BAC Information

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BAC

Clone NameB6Ng01-021D21
Chromosome3 (Build37)
Map Location 82,169,416 - 82,250,085
singlet/doubletdoublet
Overlap geneMtap9
Upstream geneLOC229443, LOC100041901, Ctso, Tdo2, Accn5, Gucy1b3, Gucy1a3
Downstream geneNpy2r, LOC100041940, EG633285, Lrat, Fgg, Fga, Fgb, Plrg1, EG627094, Dchs2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021D21.bB6Ng01-021D21.g
ACCDH853802DH853803
length1,184796
definitionDH853802|Mus musculus domesticus DNA, BAC clone: B6Ng01-021D21, 5' end.DH853803|Mus musculus domesticus DNA, BAC clone: B6Ng01-021D21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,248,892 - 82,250,085)(82,169,416 - 82,170,211)
sequence
gaattccatttggtctcttattctcgcatacaaaccatctatcagagtgg
taggaagaaatccaggcagctaaaggaactgacgctgcatgaaattgtgt
agaatcagttcttagttcaccctaaaagtaaaagaaaaaagtgtatagat
tattttaattatatgttgtactgagttaattataatatcatgtgaagctt
taaaattagatgataaatctgggaatactttgctttccctcaatgatacc
atttaatatataggtactgtatttaaaaaagtagcaataaacaatgaaaa
taagccagcaacctcaaccagagttcatcagttttatacacccatgtgta
taaattgatggtgtgtataattaggcacatgcctaattatagtatatttt
gtcataggtgtgcatttctttagagatcatcatatttaagacatgcaata
gtttctcaccacaaaacccccattgtgtcccattcccccatctgttacct
tctatgttcctcagttcctggcaattattattacggtttcgttctcaaca
actatcttctcaccccaattgacctaaggatttcttctgtctacctgttc
ctttggttttaactgtgaaagacagaactatatgtactgaagggtggtgg
agagacagggtttattgaagggtagagagaggaaagcgcgttctgaaaga
gtgagagcaagtgatggccagagagctccattctaggtaagctttgggct
accttatgaaacctctagggcaagggatgtttccctgagggactttgcac
tgtccaggtattagcaggcttgtttttgactccacagaaggagcagtgat
gtgtctgtattctctgaaagcctcctcctgcacactaatctgataaggtt
tggcctcatgcagacagtttatgatagttatccattgctgacctttagag
agtttagaattgtcatatctcatccagggctacacatctgtcaggttctg
tgctgagggctaatccaagttctttggtctagtcagtggcttttttaaaa
ctgttgacccagggaaaaggtccatccctatgcccacaagtctatagcat
ctaatatctctatctaataatatctcgtagattataaggggaattatttc
tgggctctggggttcatcggaagtgcataatttc
gaattcctgaaggatctaaatgaatggatgaatagaatacccagctaatt
cattcatgaaaagagggatgcgcttcctgggtttagctgtactctctaat
tcttagaagcctttcccggagtgtttggaacttgatatttgtaatgtgag
gcgcaggtcagtggtagagcatggccagacctgcgtgaagcctctggttc
ctccaaagcccacagcactccactgatgctttgctctgctcccgtttacc
tttgtaccgcttgtgctaaccagactctggcctggcagagcagctgttac
tatggcggttttttgctagggtcttgcagggtgctatagttaaggtgttt
ttgcattcatctcaggtctgcagtttagtggagcttttagccttgggcac
aattcaaccctgacctcatttaatttatttgtgaaatggagatgttagtt
tagacacatctaagtggttcagtactcaagagttaaaatcaacaattatt
ttctacatttgcagtgctcagaaaagttctagaataagtgaaatattgtt
aatatttaggatcttttcataagcaagttatcaatttgtctctctgtgtg
tattctgaactcattgtgtttcctcatgctacaaactgatgatgagcaag
aatactacattcaaacggcttaccagttgacggggactttagagtttagt
aagaaactgtatgaaagttatagtaagaatggcagaaagtggatatctga
gttacctaaaatgtcaaggaaggtgtctggaggaggaggaggggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_82248892_82250085
seq2: B6Ng01-021D21.b_47_1230 (reverse)

seq1  GAAATTATGCA-TTCTGAGTAGAACCCAAGAGCCCAGTAATAATTCCACT  49
      ||||||||||| ||| ||   |||||| ||||||||| ||||||||| ||
seq2  GAAATTATGCACTTCCGA--TGAACCCCAGAGCCCAGAAATAATTCCCCT  48

seq1  TATTAATCTTTTCTGTTTTTTTTTTTATGTATAGTGA-ATTAGATGCTAG  98
      || ||||||      | || |      |  |||| || ||||||||||| 
seq2  TA-TAATCTACGAGATATTAT------TAGATAGAGATATTAGATGCTA-  90

seq1  TAGACTTGTAGGGCATAGGGAATGGACCTCTTCCCTGTGGTCAACAG-TT  147
      ||||||||| |||||||||| |||||||| ||||||| ||||||||| ||
seq2  TAGACTTGT-GGGCATAGGG-ATGGACCTTTTCCCTG-GGTCAACAGTTT  137

seq1  TATAAAAG-CACTGACTAGAACAAAGGAACTTGGATTAGCCCTCAGCACA  196
      || ||||| ||||||||||| |||| ||||||||||||||||||||||||
seq2  TAAAAAAGCCACTGACTAGACCAAA-GAACTTGGATTAGCCCTCAGCACA  186

seq1  GAACCTGACAGATGTGTAGCCCTGGATGAGATATGAC-ATTCTAAACTAC  245
      ||||||||||||||||||||||||||||||||||||| |||||||||| |
seq2  GAACCTGACAGATGTGTAGCCCTGGATGAGATATGACAATTCTAAACT-C  235

seq1  TCTAAAGGTCAGCAATGGATAACTATCATAAACTGTCTGCATGAGGCCAA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAGGTCAGCAATGGATAACTATCATAAACTGTCTGCATGAGGCCAA  285

seq1  ACCTTATCAGATTAGTGTGCAGGAGGAGGCTTTCAGAGAATACAGACACA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTATCAGATTAGTGTGCAGGAGGAGGCTTTCAGAGAATACAGACACA  335

seq1  TCACTGCTCCTTCTGTGGAGTCAAAAACAAGCCTGCTAATACCTGGACAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGCTCCTTCTGTGGAGTCAAAAACAAGCCTGCTAATACCTGGACAG  385

seq1  TGCAAAGTCCCTCAGGGAAACATCCCTTGCCCTAGAGGTTTCATAAGGTA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGTCCCTCAGGGAAACATCCCTTGCCCTAGAGGTTTCATAAGGTA  435

seq1  GCCCAAAGCTTACCTAGAATGGAGCTCTCTGGCCATCACTTGCTCTCACT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAAGCTTACCTAGAATGGAGCTCTCTGGCCATCACTTGCTCTCACT  485

seq1  CTTTCAGAACGCGCTTTCCTCTCTCTACCCTTCAATAAACCCTGTCTCTC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGAACGCGCTTTCCTCTCTCTACCCTTCAATAAACCCTGTCTCTC  535

seq1  CACCACCCTTCAGTACATATAGTTCTGTCTTTCACAGTTAAAACCAAAGG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACCCTTCAGTACATATAGTTCTGTCTTTCACAGTTAAAACCAAAGG  585

seq1  AACAGGTAGACAGAAGAAATCCTTAGGTCAATTGGGGTGAGAAGATAGTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGTAGACAGAAGAAATCCTTAGGTCAATTGGGGTGAGAAGATAGTT  635

seq1  GTTGAGAACGAAACCGTAATAATAATTGCCAGGAACTGAGGAACATAGAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGAACGAAACCGTAATAATAATTGCCAGGAACTGAGGAACATAGAA  685

seq1  GGTAACAGATGGGGGAATGGGACACAATGGGGGTTTTGTGGTGAGAAACT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAACAGATGGGGGAATGGGACACAATGGGGGTTTTGTGGTGAGAAACT  735

seq1  ATTGCATGTCTTAAATATGATGATCTCTAAAGAAATGCACACCTATGACA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCATGTCTTAAATATGATGATCTCTAAAGAAATGCACACCTATGACA  785

seq1  AAATATACTATAATTAGGCATGTGCCTAATTATACACACCATCAATTTAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATACTATAATTAGGCATGTGCCTAATTATACACACCATCAATTTAT  835

seq1  ACACATGGGTGTATAAAACTGATGAACTCTGGTTGAGGTTGCTGGCTTAT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGGGTGTATAAAACTGATGAACTCTGGTTGAGGTTGCTGGCTTAT  885

seq1  TTTCATTGTTTATTGCTACTTTTTTAAATACAGTACCTATATATTAAATG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTGTTTATTGCTACTTTTTTAAATACAGTACCTATATATTAAATG  935

seq1  GTATCATTGAGGGAAAGCAAAGTATTCCCAGATTTATCATCTAATTTTAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCATTGAGGGAAAGCAAAGTATTCCCAGATTTATCATCTAATTTTAA  985

seq1  AGCTTCACATGATATTATAATTAACTCAGTACAACATATAATTAAAATAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCACATGATATTATAATTAACTCAGTACAACATATAATTAAAATAA  1035

seq1  TCTATACACTTTTTTCTTTTACTTTTAGGGTGAACTAAGAACTGATTCTA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATACACTTTTTTCTTTTACTTTTAGGGTGAACTAAGAACTGATTCTA  1085

seq1  CACAATTTCATGCAGCGTCAGTTCCTTTAGCTGCCTGGATTTCTTCCTAC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATTTCATGCAGCGTCAGTTCCTTTAGCTGCCTGGATTTCTTCCTAC  1135

seq1  CACTCTGATAGATGGTTTGTATGCGAGAATAAGAGACCAAATGGAATTC  1194
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTGATAGATGGTTTGTATGCGAGAATAAGAGACCAAATGGAATTC  1184

seq1: chr3_82169416_82170211
seq2: B6Ng01-021D21.g_67_862

seq1  GAATTCCTGAAGGATCTAAATGAATGGATGAATAGAATACCCAGCTAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGAAGGATCTAAATGAATGGATGAATAGAATACCCAGCTAATT  50

seq1  CATTCATGAAAAGAGGGATGCGCTTCCTGGGTTTAGCTGTACTCTCTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATGAAAAGAGGGATGCGCTTCCTGGGTTTAGCTGTACTCTCTAAT  100

seq1  TCTTAGAAGCCTTTCCCGGAGTGTTTGGAACTTGATATTTGTAATGTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGAAGCCTTTCCCGGAGTGTTTGGAACTTGATATTTGTAATGTGAG  150

seq1  GCGCAGGTCAGTGGTAGAGCATGGCCAGACCTGCGTGAAGCCTCTGGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCAGGTCAGTGGTAGAGCATGGCCAGACCTGCGTGAAGCCTCTGGTTC  200

seq1  CTCCAAAGCCCACAGCACTCCACTGATGCTTTGCTCTGCTCCCGTTTACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAAGCCCACAGCACTCCACTGATGCTTTGCTCTGCTCCCGTTTACC  250

seq1  TTTGTACCGCTTGTGCTAACCAGACTCTGGCCTGGCAGAGCAGCTGTTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTACCGCTTGTGCTAACCAGACTCTGGCCTGGCAGAGCAGCTGTTAC  300

seq1  TATGGCGGTTTTTTGCTAGGGTCTTGCAGGGTGCTATAGTTAAGGTGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCGGTTTTTTGCTAGGGTCTTGCAGGGTGCTATAGTTAAGGTGTTT  350

seq1  TTGCATTCATCTCAGGTCTGCAGTTTAGTGGAGCTTTTAGCCTTGGGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTCATCTCAGGTCTGCAGTTTAGTGGAGCTTTTAGCCTTGGGCAC  400

seq1  AATTCAACCCTGACCTCATTTAATTTATTTGTGAAATGGAGATGTTAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAACCCTGACCTCATTTAATTTATTTGTGAAATGGAGATGTTAGTT  450

seq1  TAGACACATCTAAGTGGTTCAGTACTCAAGAGTTAAAATCAACAATTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACACATCTAAGTGGTTCAGTACTCAAGAGTTAAAATCAACAATTATT  500

seq1  TTCTACATTTGCAGTGCTCAGAAAAGTTCTAGAATAAGTGAAATATTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACATTTGCAGTGCTCAGAAAAGTTCTAGAATAAGTGAAATATTGTT  550

seq1  AATATTTAGGATCTTTTCATAAGCAAGTTATCAATTTGTCTCTCTGTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTAGGATCTTTTCATAAGCAAGTTATCAATTTGTCTCTCTGTGTG  600

seq1  TATTCTGAACTCATTGTGTTTCCTCATGCTACAAACTGATGATGAGCAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTGAACTCATTGTGTTTCCTCATGCTACAAACTGATGATGAGCAAG  650

seq1  AATACTACATTCAAACGGCTTACCAGTTGACGGGGACTTTAGAGTTTAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTACATTCAAACGGCTTACCAGTTGACGGGGACTTTAGAGTTTAGT  700

seq1  AAGAAACTGTATGAAAGTTATAGTAAGAATGGCAGAAAGTGGATATCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACTGTATGAAAGTTATAGTAAGAATGGCAGAAAGTGGATATCTGA  750

seq1  GTTACCTAAAATGTCAAGGAAGGTGTCTGGAGGAGGAGGAGGGGGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCTAAAATGTCAAGGAAGGTGTCTGGAGGAGGAGGAGGGGGA  796