BAC Information

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BAC

Clone NameB6Ng01-020G11
Chromosome3 (Build37)
Map Location 68,272,823 - 68,406,042
singlet/doubletdoublet
Overlap geneSchip1
Upstream geneGfm1, Rarres1, Mfsd1, LOC667207, Gm412, EG208426, EG545531, LOC631379
Downstream geneIl12a, LOC639530, 1110032F04Rik, Ift80, Smc4, Trim59, LOC667272, Kpna4, Arl14, Ppm1l, LOC667309, B3galnt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020G11.bB6Ng01-020G11.g
ACCDH853210DH853211
length1,062981
definitionDH853210|Mus musculus domesticus DNA, BAC clone: B6Ng01-020G11, 5' end.DH853211|Mus musculus domesticus DNA, BAC clone: B6Ng01-020G11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,272,823 - 68,273,896)(68,405,331 - 68,406,042)
sequence
gaattctgtccttcaccagcctaggcaggaagacttaggtgctcttaagc
tgattgtacctccatcattcactaactaactctgcttccagatgttgtag
cctcttaagtaaccaatctgaaatcaactaacagaacttttgaaggtcta
aatacttgctagcacagggcatctaggaaaggctaagatacattcttttg
gaagtgggattttattgattgcctaaggagaagtgggtgtggcagaagga
aaaaaaaaaaaaccttaagggtcattttatctcctgtcccaagcctttta
accaagctcattcatcagctgtggccgaaagtgaagtccgcccaggaatt
taaaagagcgatggtgtgttgcagggtgtggggtcgccttctctctttgc
taagtcaggggctattcatcttctgaggccagccggttttggtgcagtag
ctggtggtggaaaggtttaaaattggattaaaattccttacacattctat
gccttgtaaaaaaatattcatatatctgggtagtcactgaagaatttatt
agctaatttattgactaatgagtgccctatgcacttgttagtgcttcctc
aagactccttgaaaagattttgtttttaagcaactgggctttttccattc
aaggttttccatttccattcaagggcttctcacttgcctggctgttcatg
tgtgggcaaagtctgactctgacttgctacccgaaaaccataaaggactc
tcttgagcctgacctaccaccacaaatgctactgtccaggcataaagttc
atagtcacaacataggcagtatctgagcttatgggactagctctgttcat
tttgcatcaagctaatatagaaagaagagtccaaaagactgcttgcagcc
tgatggtttgaatttgaccctggatcccacaagtgcaggagagactggct
cctagattgtccctgacttccagggcacatagcataatagcatctgcaca
cacacatacatatgccaccacatatgcatgcatacatgtgtattgctgct
ttcatggtgcac
gaattccagtgaaggactgactgccccagtttggttagttccatcgtgga
gatcccgactcatttgttcaaccatacttggagagttgacctcatgtcat
gtggttgccttggtaacaaacacaccaaagacttgcttcccaataactta
catttgggtgctggctaaagacaaagaacagatttatagacattctgtaa
atgtcttaataagggtaatgggtctaaagagaaccatgtcgaggtaagtg
gataaactggataaaagagaaagtgacggggtgtgcgtgtttatctataa
taaagcagcctgggaaggtctctctgaggagatgatatatgtcaaaacaa
cctagcccacaacagaagacaataaaatagcctttattatccagtactta
attattatcagatggaaagcaaaagaaaaaacaacaaaaaaaaacatggg
aaatatgaagctcagtaaaaactatcttaaacaatcaaactaaaacttat
atactaacaattctgaaagtgtaaagaaaatggagaaataccttgaaaaa
tacatctcattagaattgactcaagaaagatccaaaaagtaggtacgatc
agacagctcttaaggaatggaagcagcttggaaacagatgcataaatacc
agaccactattgtaggtgacttcacagaagcgaatcattacagcggatat
agacatttgggggataatatgaaatataagtccttgcccatttttaagcc
agcatcattctaaaagtagacaaaatattctaagactatgaaagatccat
gtcaattatgaatacacatgtaacaatcttaagcaagatattaaaagtaa
aggatataaaaagataatttacctcaacctgcttggcttataggctatgc
aaggatgattcaactttttgcaatctctaatgtactgcactgattcatta
atggaacagatacgtgacaaagttattttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_68272823_68273896
seq2: B6Ng01-020G11.b_43_1104

seq1  GAATTCTGTCCTTCACCAGCCTAGGCAGGAAGACTTAGGTGCTCTTAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCCTTCACCAGCCTAGGCAGGAAGACTTAGGTGCTCTTAAGC  50

seq1  TGATTGTACCTCCATCATTCACTAACTAACTCTGCTTCCAGATGTTGTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGTACCTCCATCATTCACTAACTAACTCTGCTTCCAGATGTTGTAG  100

seq1  CCTCTTAAGTAACCAATCTGAAATCAACTAACAGAACTTTTGAAGGTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTAAGTAACCAATCTGAAATCAACTAACAGAACTTTTGAAGGTCTA  150

seq1  AATACTTGCTAGCACAGGGCATCTAGGAAAGGCTAAGATACATTCTTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTTGCTAGCACAGGGCATCTAGGAAAGGCTAAGATACATTCTTTTG  200

seq1  GAAGTGGGATTTTATTGATTGCCTAAGGAGAAGTGGGTGTGGCAGAAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGGGATTTTATTGATTGCCTAAGGAGAAGTGGGTGTGGCAGAAGGA  250

seq1  AAAAAAAAAAAACCTTAAGGGTCATTTTATCTCCTGTCCCAAGCCTTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAACCTTAAGGGTCATTTTATCTCCTGTCCCAAGCCTTTTA  300

seq1  ACCAAGCTCATTCATCAGCTGTGGCCGAAAGTGAAGTCCGCCCAGGAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGCTCATTCATCAGCTGTGGCCGAAAGTGAAGTCCGCCCAGGAATT  350

seq1  TAAAAGAGCGATGGTGTGTTGCAGGGTGTGGGGTCGCCTTCTCTCTTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAGCGATGGTGTGTTGCAGGGTGTGGGGTCGCCTTCTCTCTTTGC  400

seq1  TAAGTCAGGGGCTATTCATCTTCTGAGGCCAGCCGGTTTTGGTGCAGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCAGGGGCTATTCATCTTCTGAGGCCAGCCGGTTTTGGTGCAGTAG  450

seq1  CTGGTGGTGGAAAGGTTTAAAATTGGATTAAAATTCCTTACACATTCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGGTGGAAAGGTTTAAAATTGGATTAAAATTCCTTACACATTCTAT  500

seq1  GCCTTGTAAAAAAATATTCATATATCTGGGTAGTCACTGAAGAATTTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGTAAAAAAATATTCATATATCTGGGTAGTCACTGAAGAATTTATT  550

seq1  AGCTAATTTATTGACTAATGAGTGCCCTATGCACTTGTTAGTGCTTCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAATTTATTGACTAATGAGTGCCCTATGCACTTGTTAGTGCTTCCTC  600

seq1  AAGACTCCTTGAAAAGATTTTGTTTTTAAGCAACTGGGCTTTTTCCATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTCCTTGAAAAGATTTTGTTTTTAAGCAACTGGGCTTTTTCCATTC  650

seq1  AAGGTTTTCCATTTCCATTCAAGGGCTTCTCACTTGCCTGGCTGTTCATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTTCCATTTCCATTCAAGGGCTTCTCACTTGCCTGGCTGTTCATG  700

seq1  TGTGGGCAAAGTCTGACTCTGACTTGCTACCCGAAAACCATAAAGGACTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGCAAAGTCTGACTCTGACTTGCTACCCGAAAACCATAAAGGACTC  750

seq1  TCTTGAGCCTGACCTACCACCACAAATGCTACTGTCCAGGCATAAAGTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAGCCTGACCTACCACCACAAATGCTACTGTCCAGGCATAAAGTTC  800

seq1  ATAGTCACAACATAGGCAGTATCTGAGCTTATGGGACTAGCTCTGTTCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCACAACATAGGCAGTATCTGAGCTTATGGGACTAGCTCTGTTCAT  850

seq1  TTTGCATCAAGCTAATATAGAAAGAAGAGTCCAAAAGACTGCTTGCAGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTTGCATCAAGCTAATATAGAAAGAAGAGTCCAAAAGACTGCTTGCA-GC  899

seq1  CTGATGGTTTGAATTTGACCCTGGATCCCACAAGGTGGCAGGAGAGAACT  950
      ||||||||||||||||||||||||||||||||||   ||||||||| |||
seq2  CTGATGGTTTGAATTTGACCCTGGATCCCACAAG--TGCAGGAGAG-ACT  946

seq1  GGCTCCTAAGGATTGTCCCCTGACTTCCAAGGGCACCATAGCATAATAGC  1000
      ||||||||  |||||| ||||||||||| |||||| ||||||||||||||
seq2  GGCTCCTA--GATTGT-CCCTGACTTCC-AGGGCA-CATAGCATAATAGC  991

seq1  ATCTGCACACACACATACATATGCACACACACATATGCATGCATACATGT  1050
      |||||||||||||||||||||||| ||| |||||||||||||||||||||
seq2  ATCTGCACACACACATACATATGC-CAC-CACATATGCATGCATACATGT  1039

seq1  GTATATGCTGCTTTCAATGTGCAC  1074
      |||| |||||||||||  ||||||
seq2  GTAT-TGCTGCTTTCATGGTGCAC  1062

seq1: chr3_68405331_68406042
seq2: B6Ng01-020G11.g_66_777 (reverse)

seq1  CCCCAAATGTCTATATCCGCTGTAATGATTCGCTTCTGTGAAGTCACCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAATGTCTATATCCGCTGTAATGATTCGCTTCTGTGAAGTCACCTA  50

seq1  CAATAGTGGTCTGGTATTTATGCATCTGTTTCCAAGCTGCTTCCATTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGTGGTCTGGTATTTATGCATCTGTTTCCAAGCTGCTTCCATTCCT  100

seq1  TAAGAGCTGTCTGATCGTACCTACTTTTTGGATCTTTCTTGAGTCAATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGCTGTCTGATCGTACCTACTTTTTGGATCTTTCTTGAGTCAATTC  150

seq1  TAATGAGATGTATTTTTCAAGGTATTTCTCCATTTTCTTTACACTTTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAGATGTATTTTTCAAGGTATTTCTCCATTTTCTTTACACTTTCAG  200

seq1  AATTGTTAGTATATAAGTTTTAGTTTGATTGTTTAAGATAGTTTTTACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTAGTATATAAGTTTTAGTTTGATTGTTTAAGATAGTTTTTACTG  250

seq1  AGCTTCATATTTCCCATGTTTTTTTTTGTTGTTTTTTCTTTTGCTTTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCATATTTCCCATGTTTTTTTTTGTTGTTTTTTCTTTTGCTTTCCA  300

seq1  TCTGATAATAATTAAGTACTGGATAATAAAGGCTATTTTATTGTCTTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATAATAATTAAGTACTGGATAATAAAGGCTATTTTATTGTCTTCTG  350

seq1  TTGTGGGCTAGGTTGTTTTGACATATATCATCTCCTCAGAGAGACCTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGGCTAGGTTGTTTTGACATATATCATCTCCTCAGAGAGACCTTCC  400

seq1  CAGGCTGCTTTATTATAGATAAACACGCACACCCCGTCACTTTCTCTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGCTTTATTATAGATAAACACGCACACCCCGTCACTTTCTCTTTT  450

seq1  ATCCAGTTTATCCACTTACCTCGACATGGTTCTCTTTAGACCCATTACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGTTTATCCACTTACCTCGACATGGTTCTCTTTAGACCCATTACCC  500

seq1  TTATTAAGACATTTACAGAATGTCTATAAATCTGTTCTTTGTCTTTAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAAGACATTTACAGAATGTCTATAAATCTGTTCTTTGTCTTTAGCC  550

seq1  AGCACCCAAATGTAAGTTATTGGGAAGCAAGTCTTTGGTGTGTTTGTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCCAAATGTAAGTTATTGGGAAGCAAGTCTTTGGTGTGTTTGTTAC  600

seq1  CAAGGCAACCACATGACATGAGGTCAACTCTCCAAGTATGGTTGAACAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCAACCACATGACATGAGGTCAACTCTCCAAGTATGGTTGAACAAA  650

seq1  TGAGTCGGGATCTCCACGATGGAACTAACCAAACTGGGGCAGTCAGTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCGGGATCTCCACGATGGAACTAACCAAACTGGGGCAGTCAGTCCT  700

seq1  TCACTGGAATTC  712
      ||||||||||||
seq2  TCACTGGAATTC  712