BAC Information

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BAC

Clone NameB6Ng01-021L04
Chromosome3 (Build37)
Map Location 41,059,033 - 41,059,659
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021L04.bB6Ng01-021L04.g
ACCDH854129DH854130
length1,034586
definitionDH854129|Mus musculus domesticus DNA, BAC clone: B6Ng01-021L04, 5' end.DH854130|Mus musculus domesticus DNA, BAC clone: B6Ng01-021L04, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgagccccatttttaatggggttatttgattt
tatggcgtccaccttcttgagttctttatatatattctatgttagtcccc
tatctgatttaggataggtaaagatcctttcccaatctgttggtggcctt
tttgtcttattgaaggtgtcttttgccttacagaagctttgcaattttat
gaggtcccatttgttgattctcaatcttacagcacaagccattgctgttc
tattcaggaatttttccctgtgcccatattttcgaggcttttccctactt
tctcctctataagtttcagtgtctctggttttatgtggagtcccttgatc
cacttagatttgaccttagtacaaggagataggaatggaacaatttgcat
tcttctacgtgttaaccaccagttgtaccagcaccatttgttgaaaatgc
tgtcttttttccactggatggttttagctcccttgtcaaagatcaagtga
ccataggtgtgtgggatcatttctgggtctttgattctattccattggtc
tacttgtttgacattataccagtaccttgcagtttttgtcacaattgctc
tgtagtacagctttaggtcaggcatggtgattccaccagaggttctttta
tccttgagaagagtttttgctatcctaggtttattgttattttcagatgc
attttgcagattgcccttttctaattcattgaagaattgagttggaattt
tgatggggattgcaatgaatctatagattgttttaggcaagatagccatt
tttactatattcatcctgctaatccatgagaaagggaaatcttttcatct
tctgagctctttatttctttctcagagactgaagtcttatcatgcgatct
ttacttcctattgagtctgccaaggtatttttatattgtgactattgaga
aggtgtggtccctattttctcgcccgttatcttttgtgaaagaaaggcat
gacttgttggttaattattccagctaccttcacg
gaattctttgtttagctctggaccccattttttaatggagatatttgatt
ttctggagtccagcttcttaagctctttgtatatatgggatattagtccc
ctatctgatttatgataggtaaagatcttttcccaatctgttggtggcct
ttttgtcttattgatggtgtcttttgccttatagaatctttgcaatttta
tcaggtcccatttgtctattctcaatcatacagcacaagccattgctgtt
cttttcaggaattttcccctatgcccatatctttgaggcttttccccact
ttctcctctataagtttcattgtctcttgttttttgtggagttccttgat
ctactaggatttttttattattattatatgtaagtacactgtagctgact
tcagacaatccagaagagggtgtcagatcttgttacagatggttgtgagc
caccatgtggttgctgggatttgaactccagaccttcggaagagcagtcg
ggtgctcttacccactgagccagctcaccagcccgatctactaggattta
accttagtacaaggagataggaattgatgaatttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059033_41059659
seq2: B6Ng01-021L04.g_148_654 (reverse)

seq1  GCAAATTCATCTGGAATAACAAAAAACCTAGGATAGCAAAAACTCTTCTC  50
      |||||||||||           ||  |||   ||  |     ||  |   
seq2  GCAAATTCATC-----------AATTCCT---ATCTC-----CTTGTACT  31

seq1  AAGGATAACAGAACCTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTA  100
      |||| ||    || | || || | |||    ||  ||| ||   |||   
seq2  AAGGTTA----AATC-CTAGTAG-ATCGGGCTG-GTGAGCT--GGCT---  69

seq1  CTACAGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGTGACAGAC  150
         ||| |       | ||| |   |||    |||| | |          
seq2  ---CAGTG-------GGTAAGA---GCACCCGACTGCTCT----------  96

seq1  AAGCAGACCAATGGAATAGAATTGAAGACTCAGAAACGAATCCACACACC  200
             || | ||  | || || ||  | ||| |||         ||| 
seq2  ------TCCGAAGGTCTGGAGTTCAAATCCCAGCAAC---------CAC-  130

seq1  TATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAAAA  250
       |||||  ||                    | |||||||   || || ||
seq2  -ATGGTGGCT-------------------CACAACCATC---TGTAACAA  157

seq1  ----AGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTTGTTATCA  296
           |||| | | ||            ||||    | ||  ||   |||
seq2  GATCTGACACCCTCTT------------CTGG----ATTGTCTGAAGTCA  191

seq1  TGTAGAAGAATGCGAATTGATCCACTCCTATCTCCTTGTACTAAGGTCAA  346
        || |              |  |||   || |  |  || |||    ||
seq2  GCTACA-------------GTGTACTTACATATAATAATAATAA--AAAA  226

seq1  ATCTAAGTGGATCAAGGAACGCCACATAAAACCAGAGACACTGAAACTTA  396
      |||  ||| ||||||||||| ||||| ||||| ||||||| |||||||||
seq2  ATCCTAGTAGATCAAGGAACTCCACAAAAAACAAGAGACAATGAAACTTA  276

seq1  TAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGGGGAAAAA  446
      |||||||||||||||||||||||||  ||||||||| || ||||| ||||
seq2  TAGAGGAGAAAGTGGGGAAAAGCCTCAAAGATATGGGCATAGGGG-AAAA  325

seq1  TTCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAATAGACAA  496
      |||||| | |||||||||||||||||||||||| ||||||||||||||||
seq2  TTCCTGAAAAGAACAGCAATGGCTTGTGCTGTATGATTGAGAATAGACAA  375

seq1  ATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACACCGTCA  546
      ||||||||| || ||| ||||||| ||||  ||||||||||||||| |||
seq2  ATGGGACCTGATAAAATTGCAAAGATTCTATAAGGCAAAAGACACCATCA  425

seq1  ATAAGACAAAAAGG-CACCAACAGATTGGGAAAGGATCTTTACCTATCCT  595
      |||||||||||||| |||||||||||||||||| |||||||||||||| |
seq2  ATAAGACAAAAAGGCCACCAACAGATTGGGAAAAGATCTTTACCTATCAT  475

seq1  AAATCAGATAGGGGACTAATATCCAATATATA  627
      |||||||||||||||||||||||| |||||||
seq2  AAATCAGATAGGGGACTAATATCCCATATATA  507