BAC Information

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BAC

Clone NameB6Ng01-020F14
Chromosome3 (Build37)
Map Location 125,543,235 - 125,694,215
singlet/doubletdoublet
Overlap geneUgt8a
Upstream geneLOC668820, Ndst4
Downstream geneArsj, Camk2d, Ank2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020F14.bB6Ng01-020F14.g
ACCDH853173DH853174
length1,037368
definitionDH853173|Mus musculus domesticus DNA, BAC clone: B6Ng01-020F14, 5' end.DH853174|Mus musculus domesticus DNA, BAC clone: B6Ng01-020F14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,543,235 - 125,544,283)(125,693,842 - 125,694,215)
sequence
gaattctttgttctatactttccatctccaggtttgtacttatatttgct
gccttatatttggaattccaaaagcttggctccagatcctgtggcagtgt
agtgcaactgcaaaaatgccaattagtggaaacagcatgctctgttctct
gttcataggcaacagcctgcctgggccagtctttctcttgccttttccat
ttgcctaacatttgtcctcttccactagccaacttgcataaaatttattg
cttagaaattaccaaatgatatttatattatattatatccaaagcaatta
actaatggtttcacatttaaagttttttgtttggttgttttgtacaaaca
aattatacaagtcattttggggacagttgtccaagtttgagaatcctgtg
agtactcattgacaaaaagggatgatagtttttagatgtagcaatgttat
tttcagggtatatgtactcatttgtgtgaacatgcacactagaagtacta
tgaaatgagatgtaatgttggtaatttatttcacaatagttcagcaaata
aaaaagaagtaataaaataaaatataaagctgtcagttctcagaatagaa
ttcatctttttaataaactccaatattggcatatattattttagtaatag
agtagtcactgctaaataggtagatgctgattgtgggccaaacactctgc
tatgtgtctcatctgtattagatcacttaactatatgataaaatgatttg
ctaggttaaaactgttaaaggatttcaggaaaaagaaacaatgcatttag
tttttacctgtggtaggccactactttatatgagggttcaaaagtcccaa
agaaggaaaatggatatatgaatgaaaattaaataatggagatcataaag
aaatttagctactgagaactaacatagatccatgtgatcctggttaacac
tcaaaatatctaaaataacaaactttaaagtagtctattagtgcttcaca
aagaaacaaagacacagttacagaagtcacagctgtt
accatgtaatatgctggtcatttaagacatttttttccattgatagaaaa
atcccagttacttacagaaagaagtgaactggtatgaacatgagcccagg
tcatcttcttcctattggagtgaatgaggtacagatggtaaggtataggt
ttggtatatttttttttttggactcacttggaagaaactttagaaggtac
cagcctatgcttcctttttctctaaaatttaacatatgcaacttcataac
tggcttatttttcaatctttattgtgtgcacaggcacacaagcaagttgg
tatgggtattgtggaggctagaagcgggcatcagatcctgtggagctgga
attaaaggcaggtttgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_125543235_125544283
seq2: B6Ng01-020F14.b_45_1081

seq1  GAATTCTTTGTTCTATACTTTCCATCTCCAGGTTTGTACTTATATTTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTCTATACTTTCCATCTCCAGGTTTGTACTTATATTTGCT  50

seq1  GCCTTATATTTGGAATTCCAAAAGCTTGGCTCCAGATCCTGTGGCAGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTATATTTGGAATTCCAAAAGCTTGGCTCCAGATCCTGTGGCAGTGT  100

seq1  AGTGCAACTGCAAAAATGCCAATTAGTGGAAACAGCATGCTCTGTTCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAACTGCAAAAATGCCAATTAGTGGAAACAGCATGCTCTGTTCTCT  150

seq1  GTTCATAGGCAACAGCCTGCCTGGGCCAGTCTTTCTCTTGCCTTTTCCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATAGGCAACAGCCTGCCTGGGCCAGTCTTTCTCTTGCCTTTTCCAT  200

seq1  TTGCCTAACATTTGTCCTCTTCCACTAGCCAACTTGCATAAAATTTATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTAACATTTGTCCTCTTCCACTAGCCAACTTGCATAAAATTTATTG  250

seq1  CTTAGAAATTACCAAATGATATTTATATTATATTATATCCAAAGCAATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAAATTACCAAATGATATTTATATTATATTATATCCAAAGCAATTA  300

seq1  ACTAATGGTTTCACATTTAAAGTTTTTTGTTTGGTTGTTTTGTACAAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATGGTTTCACATTTAAAGTTTTTTGTTTGGTTGTTTTGTACAAACA  350

seq1  AATTATACAAGTCATTTTGGGGACAGTTGTCCAAGTTTGAGAATCCTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATACAAGTCATTTTGGGGACAGTTGTCCAAGTTTGAGAATCCTGTG  400

seq1  AGTACTCATTGACAAAAAGGGATGATAGTTTTTAGATGTAGCAATGTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTCATTGACAAAAAGGGATGATAGTTTTTAGATGTAGCAATGTTAT  450

seq1  TTTCAGGGTATATGTACTCATTTGTGTGAACATGCACACTAGAAGTACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGGTATATGTACTCATTTGTGTGAACATGCACACTAGAAGTACTA  500

seq1  TGAAATGAGATGTAATGTTGGTAATTTATTTCACAATAGTTCAGCAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGAGATGTAATGTTGGTAATTTATTTCACAATAGTTCAGCAAATA  550

seq1  AAAAAGAAGTAATAAAATAAAATATAAAGCTGTCAGTTCTCAGAATAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAGTAATAAAATAAAATATAAAGCTGTCAGTTCTCAGAATAGAA  600

seq1  TTCATCTTTTTAATAAACTCCAATATTGGCATATATTATTTTAGTAATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTTTTTAATAAACTCCAATATTGGCATATATTATTTTAGTAATAG  650

seq1  AGTAGTCACTGCTAAATAGGTAGATGCTGATTGTGGGCCAAACACTCTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTCACTGCTAAATAGGTAGATGCTGATTGTGGGCCAAACACTCTGC  700

seq1  TATGTGTCTCATCTGTATTAGATCACTTAACTATATGATAAAATGATTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTCTCATCTGTATTAGATCACTTAACTATATGATAAAATGATTTG  750

seq1  CTAGGTTAAAACTGTTAAAGGATTTCAGGAAAAAGAAACAATGCATTTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTTAAAACTGTTAAAGGATTTCAGGAAAAAGAAACAATGCATTTAG  800

seq1  TTTTTACCTGTGGTAGGCCACTACTTAATATGAGGGTTCAAAAGTCCCAA  850
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTTTTACCTGTGGTAGGCCACTACTTTATATGAGGGTTCAAAAGTCCCAA  850

seq1  AGAAGGAAAATGGATATATGAATGAAAATTAAAATAATGGAGATCAATAA  900
      |||||||||||||||||||||||||||||| |||||||||||||| ||||
seq2  AGAAGGAAAATGGATATATGAATGAAAATT-AAATAATGGAGATC-ATAA  898

seq1  AGAAAATTTAGCTACTGAGAACTAACATAGATCCATTGTGATCCCTGGTT  950
      || |||||||||||||||||||||||||||||||| |||||| |||||||
seq2  AG-AAATTTAGCTACTGAGAACTAACATAGATCCA-TGTGAT-CCTGGTT  945

seq1  AACACTCAAAAATATCTAAAAATAAACAAACTTTAAAGTAGTCCTATTAG  1000
      ||||||| |||||||||||||   |||||||||||||||||| |||||||
seq2  AACACTC-AAAATATCTAAAA--TAACAAACTTTAAAGTAGT-CTATTAG  991

seq1  TTGCTTCACAAAGAAACAAAAGACACCAGTTACAGAAGTCACAGCTGTT  1049
       |||||||||||||||| ||||||| |||||||||||||||||||||||
seq2  -TGCTTCACAAAGAAAC-AAAGACA-CAGTTACAGAAGTCACAGCTGTT  1037

seq1: chr3_125693842_125694215
seq2: B6Ng01-020F14.g_66_439 (reverse)

seq1  CTCAAACCTGCCTTTAATTCCAGCTCCACAGGATCTGATGCCCGCTTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAACCTGCCTTTAATTCCAGCTCCACAGGATCTGATGCCCGCTTCTA  50

seq1  GCCTCCACAATACCCATACCAACTTGCTTGTGTGCCTGTGCACACAATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCACAATACCCATACCAACTTGCTTGTGTGCCTGTGCACACAATAA  100

seq1  AGATTGAAAAATAAGCCAGTTATGAAGTTGCATATGTTAAATTTTAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGAAAAATAAGCCAGTTATGAAGTTGCATATGTTAAATTTTAGAGA  150

seq1  AAAAGGAAGCATAGGCTGGTACCTTCTAAAGTTTCTTCCAAGTGAGTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAAGCATAGGCTGGTACCTTCTAAAGTTTCTTCCAAGTGAGTCCA  200

seq1  AAAAAAAAAATATACCAAACCTATACCTTACCATCTGTACCTCATTCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAATATACCAAACCTATACCTTACCATCTGTACCTCATTCACT  250

seq1  CCAATAGGAAGAAGATGACCTGGGCTCATGTTCATACCAGTTCACTTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAGGAAGAAGATGACCTGGGCTCATGTTCATACCAGTTCACTTCTT  300

seq1  TCTGTAAGTAACTGGGATTTTTCTATCAATGGAAAAAAATGTCTTAAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAAGTAACTGGGATTTTTCTATCAATGGAAAAAAATGTCTTAAATG  350

seq1  ACCAGCATATTACATGGTGAATTC  374
      ||||||||||||||||||||||||
seq2  ACCAGCATATTACATGGTGAATTC  374