BAC Information

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BAC

Clone NameB6Ng01-021A09
Chromosome3 (Build37)
Map Location 108,163,887 - 108,361,797
singlet/doubletdoublet
Overlap geneSort1, Mybphl, Psrc1, Celsr2, Sars, 5330417C22Rik, 1700013F07Rik, 2010200O16Rik
Upstream geneKcnc4, Slc6a17, Ubl4b, Alx3, 6330569M22Rik, Ahcyl1, Csf1, LOC280047, Eps8l3, Gstm5, LOC671031, Gstm7, Gstm6, LOC668674, Gstm3, LOC624701, Gstm2, Gstm1, LOC100043641, Gstm4, Ampd2, Gnat2, Gnai3, Gpr61, LOC100043654, Amigo1, Cyb561d1, Atxn7l2, Sypl2, LOC668686, Psma5
Downstream geneTaf13, Wdr47, LOC100043166, Clcc1, Gpsm2, 4921525H12Rik, Stxbp3a, Fndc7, Prpf38b, 4921515J06Rik, B430201A12Rik, 4930443G12Rik, Slc25a24, Vav3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021A09.bB6Ng01-021A09.g
ACCDH853651DH853652
length6831,038
definitionDH853651|Mus musculus domesticus DNA, BAC clone: B6Ng01-021A09, 5' end.DH853652|Mus musculus domesticus DNA, BAC clone: B6Ng01-021A09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,163,887 - 108,164,569)(108,360,745 - 108,361,797)
sequence
gaattcctagtgcagttctcattctccgcatgccctcagctgtggtcagg
tgacttcctgtcccctggcagctctgctgagtccctgtgtttgagcctcc
agggagaagggtttgggctgcattcttcttatccccatgcacagaaacgc
tcagggtccccacgtgcctgttgtcctcccctctagtcctttgttccctt
tctgagcatgtggcccctcccccggctgtgaggggcagccgccttcctag
gaaagtgtaatgcaggatcaagaccaccactgcatgtgtactgaaaactg
cagacttctgcccgcttgggacagaacattgcatgtgaggtgggattatc
aagtttcaaagacctgtgtcaaccatacagcaaaggcagaccccataacg
acgtcccacaaaatggaaataaaacgcaaaatctctttagcattgtgtaa
ataaatctggatgtgtttaactttgtactggtaattttctgtatatttgc
aatatttgggttagaaataaacagcctggactttggtacctaacctacta
agatgagtaagctacagttttgtattgttttgttttttagtgagtgtttc
tagctttctgccttcaaaaagcaaaatctagcaacgaaagaagcatcaac
ttgaaagtcaacactgagcctttctagcttgga
gaattccaaaccctccaactcatcaactgccaaccaagggataaagatga
agaacttgtcggaaacctggacccagtgtaggagagttgagctaaaatca
ttagtgtctccaagatgacactgaagcctctgcctgccatatgtggggaa
acctcatggtcacgaacatttttgcttcaggggattccagaaagccaacc
tttagatctctacgttaatcagccctcagcagcaagtctgtatgtccaga
taaaccacgcccccattgatatgattatctatctcctgcttaaacaccta
tgctgggtggtagagcatttggttagcattggcaaggtcttgggttcatt
ctccaacactggtaaaaacaacctacagctggccgtctatttggctcttt
agtccctcatcagaatctttgaaaactgaggctcactggggaatgatata
ggctttgttcagacttcccagaaggtaaagagaggcattctgcatagcct
tggctgtcctggaactctctatggagagcaggctagcctcaaactcacag
agagccgcctgcctctgccttctgaattagaggcaagtgccaggagataa
tttttcaggcttcattttcttcattggctaatttggatctggatctggtg
aactgaagagagggagaggggctagatgagaactgggagttacgaaaggc
gaaacaattgtttggctgttggagtgtgttctttctgtgcatctgggaac
ttgagagagggtggttctgcagagagaacagattgccacatgctggcagc
ctgagggattctcaagagaacctgagtgcataggaaagccaggttatcag
taagaagcagtaacagaagcaagcaggcagcagtcttccgcttaccaggg
tcccagagaagactcactcactgacagaggaaagaacaactctcgcttat
tcctaagcttttaaacactttctaatcactagtgctaaatactgtactgg
gtttaaaacgaatgctggggaggggtctattaaaaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_108163887_108164569
seq2: B6Ng01-021A09.b_46_728

seq1  GAATTCCTAGTGCAGTTCTCATTCTCCGCATGCCCTCAGCTGTGGTCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGTGCAGTTCTCATTCTCCGCATGCCCTCAGCTGTGGTCAGG  50

seq1  TGACTTCCTGTCCCCTGGCAGCTCTGCTGAGTCCCTGTGTTTGAGCCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTCCTGTCCCCTGGCAGCTCTGCTGAGTCCCTGTGTTTGAGCCTCC  100

seq1  AGGGAGAAGGGTTTGGGCTGCATTCTTCTTATCCCCATGCACAGAAACGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGAAGGGTTTGGGCTGCATTCTTCTTATCCCCATGCACAGAAACGC  150

seq1  TCAGGGTCCCCACGTGCCTGTTGTCCTCCCCTCTAGTCCTTTGTTCCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGTCCCCACGTGCCTGTTGTCCTCCCCTCTAGTCCTTTGTTCCCTT  200

seq1  TCTGAGCATGTGGCCCCTCCCCCGGCTGTGAGGGGCAGCCGCCTTCCTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGCATGTGGCCCCTCCCCCGGCTGTGAGGGGCAGCCGCCTTCCTAG  250

seq1  GAAAGTGTAATGCAGGATCAAGACCACCACTGCATGTGTACTGAAAACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGTAATGCAGGATCAAGACCACCACTGCATGTGTACTGAAAACTG  300

seq1  CAGACTTCTGCCCGCTTGGGACAGAACATTGCATGTGAGGTGGGATTATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTTCTGCCCGCTTGGGACAGAACATTGCATGTGAGGTGGGATTATC  350

seq1  AAGTTTCAAAGACCTGTGTCAACCATACAGCAAAGGCAGACCCCATAACG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCAAAGACCTGTGTCAACCATACAGCAAAGGCAGACCCCATAACG  400

seq1  ACGTCCCACAAAATGGAAATAAAACGCAAAATCTCTTTAGCATTGTGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCCCACAAAATGGAAATAAAACGCAAAATCTCTTTAGCATTGTGTAA  450

seq1  ATAAATCTGGATGTGTTTAACTTTGTACTGGTAATTTTCTGTATATTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCTGGATGTGTTTAACTTTGTACTGGTAATTTTCTGTATATTTGC  500

seq1  AATATTTGGGTTAGAAATAAACAGCCTGGACTTTGGTACCTAACCTACTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTGGGTTAGAAATAAACAGCCTGGACTTTGGTACCTAACCTACTA  550

seq1  AGATGAGTAAGCTACAGTTTTGTATTGTTTTGTTTTTTAGTGAGTGTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAGTAAGCTACAGTTTTGTATTGTTTTGTTTTTTAGTGAGTGTTTC  600

seq1  TAGCTTTCTGCCTTCAAAAAGCAAAATCTAGCAACGAAAGAAGCATCAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTTCTGCCTTCAAAAAGCAAAATCTAGCAACGAAAGAAGCATCAAC  650

seq1  TTGAAAGTCAACACTGAGCCTTTCTAGCTTGGA  683
      |||||||||||||||||||||||||||||||||
seq2  TTGAAAGTCAACACTGAGCCTTTCTAGCTTGGA  683

seq1: chr3_108360745_108361797
seq2: B6Ng01-021A09.g_67_1103 (reverse)

seq1  TTTTTTAATAGTCCCCTCCCCCAGCATTCGTATTTAAAACCCAGTAACAG  50
      ||||||||||| ||||| ||||||||||||  ||| ||||||||| ||||
seq2  TTTTTTAATAGACCCCT-CCCCAGCATTCG--TTTTAAACCCAGT-ACAG  46

seq1  TATTTAGCACTAGGTGATTTAGAAAGTGTTTAAAAAGCTTTAGGAAATAG  100
      |||||||||||| |||| ||||||||||||| |||||| |||||||  ||
seq2  TATTTAGCACTA-GTGA-TTAGAAAGTGTTT-AAAAGC-TTAGGAATAAG  92

seq1  CGAGAGTTGGTTCCTTTTCTCTGTCAGTTGAGTGAAGTCTTCTCTGGGGA  150
      |||||||||  | |||| ||||||||| |||||| |||||||||| ||||
seq2  CGAGAGTTG--TTCTTTCCTCTGTCAG-TGAGTG-AGTCTTCTCT-GGGA  137

seq1  CCCTGGTAAGCGGAAGACTGCTGCCTTGCTTGCTTCTGTTACTGCTTCTT  200
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CCCTGGTAAGCGGAAGACTGCTGCC-TGCTTGCTTCTGTTACTGCTTCTT  186

seq1  ACTGATAACCCTGGCTTTCCTATGCACTCAGGTTCTCTTGAGAAATCCCT  250
      |||||||| ||||||||||||||||||||||||||||||||| |||||||
seq2  ACTGATAA-CCTGGCTTTCCTATGCACTCAGGTTCTCTTGAG-AATCCCT  234

seq1  CAGGCTGCCAGCATGTGGCAATCTGTTCTCTCTGCAGAACCACCCTCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGCCAGCATGTGGCAATCTGTTCTCTCTGCAGAACCACCCTCTCT  284

seq1  CAAGTTCCCAGATGCACAGAAAGAACACACTCCAACAGCCAAACAATTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTCCCAGATGCACAGAAAGAACACACTCCAACAGCCAAACAATTGT  334

seq1  TTCGCCTTTCGTAACTCCCAGTTCTCATCTAGCCCCTCTCCCTCTCTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGCCTTTCGTAACTCCCAGTTCTCATCTAGCCCCTCTCCCTCTCTTCA  384

seq1  GTTCACCAGATCCAGATCCAAATTAGCCAATGAAGAAAATGAAGCCTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACCAGATCCAGATCCAAATTAGCCAATGAAGAAAATGAAGCCTGAA  434

seq1  AAATTATCTCCTGGCACTTGCCTCTAATTCAGAAGGCAGAGGCAGGCGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATCTCCTGGCACTTGCCTCTAATTCAGAAGGCAGAGGCAGGCGGC  484

seq1  TCTCTGTGAGTTTGAGGCTAGCCTGCTCTCCATAGAGAGTTCCAGGACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTGAGTTTGAGGCTAGCCTGCTCTCCATAGAGAGTTCCAGGACAG  534

seq1  CCAAGGCTATGCAGAATGCCTCTCTTTACCTTCTGGGAAGTCTGAACAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGCTATGCAGAATGCCTCTCTTTACCTTCTGGGAAGTCTGAACAAA  584

seq1  GCCTATATCATTCCCCAGTGAGCCTCAGTTTTCAAAGATTCTGATGAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATATCATTCCCCAGTGAGCCTCAGTTTTCAAAGATTCTGATGAGGG  634

seq1  ACTAAAGAGCCAAATAGACGGCCAGCTGTAGGTTGTTTTTACCAGTGTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAGAGCCAAATAGACGGCCAGCTGTAGGTTGTTTTTACCAGTGTTG  684

seq1  GAGAATGAACCCAAGACCTTGCCAATGCTAACCAAATGCTCTACCACCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATGAACCCAAGACCTTGCCAATGCTAACCAAATGCTCTACCACCCA  734

seq1  GCATAGGTGTTTAAGCAGGAGATAGATAATCATATCAATGGGGGCGTGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGGTGTTTAAGCAGGAGATAGATAATCATATCAATGGGGGCGTGGT  784

seq1  TTATCTGGACATACAGACTTGCTGCTGAGGGCTGATTAACGTAGAGATCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTGGACATACAGACTTGCTGCTGAGGGCTGATTAACGTAGAGATCT  834

seq1  AAAGGTTGGCTTTCTGGAATCCCCTGAAGCAAAAATGTTCGTGACCATGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTTGGCTTTCTGGAATCCCCTGAAGCAAAAATGTTCGTGACCATGA  884

seq1  GGTTTCCCCACATATGGCAGGCAGAGGCTTCAGTGTCATCTTGGAGACAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCCCCACATATGGCAGGCAGAGGCTTCAGTGTCATCTTGGAGACAC  934

seq1  TAATGATTTTAGCTCAACTCTCCTACACTGGGTCCAGGTTTCCGACAAGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATTTTAGCTCAACTCTCCTACACTGGGTCCAGGTTTCCGACAAGT  984

seq1  TCTTCATCTTTATCCCTTGGTTGGCAGTTGATGAGTTGGAGGGTTTGGAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATCTTTATCCCTTGGTTGGCAGTTGATGAGTTGGAGGGTTTGGAA  1034

seq1  TTC  1053
      |||
seq2  TTC  1037