BAC Information

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BAC

Clone NameB6Ng01-021H19
Chromosome3 (Build37)
Map Location 97,980,766 - 98,125,371
singlet/doubletdoublet
Overlap geneLOC622561, Reg4, Hmgcs2, Phgdh
Upstream geneBcl9, Olfr1402, Chd1l, Fmo5, Prkab2, Pde4dip, Sec22b, EG433632, LOC100042975, Notch2, Adam30
Downstream geneZfp697, LOC100043461, Hsd3b4, LOC100043456, EG545555, LOC676433, Hsd3b5, LOC668543, Hsd3b2, Hsd3b3, Hsd3b6, LOC545556, Hsd3b1, Hao3, LOC668557, Wars2, Tbx15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021H19.bB6Ng01-021H19.g
ACCDH853977DH853978
length913849
definitionDH853977|Mus musculus domesticus DNA, BAC clone: B6Ng01-021H19, 5' end.DH853978|Mus musculus domesticus DNA, BAC clone: B6Ng01-021H19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,124,460 - 98,125,371)(97,980,766 - 97,981,624)
sequence
gaattcagttaggtttcgtgtggcaccagttactgatggtgcagttactg
ataatgatgctattgatattaagatgcctctgccttctctcacttctgac
cagactgtaggctatgaccccatcatctctcctgaagtcgccgcctcctt
tggtgttcagcagctgccgctggaggagatctggcctctctgtgacttta
taactgtccataccccactcctgccctctaccacaggtaggctctcagtg
tgggttttctgcagacatcatcaagcaggtgtagggagggagctgcctgg
ggcctgctgagcatgatgatactttgtcacaagtccttgcctcagatgga
ggaggggtgagctctctggaaaagccaggtgtctaaatagactgaggtag
tacaactggcatcccgggtagaggcttcatgggaccctgcagggcatttt
gttggaccaccaagcaccatttcctaaacttcttgactctaacccacatc
tagtacaaggtctattatcccagagcatctaggaagacagaagtgagaac
aaggtagctatccaggagaaagaggcctttggggagatgtgagttatggg
acctgttaagtgagagggtcaagagccatcataatagtctcctctttctt
ccaggcttgctgaatgacagcacctttgctcagtgcaagaaaggtgtgcg
agtagtgaactgtgctcgaggaggcattgtggatgaaggtgccctgcttg
cgtgccctgcagtctggtcagtgtgctggggctgcactggatgtgtttac
agaagtaagtgcttgcaccttctgtgtcggggtcagagggtaaaggtgag
ggggagcacaaagtccttgggcaatatattgcgccatctttgattcccaa
gagctcactgtgt
gaattctgtacgtgctttgatcatagtcacccctcccagagttcctccta
gattctcccttcccttagttcctacccacttaacttcctgtcttttctct
ctcttttttatcctcgttcatgacatccagcatgtgctgggatggctaaa
ggtttttttttaatcatttataatctttctgttgaagtatttataatgtt
tatgagacacttggatgtagtagtgttgagtgtgtagttcagaagagaat
tactcagacccagagccctgggtgcctgctctaagttctgtattaatgag
tagaattttaatggggacagcagccacagctatctgacactaccgctaag
cacctggagtactaaccaattaataacagtagccccttgggtttcaaagc
tgttggagaaagctagagagatggcttggtgattaagaacatgtattgct
cttccaaaggatctgaatttgattcccagcacctatatcaggtggttcac
aattgccagtaactgaagttccaggggtatttggcctctgtacacacaca
cacacacacacacacacacacacacacacacacacacacatttaaaatag
tattaaattaaaacaacgtagaagagtaaaaaaagaaggatagtatgaaa
tatacttggattttgttcatatgattagcagtgaagtgggtaaggttaag
gattaatcatagataccttgcgggaaaaaaattaaaatcaggtaggtaag
ttgctaaggggagagtaggatactgtttggtctgcatatcttatttagag
acttagactgtgggattttctggtttattagcaataggagaggagatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_98124460_98125371
seq2: B6Ng01-021H19.b_44_956 (reverse)

seq1  ACACAGTGAGCTCTTGGGCTTC-AAGATGGCGCACTGTCTTGCCCAAGGC  49
      ||||||||||||||||||  || ||||||||||| | | |||||||||| 
seq2  ACACAGTGAGCTCTTGGGAATCAAAGATGGCGCAATATATTGCCCAAGGA  50

seq1  CTTTGTGCTCCCCCCTCACCTTTACCCTCTGACCCCGACACAGAGGCTGC  99
      ||||||||| |||||||||||||||||||||||||||||||||| | |||
seq2  CTTTGTGCT-CCCCCTCACCTTTACCCTCTGACCCCGACACAGAAGGTGC  99

seq1  AAGCACTTACTTCTGTAAACACATCCAGTGCAGCCCCAGCACACTGACCA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTTACTTCTGTAAACACATCCAGTGCAGCCCCAGCACACTGACCA  149

seq1  GACTGCAGGGCACGC-AGCAGGGCACCTTCATCCACAATGCCTCCTCGAG  198
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GACTGCAGGGCACGCAAGCAGGGCACCTTCATCCACAATGCCTCCTCGAG  199

seq1  CACAGTTCACTACTCGCACACCTTTCTTGCACTGAGCAAAGGTGCTGTCA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTTCACTACTCGCACACCTTTCTTGCACTGAGCAAAGGTGCTGTCA  249

seq1  TTCAGCAAGCCTGGAAGAAAGAGGAGACTATTATGATGGCTCTTGACCCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCAAGCCTGGAAGAAAGAGGAGACTATTATGATGGCTCTTGACCCT  299

seq1  CTCACTTAACAGGTCCCATAACTCACATCTCCCCAAAGGCCTCTTTCTCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTTAACAGGTCCCATAACTCACATCTCCCCAAAGGCCTCTTTCTCC  349

seq1  TGGATAGCTACCTTGTTCTCACTTCTGTCTTCCTAGATGCTCTGGGATAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAGCTACCTTGTTCTCACTTCTGTCTTCCTAGATGCTCTGGGATAA  399

seq1  TAGACCTTGTACTAGATGTGGGTTAGAGTCAAGAAGTTTAGGAAATGGTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCTTGTACTAGATGTGGGTTAGAGTCAAGAAGTTTAGGAAATGGTG  449

seq1  CTTGGTGGTCCAACAAAATGCCCTGCAGGGTCCCATGAAGCCTCTACCCG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTGGTCCAACAAAATGCCCTGCAGGGTCCCATGAAGCCTCTACCCG  499

seq1  GGATGCCAGTTGTACTACCTCAGTCTATTTAGACACCTGGCTTTTCCAGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCCAGTTGTACTACCTCAGTCTATTTAGACACCTGGCTTTTCCAGA  549

seq1  GAGCTCACCCCTCCTCCATCTGAGGCAAGGACTTGTGACAAAGTATCATC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCACCCCTCCTCCATCTGAGGCAAGGACTTGTGACAAAGTATCATC  599

seq1  ATGCTCAGCAGGCCCCAGGCAGCTCCCTCCCTACACCTGCTTGATGATGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCAGCAGGCCCCAGGCAGCTCCCTCCCTACACCTGCTTGATGATGT  649

seq1  CTGCAGAAAACCCACACTGAGAGCCTACCTGTGGTAGAGGGCAGGAGTGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGAAAACCCACACTGAGAGCCTACCTGTGGTAGAGGGCAGGAGTGG  699

seq1  GGTATGGACAGTTATAAAGTCACAGAGAGGCCAGATCTCCTCCAGCGGCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGGACAGTTATAAAGTCACAGAGAGGCCAGATCTCCTCCAGCGGCA  749

seq1  GCTGCTGAACACCAAAGGAGGCGGCGACTTCAGGAGAGATGATGGGGTCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGAACACCAAAGGAGGCGGCGACTTCAGGAGAGATGATGGGGTCA  799

seq1  TAGCCTACAGTCTGGTCAGAAGTGAGAGAAGGCAGAGGCATCTTAATATC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTACAGTCTGGTCAGAAGTGAGAGAAGGCAGAGGCATCTTAATATC  849

seq1  AATAGCATCATTATCAGTAACTGCACCATCAGTAACTGGTGCCACACGAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCATCATTATCAGTAACTGCACCATCAGTAACTGGTGCCACACGAA  899

seq1  ACCTAACTGAATTC  912
      ||||||||||||||
seq2  ACCTAACTGAATTC  913

seq1: chr3_97980766_97981624
seq2: B6Ng01-021H19.g_70_918

seq1  GAATTCTGTACGTGCTTTGATCATAGTCACCCCTCCCAGAGTTCCTCCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTACGTGCTTTGATCATAGTCACCCCTCCCAGAGTTCCTCCTA  50

seq1  GATTCTCCCTTCCCTTAGTTCCTACCCACTTAACTTCCTGTCTTTTCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTCCCTTCCCTTAGTTCCTACCCACTTAACTTCCTGTCTTTTCTCT  100

seq1  CTCTTTTTTATCCTCGTTCATGACATCCAGCATGTGCTGGGATGGCTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTTTATCCTCGTTCATGACATCCAGCATGTGCTGGGATGGCTAAA  150

seq1  GGTTTTTTTTTAATCATTTATAATCTTTCTGTTGAAGTATTTATAATGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTTTTTAATCATTTATAATCTTTCTGTTGAAGTATTTATAATGTT  200

seq1  TATGAGACACTTGGATGTAGTAGTGTTGAGTGTGTAGTTCAGAAGAGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGACACTTGGATGTAGTAGTGTTGAGTGTGTAGTTCAGAAGAGAAT  250

seq1  TACTCAGACCCAGAGCCCTGGGTGCCTGCTCTAAGTTCTGTATTAATGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAGACCCAGAGCCCTGGGTGCCTGCTCTAAGTTCTGTATTAATGAG  300

seq1  TAGAATTTTAATGGGGACAGCAGCCACAGCTATCTGACACTACCGCTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATTTTAATGGGGACAGCAGCCACAGCTATCTGACACTACCGCTAAG  350

seq1  CACCTGGAGTACTAACCAATTAATAACAGTAGCCCCTTGGGTTTCAAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGGAGTACTAACCAATTAATAACAGTAGCCCCTTGGGTTTCAAAGC  400

seq1  TGTTGGAGAAAGCTAGAGAGATGGCTTGGTGATTAAGAACATGTATTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGAGAAAGCTAGAGAGATGGCTTGGTGATTAAGAACATGTATTGCT  450

seq1  CTTCCAAAGGATCTGAATTTGATTCCCAGCACCTATATCAGGTGGTTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAAAGGATCTGAATTTGATTCCCAGCACCTATATCAGGTGGTTCAC  500

seq1  AATTGCCAGTAACTGAAGTTCCAGGGGTATTTGGCCTCTGTACACACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCCAGTAACTGAAGTTCCAGGGGTATTTGGCCTCTGTACACACACA  550

seq1  CACACACACACACACACACACACACACACACACACACACATTTAAAATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACACATTTAAAATAG  600

seq1  TAAAAAATTAAAACAACGTAGAAGAGTAAAAAAAGAAGGATAGTATGAAA  650
      ||  ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAATTAAAACAACGTAGAAGAGTAAAAAAAGAAGGATAGTATGAAA  650

seq1  TATACTTGGATTTTAGTTCATAGGATTAGCAGTGAAGTGGGTAAGGTTAA  700
      |||||||||||||| ||||||| |||||||||||||||||||||||||||
seq2  TATACTTGGATTTT-GTTCATATGATTAGCAGTGAAGTGGGTAAGGTTAA  699

seq1  GGATTAATCATTAGATAACCTTGCGGGAAAAAAATTAAAAATCAAGGTAG  750
      |||||||||| ||||| ||||||||||||||||||| |||||| ||||||
seq2  GGATTAATCA-TAGAT-ACCTTGCGGGAAAAAAATT-AAAATC-AGGTAG  745

seq1  GTAAAGTTGCTAAGGGGAGAGGTAGGATACTGTTCGGGTCTGCAGATCTT  800
      || ||||||||||||||||| |||||||||||||  |||||||| |||||
seq2  GT-AAGTTGCTAAGGGGAGA-GTAGGATACTGTT-TGGTCTGCATATCTT  792

seq1  AGTTAGAGACTTAGAGCTGTGGGAGTTTCTGTTTAAGAAGCAAAAGGAGG  850
      | ||||||||||||| |||||||| |||||| || |  ||||| |||| |
seq2  ATTTAGAGACTTAGA-CTGTGGGATTTTCTGGTTTATTAGCAATAGGA-G  840

seq1  AGGAGATGA  859
      |||||||||
seq2  AGGAGATGA  849