BAC Information

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BAC

Clone NameB6Ng01-021A02
Chromosome3 (Build37)
Map Location 97,524,617 - 97,633,476
singlet/doubletdoublet
Overlap genePde4dip
Upstream genePolr3c, Zfp364, Cd160, Pdzk1, Gpr89, Gja8, 9230114J08Rik, Gja5, Acp6, Bcl9, Olfr1402, Chd1l, Fmo5, Prkab2
Downstream geneSec22b, EG433632, LOC100042975, Notch2, Adam30, LOC622561, Reg4, Hmgcs2, Phgdh, Zfp697, LOC100043461, Hsd3b4, LOC100043456, EG545555, LOC676433, Hsd3b5, LOC668543, Hsd3b2, Hsd3b3, Hsd3b6, LOC545556
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021A02.bB6Ng01-021A02.g
ACCDH853637DH853638
length1,001695
definitionDH853637|Mus musculus domesticus DNA, BAC clone: B6Ng01-021A02, 5' end.DH853638|Mus musculus domesticus DNA, BAC clone: B6Ng01-021A02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,524,617 - 97,525,618)(97,632,782 - 97,633,476)
sequence
gaattctagtcttggagtttcaagcagaaattgttaggtgtggatttctg
ggagaaatgaatgggacatagagctgagatttcaaaagagaaaaaaaggt
ataggtctgttgccaaattggcatgcaggagggagaaaaaaggaacatgt
atagaaaagaatatttacttactcttacatatttacatttcagggtgaag
cctgatgttttcacagtataacgggcttaaagcttaacaatggactgagt
gtttaagaatgagtggaggcagccgggcatggtggcgcacgcctttaatc
ccagcactcgggaggcagaggcaggcggatttctgtgttcgaggccaccc
tggtctacaaagtgagttccaggacagccagggctatacagagaaaccct
gtctcgaaaaacaaacaaaacaaacaaacaaacaaacaaacaaaagaatg
agtggaggctttacacaactcagattttcaggttaatagctccatggaaa
aatgaaaataacctgcaagggtatctatacacggcatatatagaattaag
ggataccctgctccgtgacatcacagctaactgcacacacatagatgcct
aaggaaaacttacattttaacttaggcaaaacttaaagaaagaattatct
gggtaagtcaacataaaagaactgatgtctagaatggcaacagatttaat
aataagtggtgtgtatgtgtgtgtgttgcatgttagtgcatgtgtgtgta
cccatgtggagcctggaggttaacatctggtgtcttcctctattgatcca
ttttttagatccatatcattttaaaaacaggtcatcatactgaaactcta
cagtatcaatgtgtttttcaacattaaaagaaaaaatctccttatagcca
aagtagccaattgataggtactttgtcatttttataattttcatgaaatg
gcaaagattactcactgaggctgcatggctgctgtggaaaggacagtgtg
a
gaattcattttgttcttcctatttgcggagttcacgatgtccttgggttg
taattttcacgtagtcattggttcagaactcttgtagcaagttcagattg
ttcactgttaactttagtttgctagagtactacacacacaaaaatatata
tgacaacctgtttctaaggagaaatgacgtcagggatgcagatggaattt
aagtctaatcaaacccatggagaacagagaagctagtaatttaattatca
gtctgttctttcattcagcactcatgtactgagtgcctcctgtacactag
gcatcatttttggtactgggggtaaagcagacccactccagttttttcat
ggagagtgcatgctgactgagagaaatttaaggtaaatgggtcagtgcag
tcttagattctgcataatggaataataatggaatggactcttagggtgac
aaggactgctgggctgaggtgtgggatgggctctagtcttaaatggggcc
cttcattggaagaatatttgacagctatctagggcaggagcacagcatgg
tgaaggaccagccatcttagaggccccgaggagcaaggctttttacctgt
tttgagaaagaacaagaagagccagtgtaactgggacagcatgagcaggt
gggaactcagcagagagaagggaagaggggagtagtgggatggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_97524617_97525618
seq2: B6Ng01-021A02.b_44_1044

seq1  GAATTCTAGTCTTGGAGTTTCAAGCAGAAATTGTTAGGTGTGGATTTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGTCTTGGAGTTTCAAGCAGAAATTGTTAGGTGTGGATTTCTG  50

seq1  GGAGAAATGAATGGGACATAGAGCTGAGATTTCAAAAGAGAAAAAAAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAATGAATGGGACATAGAGCTGAGATTTCAAAAGAGAAAAAAAGGT  100

seq1  ATAGGTCTGTTGCCAAATTGGCATGCAGGAGGGAGAAAAAAGGAACATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTCTGTTGCCAAATTGGCATGCAGGAGGGAGAAAAAAGGAACATGT  150

seq1  ATAGAAAAGAATATTTACTTACTCTTACATATTTACATTTCAGGGTGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAAGAATATTTACTTACTCTTACATATTTACATTTCAGGGTGAAG  200

seq1  CCTGATGTTTTCACAGTATAACGGGCTTAAAGCTTAACAATGGACTGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATGTTTTCACAGTATAACGGGCTTAAAGCTTAACAATGGACTGAGT  250

seq1  GTTTAAGAATGAGTGGAGGCAGCCGGGCATGGTGGCGCACGCCTTTAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAGAATGAGTGGAGGCAGCCGGGCATGGTGGCGCACGCCTTTAATC  300

seq1  CCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGTGTTCGAGGCCACCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGTGTTCGAGGCCACCC  350

seq1  TGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCT  400

seq1  GTCTCGAAAAACAAACAAAACAAACAAACAAACAAACAAACAAAAGAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCGAAAAACAAACAAAACAAACAAACAAACAAACAAACAAAAGAATG  450

seq1  AGTGGAGGCTTTACACAACTCAGATTTTCAGGTTAATAGCTCCATGGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAGGCTTTACACAACTCAGATTTTCAGGTTAATAGCTCCATGGAAA  500

seq1  AATGAAAATAACCTGCAAGGGTATCTATACACGGCATATATAGAATTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAATAACCTGCAAGGGTATCTATACACGGCATATATAGAATTAAG  550

seq1  GGATACCCTGCTCCGTGACATCACAGCTAACTGCACACACATAGATGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACCCTGCTCCGTGACATCACAGCTAACTGCACACACATAGATGCCT  600

seq1  AAGGAAAACTTACATTTTAACTTAGGCAAAACTTAAAGAAAGAATTATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAACTTACATTTTAACTTAGGCAAAACTTAAAGAAAGAATTATCT  650

seq1  GGGTAAGTCAACATAAAAGAACTGATGTCTAGAATGGCAACAGATTTAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAGTCAACATAAAAGAACTGATGTCTAGAATGGCAACAGATTTAAT  700

seq1  AATAAGTGGTGTGTATGTGTGTGTGTTGCATGTTAGTGCATGTGTGTGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTGGTGTGTATGTGTGTGTGTTGCATGTTAGTGCATGTGTGTGTA  750

seq1  CCCATGTGGAGCCTGGAGGTTAACATCTGGTGTCTTCCTCTATTGATCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGTGGAGCCTGGAGGTTAACATCTGGTGTCTTCCTCTATTGATCCA  800

seq1  TTTTTTAGATCCATATCATTTTAAAAACAGGTCATCATACTGAAACTCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAGATCCATATCATTTTAAAAACAGGTCATCATACTGAAACTCTA  850

seq1  CAGTATCAATGTGTTTTTCAACATTAAAAGAAAAAAATCTCCTTATAGCC  900
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CAGTATCAATGTGTTTTTCAACATTAAAAG-AAAAAATCTCCTTATAGCC  899

seq1  AAAGTAGCCAATTGATAGGTAC-TTGTCATTTTTATAATTTTCATGAAAT  949
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAAGTAGCCAATTGATAGGTACTTTGTCATTTTTATAATTTTCATGAAAT  949

seq1  GGCAAAGATTACTCACTGAGGGCTGCATGGCTGCTGTGGAAAGGACAGTG  999
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GGCAAAGATTACTCACTGA-GGCTGCATGGCTGCTGTGGAAAGGACAGTG  998

seq1  TGA  1002
      |||
seq2  TGA  1001

seq1: chr3_97632782_97633476
seq2: B6Ng01-021A02.g_66_760 (reverse)

seq1  TTCCATCCCACTACTCCCCTCTTCCCTTCTCTCTGCTGAGTTCCCACCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATCCCACTACTCCCCTCTTCCCTTCTCTCTGCTGAGTTCCCACCTG  50

seq1  CTCATGCTGTCCCAGTTACACTGGCTCTTCTTGTTCTTTCTCAAAACAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGCTGTCCCAGTTACACTGGCTCTTCTTGTTCTTTCTCAAAACAGG  100

seq1  TAAAAAGCCTTGCTCCTCGGGGCCTCTAAGATGGCTGGTCCTTCACCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGCCTTGCTCCTCGGGGCCTCTAAGATGGCTGGTCCTTCACCATG  150

seq1  CTGTGCTCCTGCCCTAGATAGCTGTCAAATATTCTTCCAATGAAGGGCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTCCTGCCCTAGATAGCTGTCAAATATTCTTCCAATGAAGGGCCC  200

seq1  CATTTAAGACTAGAGCCCATCCCACACCTCAGCCCAGCAGTCCTTGTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAAGACTAGAGCCCATCCCACACCTCAGCCCAGCAGTCCTTGTCAC  250

seq1  CCTAAGAGTCCATTCCATTATTATTCCATTATGCAGAATCTAAGACTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGAGTCCATTCCATTATTATTCCATTATGCAGAATCTAAGACTGCA  300

seq1  CTGACCCATTTACCTTAAATTTCTCTCAGTCAGCATGCACTCTCCATGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCCATTTACCTTAAATTTCTCTCAGTCAGCATGCACTCTCCATGAA  350

seq1  AAAACTGGAGTGGGTCTGCTTTACCCCCAGTACCAAAAATGATGCCTAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGGAGTGGGTCTGCTTTACCCCCAGTACCAAAAATGATGCCTAGT  400

seq1  GTACAGGAGGCACTCAGTACATGAGTGCTGAATGAAAGAACAGACTGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGGAGGCACTCAGTACATGAGTGCTGAATGAAAGAACAGACTGATA  450

seq1  ATTAAATTACTAGCTTCTCTGTTCTCCATGGGTTTGATTAGACTTAAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATTACTAGCTTCTCTGTTCTCCATGGGTTTGATTAGACTTAAATT  500

seq1  CCATCTGCATCCCTGACGTCATTTCTCCTTAGAAACAGGTTGTCATATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTGCATCCCTGACGTCATTTCTCCTTAGAAACAGGTTGTCATATAT  550

seq1  ATTTTTGTGTGTGTAGTACTCTAGCAAACTAAAGTTAACAGTGAACAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGTGTGTGTAGTACTCTAGCAAACTAAAGTTAACAGTGAACAATC  600

seq1  TGAACTTGCTACAAGAGTTCTGAACCAATGACTACGTGAAAATTACAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTGCTACAAGAGTTCTGAACCAATGACTACGTGAAAATTACAACC  650

seq1  CAAGGACATCGTGAACTCCGCAAATAGGAAGAACAAAATGAATTC  695
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGACATCGTGAACTCCGCAAATAGGAAGAACAAAATGAATTC  695