BAC Information

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BAC

Clone NameB6Ng01-020J07
Chromosome3 (Build37)3 (Build37)
Map Location 41,059,224 - 41,059,73711,867,535 - 11,868,662
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020J07.bB6Ng01-020J07.g
ACCDH853341DH853342
length8871,107
definitionDH853341|Mus musculus domesticus DNA, BAC clone: B6Ng01-020J07, 5' end.DH853342|Mus musculus domesticus DNA, BAC clone: B6Ng01-020J07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,224 - 41,059,737)(11,867,535 - 11,868,662)
sequence
gaattctttgtttatctctgagccccatttttaatggggttatttgattt
tctggagtccaccttcttgagttctttatatatattggatattagtcccc
tatgtgatttaggataggtaaagatcctttcccaatctgttggtggtctt
tttgtcttattgactgtgtcttatgccttacagaatctttgcaattttat
gaagtcccatttgttgattcttgatcttacagcacaagccattgctgttc
tattcagaaaaatttcccctgtacccataacttcgagacttttccccact
ttctcctctataagtttcactgtctctggatttatgtggagttccttgat
ccaccttagatttgaccttagtacaagaaaataggaatggatcaactcac
attcttcgacatgataacctccagttgtgccagcaccatttattgaaaag
gctgtcttttttcgactggatgtttttaggtcctttgtcaaagatcaagt
gaccataggtgtgtgggttcatttttgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
actgtagtacagctttaggttaggcatcgtgattccaccagagattcttt
atccttgagaagagtttttgctatcctaggatttttgtttttttccagat
gaatttgcagattgccctttctaatttgttgaagaattgagttggaattt
tgatggggattgcattgaatctgtagattgcttttggcaagatagccatt
tttactatattgatcctgctaatccatgagcatgggagatctttccatct
tctgagatcttctctaatttctttcttcagagataga
gaattctttgcttaggtctgtaccccagtttttaatggagttatttgaat
tttttgagttcagcttcttgagctctttgtacatatattggatattagtc
ccctatctcacataatcctgcattcactaacacatgaataacaaaaaact
gagtttcttcatgcattttttttatcacttagaactgttaatatgttcca
aagacaaagatatttctgggaattcattcacaaattcatcctgccttgaa
aaaagatacaatattaaaatatactaactcctgcaatttaaatgtatatg
tcatgtcttttccatttctctttattttacaagtgagccatttctgtaag
tcatttcgcacagtgatatattggagatagaaacactcaaaagaattagt
gaagaaataatatggctgaatatctaccaagtgtttgtgttagtcttttc
acaaatgtgagcaatagataattggaacactagtttttaaatattgtgat
tttcaagaaaacatagctaaatttggtgtccctaaatttgacccaggtag
ttcatttgtaatttttaattgggtattttcttcatttacatttccaatgc
tatcccaaaagtcccccataccccgccccactccccctccccaactccca
cttcttagccctggcgttcctctgtactgaggcatataaagtttgcaaga
ccaatgggcctctctttccagtgatggccgactaggccatcttctgatac
atatgcagctagagacacgagctctggggatactggttagttcatattgt
tgttccacctatagggttgcagaccccttttgattttattgatcatataa
tttgattatactctaaaacacttttcaatagcattcattctttaaccttt
aaattctttacttatatgttttgcatcaatgtcctgtataatatcagaga
tgtgataaattttggtttcagaaatcacactcatggtctttgtcagatat
ttaagatacagtgctaagagaaaccacgaatctaggagatatgctggtct
gtcagtggcagaataatctagtcaaggtccatgacgtaataattggggaa
gctggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059224_41059737
seq2: B6Ng01-020J07.b_46_560 (reverse)

seq1  CCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCA  50
      |||||||||||||||||||||||||| ||||| ||| |||||| ||||||
seq2  CCACACACCTATGGTCACTTGATCTTTGACAAAGGACCTAAAAACATCCA  50

seq1  GTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTTGT  100
      || ||||||||||||| ||||||| |||||||||||||||||||||  ||
seq2  GTCGAAAAAAGACAGCCTTTTCAATAAATGGTGCTGGCACAACTGGAGGT  100

seq1  TATCATGTAGAAGAATGCGAATTGATCCACTCCTATCTCCTTGTACTAAG  150
      |||||||| |||||||| || |||||||| |||||| | |||||||||||
seq2  TATCATGTCGAAGAATGTGAGTTGATCCATTCCTATTTTCTTGTACTAAG  150

seq1  GTCAAATCTAA-GTGGATCAAGGAACGCCACATAAAACCAGAGACACTGA  199
      ||||||||||| |||||||||||||| ||||||||| ||||||||| |||
seq2  GTCAAATCTAAGGTGGATCAAGGAACTCCACATAAATCCAGAGACAGTGA  200

seq1  AACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGGG  249
      |||||||||||||||||||||||||||| || |||| |||||  ||||||
seq2  AACTTATAGAGGAGAAAGTGGGGAAAAGTCTCGAAGTTATGGGTACAGGG  250

seq1  GAAAAATTCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAAT  299
      ||||  || ||| ||||||||||||||||||||||||||||||  |||||
seq2  GAAATTTTTCTGAATAGAACAGCAATGGCTTGTGCTGTAAGATCAAGAAT  300

seq1  AGACAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACA  349
        ||||||||||| |||| ||| ||||||| ||||| |||||| ||||||
seq2  CAACAAATGGGACTTCATAAAATTGCAAAGATTCTGTAAGGCATAAGACA  350

seq1  CCGTCAATAAGACAAAAAG-GCACCAACAGATTGGGAAAGGATCTTTACC  398
      | |||||||||||||||||  |||||||||||||||||||||||||||||
seq2  CAGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTACC  400

seq1  TATCCTAAATCAGATAGGGGACTAATATCCAATATATATCAAGAACTCAA  448
      |||||||||||| |||||||||||||||||||||||||| ||||||||||
seq2  TATCCTAAATCACATAGGGGACTAATATCCAATATATATAAAGAACTCAA  450

seq1  GAAGGTGGATTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAG  498
      ||||||||| |||||||||||||||||||||||| |||||||||||||||
seq2  GAAGGTGGACTCCAGAAAATCAAATAACCCCATT-AAAAATGGGGCTCAG  499

seq1  AGCTAAACAAAGAATT  514
      || |||||||||||||
seq2  AGATAAACAAAGAATT  515

seq1: chr3_11867535_11868662
seq2: B6Ng01-020J07.g_68_1174

seq1  GAATTCTTTGCTTAGGTCTGTACCCCAGTTTTTAATGGAGTTATTTGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGCTTAGGTCTGTACCCCAGTTTTTAATGGAGTTATTTGAAT  50

seq1  TTTTTGAGTTCAGCTTCTTGAGCTCTTTGTACATATATTGGATATTAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGAGTTCAGCTTCTTGAGCTCTTTGTACATATATTGGATATTAGTC  100

seq1  CCCTATCTCACATAATCCTGCATTCACTAACACATGAATAACAAAAAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATCTCACATAATCCTGCATTCACTAACACATGAATAACAAAAAACT  150

seq1  GAGTTTCTTCATGCATTTTTTTTATCACTTAGAACTGTTAATATGTTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTCTTCATGCATTTTTTTTATCACTTAGAACTGTTAATATGTTCCA  200

seq1  AAGACAAAGATATTTCTGGGAATTCATTCACAAATTCATCCTGCCTTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAAAGATATTTCTGGGAATTCATTCACAAATTCATCCTGCCTTGAA  250

seq1  AAAAGATACAATATTAAAATATACTAACTCCTGCAATTTAAATGTATATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATACAATATTAAAATATACTAACTCCTGCAATTTAAATGTATATG  300

seq1  TCATGTCTTTTCCATTTCTCTTTATTTTACAAGTGAGCCATTTCTGTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTCTTTTCCATTTCTCTTTATTTTACAAGTGAGCCATTTCTGTAAG  350

seq1  TCATTTCGCACAGTGATATATTGGAGATAGAAACACTCAAAAGAATTAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCGCACAGTGATATATTGGAGATAGAAACACTCAAAAGAATTAGT  400

seq1  GAAGAAATAATATGGCTGAATATCTACCAAGTGTTTGTGTTAGTCTTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAATAATATGGCTGAATATCTACCAAGTGTTTGTGTTAGTCTTTTC  450

seq1  ACAAATGTGAGCAATAGATAATTGGAACACTAGTTTTTAAATATTGTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGTGAGCAATAGATAATTGGAACACTAGTTTTTAAATATTGTGAT  500

seq1  TTTCAAGAAAACATAGCTAAATTTGGTGTCCCTAAATTTGACCCAGGTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGAAAACATAGCTAAATTTGGTGTCCCTAAATTTGACCCAGGTAG  550

seq1  TTCATTTGTAATTTTTAATTGGGTATTTTCTTCATTTACATTTCCAATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTGTAATTTTTAATTGGGTATTTTCTTCATTTACATTTCCAATGC  600

seq1  TATCCCAAAAGTCCCCCATACCCCGCCCCACTCCCCCTCCCCAACTCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCAAAAGTCCCCCATACCCCGCCCCACTCCCCCTCCCCAACTCCCA  650

seq1  CTTCTTAGCCCTGGCGTTCCTCTGTACTGAGGCATATAAAGTTTGCAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTAGCCCTGGCGTTCCTCTGTACTGAGGCATATAAAGTTTGCAAGA  700

seq1  CCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTCTGATAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTCTGATAC  750

seq1  ATATGCAGCTAGAGACACGAGCTCTGGGGATACTGGTTAGTTCATATTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCAGCTAGAGACACGAGCTCTGGGGATACTGGTTAGTTCATATTGT  800

seq1  TGTTCCACCTATAGGGTTGCAGACCCCTTTTGATTTTATTGATCATATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCACCTATAGGGTTGCAGACCCCTTTTGATTTTATTGATCATATAA  850

seq1  TTTGATTATACTCTAAAACACTTTTCAATAGCATTCATTCTTTAACCTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTATACTCTAAAACACTTTTCAATAGCATTCATTCTTTAACCTTT  900

seq1  AAATTCTTTACTTATATGTTTTTGCATCAAATGTCCTGTTATAATATCAG  950
      |||||||||||||||||| ||||||||| ||||||||| |||||||||||
seq2  AAATTCTTTACTTATATG-TTTTGCATC-AATGTCCTG-TATAATATCAG  947

seq1  AGCATGTGATAAATTTTGGTTTCAGAAATCACACTCATTGGTCTTTGTCA  1000
      || |||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AG-ATGTGATAAATTTTGGTTTCAGAAATCACACTCA-TGGTCTTTGTCA  995

seq1  GAATATTTTAAGATACAGTGCTTAGAGAAAACACAGAAACATAGGAAGGA  1050
      | ||| |||||||||||||||| ||||||| ||| ||| | |||||  ||
seq2  G-ATA-TTTAAGATACAGTGCTAAGAGAAACCAC-GAATC-TAGGA--GA  1039

seq1  ATAATGCTGGTCTGTCCAAGTGGCAGTAATTAATTCTAGTCAAAGGTCCA  1100
         |||||||||||||  |||||||| |||  | ||||||| ||||||||
seq2  --TATGCTGGTCTGTC--AGTGGCAG-AAT--AATCTAGTC-AAGGTCCA  1081

seq1  TGACGTAATAAATTTTGGGAAGCTGGCT  1128
      |||||||||||  || ||||||||||||
seq2  TGACGTAATAA--TTGGGGAAGCTGGCT  1107