAATCACTAAGGATC  643

seq1  TCACCTCAGCCCTTGCTTGAAGATTGAAGAAAGTAAGAGCGCCTGCCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTCAGCCCTTGCTTGAAGATTGAAGAAAGTAAGAGCGCCTGCCTGT  693

seq1  CTGAGGGTTTTGGACAAGGGCGGGTGGTGCATGGGGAACCTTGAAATGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGGTTTTGGACAAGGGCGGGTGGTGCATGGGGAACCTTGAAATGCT  743

seq1  AACTTTTTTACACTTCCGTTGGTTGTGAAATAGCAAAGCCAGTTAAATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTTTACACTTCCGTTGGTTGTGAAATAGCAAAGCCAGTTAAATAT  793

seq1  GGGAAATCGAAGGACAGCTGAAAACTCGGGAGGTAACAGTTGGTCGGAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATCGAAGGACAGCTGAAAACTCGGGAGGTAACAGTTGGTCGGAGG  843

seq1  TAATTTGAGGGATGAAGGAGTATAAAAGAGGAACCGGGAAAGGAGTTGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGAGGGATGAAGGAGTATAAAAGAGGAACCGGGAAAGGAGTTGAG  893

seq1  AGGCGCTGAGAGGCTGTAAGTCACTGTTAACAGGATCACAAGGTATGCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGCTGAGAGGCTGTAAGTCACTGTTAACAGGATCACAAGGTATGCTG  943

seq1  ACAAGATCCACACAGTGCAGAAAGGAGCCCAGGCTCTGAATTC  993
      |||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGATCCACACAGTGCAGAAAGGAGCCCAGGCTCTGAATTC  986

seq1: chr3_148757200_148758117
seq2: B6Ng01-020F06.g_66_979

seq1  GAATTCTATGAACTCGACCTTAACATATAGTTTTATTTTGTCTTTCACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGAACTCGACCTTAACATATAGTTTTATTTTGTCTTTCACAG  50

seq1  CAAGAAAGCTAAGTCCTACATGAAATCTTACAAACCAAGAAAAAAAAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAGCTAAGTCCTACATGAAATCTTACAAACCAAGAAAAAAAAGGT  100

seq1  GAAATTTACATGTTTTTCTGTATGGAAGAGAGATTCTCGGGCAAATATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTACATGTTTTTCTGTATGGAAGAGAGATTCTCGGGCAAATATAT  150

seq1  TAGGTGAATTTGTTTTGTTAAGAGTGTGTGTACAAGGCCAGCCTGGACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGAATTTGTTTTGTTAAGAGTGTGTGTACAAGGCCAGCCTGGACTA  200

seq1  CAAAGTATTCCAGGATAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTATTCCAGGATAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAA  250

seq1  AAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAACCCCA  300
      ||||||||||||||||||||||||||||||||||||||||| || |||| 
seq2  AAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCACCCCCC  300

seq1  CCACCACCAACAACAACAACAAAAGAATGTTTGTACAATTAAAATTCGAA  350
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CCACCACCAACAACAACAACAAAAAAATGTTTGTACAATTAAAATTCGAA  350

seq1  GCATAGTTAGGATTCTGTCAATCTTATAAAAACCAGTTACATAACTCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGTTAGGATTCTGTCAATCTTATAAAAACCAGTTACATAACTCTCT  400

seq1  TACTAAAAGAAATACAGTGGCCACTCACTCCGTAGAACCTTGTGCTTTAA  450
      |||||||| ||||||||||||||||||||||||| |||||||||||||||
seq2  TACTAAAAAAAATACAGTGGCCACTCACTCCGTAAAACCTTGTGCTTTAA  450

seq1  GCTTGGATGCCTTCGAAGGCTACATGAAGAACATGGAGCAGAAACCTTTA  500
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GCTTGGATGCCTTCGAAGGCTACATGAAGAACATGGAGCAAAAACCTTTA  500

seq1  AACCAAGCACTCAGGAGGCACAGGCATGCAGATCTCGGTGAATCTGGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAGCACTCAGGAGGCACAGGCATGCAGATCTCGGTGAATCTGGTCT  550

seq1  GCAAACACAGCCTGCGCCACACTGTGGTACCTCGTCTCGAAACTTACATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACACAGCCTGCGCCACACTGTGGTACCTCGTCTCGAAACTTACATA  600

seq1  GAAACCCTAAGATTACCACATGCCATTGTTACATAAGTTTAGACTCTTT-  649
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GAAACCCTAAGATTACCACATGCCATTGTTACATAAGTTTAGACTCTTTG  650

seq1  GGAGAAAATAAATTCAAGACAGTATGTCTTGTTTAGATTTCTTTTTTAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAATAAATTCAAGACAGTATGTCTTGTTTAGATTTCTTTTTTAAT  700

seq1  TGAGAAGTAGAGATATTTCTCTCTTTCTCTCTCCTCTCTCTCTCTCTCTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGTAGAGATATTTCTCTCTTTCTCTCTCCTCTCTCTCTCTCTCTT  750

seq1  TCTGTGTCTGTCTGTCTCTCTGTCTCTGTTTCTGTCTCTGTCTCTCTGTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTCTGTCTGTCTCTCTGTCTCTGTTTCTGTCTCTGTCTCTCTGTC  800

seq1  TCCCTCTCTGTATATGTGTGT-GAGTATATGAGAGTATGTATGTGCACAT  848
      |||||||||||||||| |||| ||||||||||   | |||||||||||||
seq2  TCCCTCTCTGTATATG-GTGTGGAGTATATGAAGATTTGTATGTGCACAT  849

seq1  GTGGTTATACATGCCAAGGCATGCCTTT-GGAGATCAGGGGACAATGTTA  897
      |||| |||||||||| |||||||||||| |||||||| ||||||| ||||
seq2  GTGG-TATACATGCC-AGGCATGCCTTTGGGAGATCA-GGGACAA-GTTA  895

seq1  TCAAATCAGTTCCCTCCTTCA  918
      || |||||||||||| |||||
seq2  TC-AATCAGTTCCCT-CTTCA  914