BAC Information

Click to search

BAC

Clone NameB6Ng01-021E08
Chromosome3 (Build37)10 (Build37)
Map Location 118,855,656 - 118,855,816104,054,176 - 104,054,698
singlet/doubletsingletsinglet
Overlap geneDpyd
Upstream genenone
Downstream geneLOC100043275, LOC100043278, Ptbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021E08.bB6Ng01-021E08.g
ACCDH853823DH853824
length275941
definitionDH853823|Mus musculus domesticus DNA, BAC clone: B6Ng01-021E08, 5' end.DH853824|Mus musculus domesticus DNA, BAC clone: B6Ng01-021E08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(118,855,656 - 118,855,816)(104,054,176 - 104,054,698)
sequence
tttacacaaacatgagatagatttttggtatacgaattacaatgccatat
cctgactcaaacaagaaatgagggtagagaaatcagcattcaaataacag
tttacaaaaatattatgcctctttttctttatgtatatgtatacacacac
acacatatatatatatgtgtgtgtgtgtgtgtatatatgtatgtatggat
agaggtcatatatttttgaataatgtgttttgtgcggtgttttcttaccc
ctttttttgtgtgtgtgtgtgtata
gaattccacttaaaaccagagacactgaaacctatagaggagaaagtagt
gaaaagcctcaagatatgggtacaggggaaaaattcctgaatagaatagc
aatggcttgtgctgtaagatcgagaatcaacaaatgggacctcataaaat
tacaaagcttctgcaaggcaaaagacaccatcaataagacaaaaaggcca
ccaacagattgggaaaggatctttacctatcctaaatcagatagaggact
aatatccaatatatataaaaaactcaagaaggtggactccagaaaatcaa
atgacccgattaaaaaatggggctcagagctaaaaaaaagaattctcacc
tgaggaataccaaatggctgagaagcacctgaaaaaaatgttcaacatcc
ttaatcatcagggaaattcaaaacaaccctgagattccacctcacaccag
tcagaatggctaagataaaaaaattcaggtgacaggagatgctggcgagg
atgtagagaaagaagaacactcctccattgttggtgggattgcaagcttg
tacaaccactctggaaatcagtctggcgcttcctcagaaaatttgacata
gcactacctgaggatcccacaatacctctcctgggcatatatccagaaga
tgttccaaccagtaagaaggacacatgctccactatgttcataacagcct
tatttataatagccagaagctggaaagaacccagatgcccctcaacagag
gaatggatacagaaaaagtggtacatttacacaatggagtactactcagc
tattaaaaagaatgaatttatgaaattcctagccaaatggatggacctgg
agggcatcatcctgagtgagtaacacaatcacaaaggaactcacacatat
gtactcactgataagtggatattagccagaaacttagaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_118855656_118855816
seq2: B6Ng01-021E08.b_181_326

seq1  TATGCATATGTATCTGACACACACACACACACATATATACATATATATGT  50
      |||| ||||||||       ||||||||||||||||||| |||| | || 
seq2  TATGTATATGTAT-------ACACACACACACATATATATATATGTGTG-  42

seq1  ATATCATATATATGTATACATATTTACATATATATATATATGTCAGACAT  100
            | | | ||| || |||| |  || |||  ||| | |||| | ||
seq2  ------TGTGTGTGTGTATATATGT--ATGTATGGATAGAGGTCATATAT  84

seq1  ATAT-----ATGTGTGTGTGTGTGTGTATATATATACATATATATGTGTG  145
       | |     |||||| | |||| | || | |   |||   | | | ||||
seq2  TTTTGAATAATGTGT-TTTGTGCG-GTGTTTTCTTACCCCTTTTTTTGTG  132

seq1  TGTGTGTGTGTGTATA  161
      ||||||||||| ||  
seq2  TGTGTGTGTGTATA--  146

seq1: chr10_104054176_104054698
seq2: B6Ng01-021E08.g_70_589 (reverse)

seq1  AGGAGTGTTCCTCTTTCTCCACATCCTCGCCAGCATCTGCTGTCACCTGA  50
      |||||||||| |||||||| |||||||||||||||||| |||||||||||
seq2  AGGAGTGTTCTTCTTTCTCTACATCCTCGCCAGCATCTCCTGTCACCTGA  50

seq1  A-TTTTTGATCTTAGCCATTCTGACTGGTGTGAGGTGGAATCTCAGGGTT  99
      | ||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTATCTTAGCCATTCTGACTGGTGTGAGGTGGAATCTCAGGGTT  100

seq1  GTTTTGATTTGCATTTCCCTGATGATTAAGGATGTTGAACA-TTTTTTCA  148
      |||||||     ||||||||||||||||||||||||||||| ||||||||
seq2  GTTTTGA-----ATTTCCCTGATGATTAAGGATGTTGAACATTTTTTTCA  145

seq1  GGTGCTTCTCTGCCATTCGGTATTCCTCAGGTGAGAATTC-TTTGTTCAG  197
      |||||||||| |||||| |||||||||||||||||||||| ||| || ||
seq2  GGTGCTTCTCAGCCATTTGGTATTCCTCAGGTGAGAATTCTTTTTTTTAG  195

seq1  TTCTGAGCCCCATTTTTTAATAGGGTTATTTGATTTTCTGAAGTCCACCT  247
       |||||||||||||||||||| |||| ||||||||||||| |||||||||
seq2  CTCTGAGCCCCATTTTTTAATCGGGTCATTTGATTTTCTGGAGTCCACCT  245

seq1  TCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGAATTAGGA  297
      ||||||||| ||||||||| |||||||||||||| |||||||| ||||||
seq2  TCTTGAGTTTTTTATATATATTGGATATTAGTCCTCTATCTGATTTAGGA  295

seq1  TAGGTAAAGATCCTTTCTCAATCTGTTGGTGGTCTTTTTGTCTTATTGAC  347
      ||||||||||||||||| |||||||||||||| |||||||||||||||| 
seq2  TAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGAT  345

seq1  GGTGTCTTTTGCCTTGCAGAAGCTTTGCAATTTTATGAGGTCCCATTTAT  397
      ||||||||||||||||||||||||||| |||||||||||||||||||| |
seq2  GGTGTCTTTTGCCTTGCAGAAGCTTTGTAATTTTATGAGGTCCCATTTGT  395

seq1  CAACTCTCTATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAATTTT  447
        | |||| ||||||||||||||||||||||| |||||||||||||||||
seq2  TGATTCTCGATCTTACAGCACAAGCCATTGCTATTCTATTCAGGAATTTT  445

seq1  TCCCCTGTACCCATATCTTCGAGGCTTTTCCCTACTTTTTCCTCTATAAG  497
      ||||||||||||||||||| |||||||||| ||||||| ||||||||| |
seq2  TCCCCTGTACCCATATCTT-GAGGCTTTTCACTACTTTCTCCTCTATAGG  494

seq1  TTTCAGTGTCTCTGGTTTTATGTGGA  523
      |||||||||||||||||||| |||||
seq2  TTTCAGTGTCTCTGGTTTTAAGTGGA  520