BAC Information

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BAC

Clone NameB6Ng01-020P14
Chromosome3 (Build37)
Map Location 65,424,788 - 65,425,959
singlet/doubletsinglet
Overlap geneLOC100040978
Upstream gene4930518C23Rik, 4933425M15Rik, LOC670110, Kcnab1, Ssr3, EG433604, EG667093, LOC100041083, 4931440P22Rik, Tiparp, LOC545530
Downstream geneEG624866, Ccnl1, LOC625048, Veph1, Tpi-rs2, Ptx3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020P14.bB6Ng01-020P14.g
ACCDH853620DH853621
length1,160488
definitionDH853620|Mus musculus domesticus DNA, BAC clone: B6Ng01-020P14, 5' end.DH853621|Mus musculus domesticus DNA, BAC clone: B6Ng01-020P14, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaatctaggaagaagccggcatataaccctgattctggtccttgc
acccttccacctgtctgctgacctgtctagaacacagtgctaatgacaat
gacagccatctgtttactataacacacctccatgcctgagtgcaggaaga
cttatcaactgatttttaaggaataccagcctaatatgaacggggcataa
taggaaaaagtaagatcttatcaagtaggtttgggtttctgaaaactggt
gctaacaatgcctgcatttcctgataggagctctcgtgctagtgtgtcta
gtgcttcacacctctttgacacatcactggtgttctgtaaacacagggag
cccttgacaggactaggacttcctttacctctcagtggaaagttacagag
gccagaagaataagtatatttcttatgcatagttacattgaaatcaagtt
tttaaggggctggatagatggctcagaggttaagagtactggctgttctt
ccagaagtccccggttcaattcccagcacccacatggcagttcacagctg
tctgtaactgttgtactatgagatctaatgccctcttctggtgtgcatag
ttacatgctgacaaaatacccatatacataatataaatgaatgaataaat
aaacaaatctttagtaataaaaaagaaaatctataaaagaaacaaataag
aatcttttacttttgtggtctcttggtacccctcctgggtatgtgctgga
agagaaaaaaaatcttatataatagatacactttatatattcaagtgtaa
tagttatagttgcatacccacatttaatagttatatgtatatactcatat
ttaatagacatatttatatacctgtgcttaatagatacatttacatatcc
atatttgatagatatattataaaactatgtttatagattcacttatatat
gcatgtttatcatggtggcattcacaacagtcaagttatggaatcttatg
tttctgtcacatggagagaacaaaaatatgattatatatatttacccccc
cccccttttttatgtacattatatacttcaccaccgccccatttatcgga
ctcatttgcaatatagccataagggattctaagtaatgactttgcggaaa
tgatggatgg

acggtccctagttggtggaattgtttgggagggattggaagatatagtct
tgttgaaggaggtatgtcactagggtggggtggagtagactttgaggtct
caaaaggctactgccattcctaataggccctttctctgctcctgcttgtg
gatgaagatgtgagctctcagctgttcctgctgccatgcttttgttctgc
catcatggactccaatcctctgagactgtaagccccaattaaatgctttc
tttcatgaattgccttggtcattgatcatttaacacaacaatagaaaagt
aactaaagaaggtacagaaaaaactgtgtgtgtagggtttaatactacct
atggtggtttaggactgaatgaggatttttgttttgtttgaaacagggtg
cactatgtacctctggctatcctggaattcactatgtagaccagaaaggc
ctatagctcacagagatccatgttcctctgctttctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_65424788_65425959
seq2: B6Ng01-020P14.b_44_1203

seq1  GAATTCAATCTAGGAAGAAGCCGGCATATAACCCTGATTCTGGTCCTTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCTAGGAAGAAGCCGGCATATAACCCTGATTCTGGTCCTTGC  50

seq1  ACCCTTCCACCTGTCTGCTGACCTGTCTAGAACACAGTGCTAATGACAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTCCACCTGTCTGCTGACCTGTCTAGAACACAGTGCTAATGACAAT  100

seq1  GACAGCCATCTGTTTACTATAACACACCTCCATGCCTGAGTGCAGGAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCCATCTGTTTACTATAACACACCTCCATGCCTGAGTGCAGGAAGA  150

seq1  CTTATCAACTGATTTTTAAGGAATACCAGCCTAATATGAACGGGGCATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCAACTGATTTTTAAGGAATACCAGCCTAATATGAACGGGGCATAA  200

seq1  TAGGAAAAAGTAAGATCTTATCAAGTAGGTTTGGGTTTCTGAAAACTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAAAAGTAAGATCTTATCAAGTAGGTTTGGGTTTCTGAAAACTGGT  250

seq1  GCTAACAATGCCTGCATTTCCTGATAGGAGCTCTCGTGCTAGTGTGTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACAATGCCTGCATTTCCTGATAGGAGCTCTCGTGCTAGTGTGTCTA  300

seq1  GTGCTTCACACCTCTTTGACACATCACTGGTGTTCTGTAAACACAGGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTCACACCTCTTTGACACATCACTGGTGTTCTGTAAACACAGGGAG  350

seq1  CCCTTGACAGGACTAGGACTTCCTTTACCTCTCAGTGGAAAGTTACAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGACAGGACTAGGACTTCCTTTACCTCTCAGTGGAAAGTTACAGAG  400

seq1  GCCAGAAGAATAAGTATATTTCTTATGCATAGTTACATTGAAATCAAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAAGAATAAGTATATTTCTTATGCATAGTTACATTGAAATCAAGTT  450

seq1  TTTAAGGGGCTGGATAGATGGCTCAGAGGTTAAGAGTACTGGCTGTTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGGGCTGGATAGATGGCTCAGAGGTTAAGAGTACTGGCTGTTCTT  500

seq1  CCAGAAGTCCCGGGTTCAATTCCCAGCACCCACATGGCAGTTCACAGCTG  550
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGTCCCCGGTTCAATTCCCAGCACCCACATGGCAGTTCACAGCTG  550

seq1  TCTGTAACTGTTGTACTATGAGATCTAATGCCCTCTTCTGGTGTGCATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAACTGTTGTACTATGAGATCTAATGCCCTCTTCTGGTGTGCATAG  600

seq1  TTACATGCTGACAAAATACCCATATACATAATATAAATGAATGAATAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATGCTGACAAAATACCCATATACATAATATAAATGAATGAATAAAT  650

seq1  AAACAAATCTTTAGTAATAAAAAAGAAAATCTATAAAAGAAACAAATAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAATCTTTAGTAATAAAAAAGAAAATCTATAAAAGAAACAAATAAG  700

seq1  AATC-TTTACTTTTGTGGTCTCTTGGTACCCCTCCTGGGTATGTGCTGGA  749
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTTACTTTTGTGGTCTCTTGGTACCCCTCCTGGGTATGTGCTGGA  750

seq1  AGAGAAAAAAAATCTTATATAATAGATACAC-TTATATATTCAAGTGTAA  798
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGAGAAAAAAAATCTTATATAATAGATACACTTTATATATTCAAGTGTAA  800

seq1  TAGTTATAGTTGCATACCCACATTTAATAGTTATATGTATATACTCATAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTATAGTTGCATACCCACATTTAATAGTTATATGTATATACTCATAT  850

seq1  TTAATAGACATATTTATATACCTGTGCTTAATAGATACATTTACATATCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAGACATATTTATATACCTGTGCTTAATAGATACATTTACATATCC  900

seq1  ATATTTGATAGATATACTTATAAAACTATGTTTAATAGATTCACTTATAT  948
      |||||||||||||||| |||||||||||||||| ||||||||||||||||
seq2  ATATTTGATAGATATA-TTATAAAACTATGTTT-ATAGATTCACTTATAT  948

seq1  ATGCATGTTTATCATGGTGGCATTCACAACAGTCAAGTTATGGAATCTTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGTTTATCATGGTGGCATTCACAACAGTCAAGTTATGGAATCTTA  998

seq1  TGTTTCTGTCAACAATGAAGAGGAACAAAAAATATGATTATATATATATA  1048
      |||||||||||   ||| ||| |||| |||||||||||||||||||| ||
seq2  TGTTTCTGTCA--CATGGAGA-GAAC-AAAAATATGATTATATATATTTA  1044

seq1  CACACACACACATATATATATGTACATATATATACATACACACACACACA  1098
      | | | | | |   | | ||||||||| ||||||| | ||| |||   | 
seq2  CCCCCCCCCCC--TTTTTTATGTACAT-TATATAC-TTCAC-CACCGCCC  1089

seq1  CATATATACAGACATACAATTGCATATATAGCCATAAAGGGATCTAAGTA  1148
      ||| ||| | |||   || ||||| |||||||||||| ||  ||||||| 
seq2  CATTTAT-CGGAC--TCATTTGCA-ATATAGCCATAAGGGATTCTAAGT-  1134

seq1  AATGACTTGCAGGAAA--ATGGATGG  1172
      ||||||||   |||||  ||||||||
seq2  AATGACTTTGCGGAAATGATGGATGG  1160


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