BAC Information

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BAC

Clone NameB6Ng01-021M17
Chromosome3 (Build37)
Map Location 130,439,886 - 130,573,228
singlet/doubletdoublet
Overlap geneLOC546811
Upstream geneEgf, Gm421, Rrh, Nola1, Cfi, Pla2g12a, Casp6, Ccdc109b, Sec24b, EG668844, EG668845, Col25a1, Agxt2l1, 2310008M10Rik, Rpl34
Downstream geneLOC545568, Lef1, 6720418B01Rik, Hadh, Cyp2u1, Sgms2, LOC100043443, Papss1, Olfr375-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021M17.bB6Ng01-021M17.g
ACCDH854201DH854202
length1,069965
definitionDH854201|Mus musculus domesticus DNA, BAC clone: B6Ng01-021M17, 5' end.DH854202|Mus musculus domesticus DNA, BAC clone: B6Ng01-021M17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(130,439,886 - 130,440,972)(130,572,237 - 130,573,228)
sequence
gaattccagccttagggttgttttctggaaagggattattgctttctgtt
ctctctggctgcccagcttcacacttcatgatcacacctcgttacaaatg
tttctgtttcatttccttgtggcatttttgaggtgtctaaagaaagcccc
atagacttcaccaagcaaatagtgtagtcacagaaatggtgtaaggagga
aaagggttagtttatcggaggcttgtttcctgaagttacagttctcctgg
aaacatagacacttgcctttgggaacagcaaaacctgcctttgcctagtg
tctcatgtaaacaaaggcagttgttcccaggaggcaggcttggtgagttg
atgcattagaagatgctagtgtattgatttccattgttgtttgttcaata
gtcatcctgttttgttacaaagggcaaataattttgcagaatgctcttcc
acccccacattaagaagtacataatatcatgtttgtgttgaaactttgtc
ttccgaaatgtcataacctcatcggaaagggaattaaaatcctgttattc
taatttacatctagccacaagataagtaaagttatcattgcaattctaat
taaatgggatgattgactaaggtagcacatcaaagaagagaagtgaatat
gataagtggaagacttattaattagtctgcgtggaagaaattccagggat
gtcaagctgagcctgctgcaaggagaaaaaaagcagccgagaaagcgctc
gtttctttgaagttaggaactgagatagtgatggaggtaattgcgcctga
ctggatccaataatgaagagctgtaaatcagacctcagaatcgaaggaag
attcaagtaacgactgcggctgtcccccctgctgcgagaaacagaatgtg
gagcgcgctaattgacccagcctattcccagtagtctctgtatatttatt
atttttattctgattatttacgtcctgggaaatattcctgacagcctgta
ggcgtgcctaagttatggaggatgaaaggtgggaccagattagcagatgg
agtcaccggctactggatt
gaattcactagaataatataaattcctcccctcaaatatttataaatggg
tagataacttcagacaacctgaacagatagcatgaggtctaggcttgtac
tttgtaaaataactccagcatccaacatgaccttgtgtaaatgaaattag
tgaggtgctctgggccccagtcccttcatcagtaaagggctgtaataact
cttgcctcatggctcttacgagaattaacaagttaacatttgttcagttc
tttgaggtccttggatgaaaggtgtcttataaatactaagcaccattatt
aagatttaatgaccatatctgtacttatggtacccagtgtcctaagaaac
aaaagctgttcatggccacagagaagcactaaccgttggctcacgggtac
ctatgaagatgcaagctagaattaccgagacaccattgtgttttattatc
agctttaaagaaactgcagttgttcaagctaatatttctctatagattca
agggtagtttttttgcaggtgttaaaacattttcatctcagtgttaagat
tttgaaatctttacattatctacttactcttagataactatattgtcata
ttggtaacatgggctaactgtggtcattgtgccttttgcacacagcggct
tttatccttaacatgagaacaatgtaaagcaggtccagccatctctccgc
tccctccctcctcctttctatgctcatggcccagtgcctccacaacctga
ttcactctttctcccactccacaaggaaagctgacattcatgggagagtt
gggaagacaaaaaagttcttcttgtccccgatgacaacatttagaaaaaa
gaagaaaaaagattcagaaagaaccatgacagctcgactgtccctctctg
tcatctgtcaaggtggaaagccgtgcttcaggaaagacaaatcgcccaca
agaaacacgttctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_130439886_130440972
seq2: B6Ng01-021M17.b_45_1113

seq1  GAATTCCAGCCTTAGGGTTGTTTTCTGGAAAGGGATTATTGCTTTCTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCCTTAGGGTTGTTTTCTGGAAAGGGATTATTGCTTTCTGTT  50

seq1  CTCTCTGGCTGCCCAGCTTCACACTTCATGATCACACCTCGTTACAAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGGCTGCCCAGCTTCACACTTCATGATCACACCTCGTTACAAATG  100

seq1  TTTCTGTTTCATTTCCTTGTGGCATTTTTGAGGTGTCTAAAGAAAGCCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTTTCATTTCCTTGTGGCATTTTTGAGGTGTCTAAAGAAAGCCCC  150

seq1  ATAGACTTCACCAAGCAAATAGTGTAGTCACAGAAATGGTGTAAGGAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACTTCACCAAGCAAATAGTGTAGTCACAGAAATGGTGTAAGGAGGA  200

seq1  AAAGGGTTAGTTTATCGGAGGCTTGTTTCCTGAAGTTACAGTTCTCCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGTTAGTTTATCGGAGGCTTGTTTCCTGAAGTTACAGTTCTCCTGG  250

seq1  AAACATAGACACTTGCCTTTGGGAACAGCAAAACCTGCCTTTGCCTAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATAGACACTTGCCTTTGGGAACAGCAAAACCTGCCTTTGCCTAGTG  300

seq1  TCTCATGTAAACAAAGGCAGTTGTTCCCAGGAGGCAGGCTTGGTGAGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATGTAAACAAAGGCAGTTGTTCCCAGGAGGCAGGCTTGGTGAGTTG  350

seq1  ATGCATTAGAAGATGCTAGTGTATTGATTTCCATTGTTGTTTGTTCAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTAGAAGATGCTAGTGTATTGATTTCCATTGTTGTTTGTTCAATA  400

seq1  GTCATCCTGTTTTGTTACAAAGGGCAAATAATTTTGCAGAATGCTCTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCCTGTTTTGTTACAAAGGGCAAATAATTTTGCAGAATGCTCTTCC  450

seq1  ACCCCCACATTAAGAAGTACATAATATCATGTTTGTGTTGAAACTTTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCACATTAAGAAGTACATAATATCATGTTTGTGTTGAAACTTTGTC  500

seq1  TTCCGAAATGTCATAACCTCATCGGAAAGGGAATTAAAATCCTGTTATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGAAATGTCATAACCTCATCGGAAAGGGAATTAAAATCCTGTTATTC  550

seq1  TAATTTACATCTAGCCACAAGATAAGTAAAGTTATCATTGCAATTCTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTACATCTAGCCACAAGATAAGTAAAGTTATCATTGCAATTCTAAT  600

seq1  TAAATGGGATGATTGACTAAGGTAGCACATCAAAGAAGAGAAGTGAATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGGGATGATTGACTAAGGTAGCACATCAAAGAAGAGAAGTGAATAT  650

seq1  GATAAGTGGAAGACTTATTAATTAGTCTGCGTGGAAGAAATTCCAGGGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGTGGAAGACTTATTAATTAGTCTGCGTGGAAGAAATTCCAGGGAT  700

seq1  GTCAAGCTGAGCCTGCTGCAAGGAGAAAAAAAGCAGCCGAGAAAGCGCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGCTGAGCCTGCTGCAAGGAGAAAAAAAGCAGCCGAGAAAGCGCTC  750

seq1  GTTTCTTTGAAGTTAGGAACTGAGATAGTGATGGAGGTAATTGCGCCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTTGAAGTTAGGAACTGAGATAGTGATGGAGGTAATTGCGCCTGA  800

seq1  CTGGATCCAATAATGAAGAGCTGTAAATCAGACCTCAGAATCGAAGGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTGGATCCAATAATGAAGAGCTGTAAATCAGACCTCAGAATCGAAGG-AA  849

seq1  GATTCAAGTAACGACTGCGGCTGTCCCCCCTGCTGCGAAGAAACAGAATG  900
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GATTCAAGTAACGACTGCGGCTGTCCCCCCTGCTGCG-AGAAACAGAATG  898

seq1  TGGAGCGCGCTAATTGACCCAGCCTATTTCCCAGTAGTTCTCTGTTATTA  950
      |||||||||||||||||||||||||| |||||||||| |||||||   ||
seq2  TGGAGCGCGCTAATTGACCCAGCCTA-TTCCCAGTAG-TCTCTGT--ATA  944

seq1  TTTATTAATTTTTAATTTCTGAATTATTTACGTCCTGGGAAATTATTCCT  1000
      |||||| |||||||  ||||| |||||||||||||||||||| |||||||
seq2  TTTATT-ATTTTTA--TTCTG-ATTATTTACGTCCTGGGAAA-TATTCCT  989

seq1  GACAGCCTGTTAGGCGTGCCAAAGTTAATGGAGGATGAAAGGGTGGGTAC  1050
      ||||||||| |||||||||| ||||| ||||||||||||| |||||| ||
seq2  GACAGCCTG-TAGGCGTGCCTAAGTT-ATGGAGGATGAAA-GGTGGG-AC  1035

seq1  CAGAATTAGCAGGGATGGAGTCACCGGCTACTGGATT  1087
      ||| |||||||  ||||||||||||||||||||||||
seq2  CAG-ATTAGCA--GATGGAGTCACCGGCTACTGGATT  1069

seq1: chr3_130572237_130573228
seq2: B6Ng01-021M17.g_66_1030 (reverse)

seq1  TCAGAACCGTTGTTTCTCTGTTGGGCGATTTTCGTCTTTTCTCCTGAAGC  50
      |||||||   ||||||| || ||||||||||  |||||   |||||||||
seq2  TCAGAAC--GTGTTTCT-TG-TGGGCGATTT--GTCTT---TCCTGAAGC  41

seq1  ACGCGCCTCTCCACCCTGTGACAGATGACAGAGAGGTGACAGTTCTGAGC  100
      |  || || ||||||   |||||||||||||||||| ||||||   ||||
seq2  A--CGGCTTTCCACC--TTGACAGATGACAGAGAGG-GACAGT--CGAGC  84

seq1  TGGTCATGGTTCTCTTCTTGACATCTTTTTTTCTTCTTTTTTTCTAAATG  150
      | ||||||||||| ||| ||| ||| |||||||||| |||||||||||||
seq2  T-GTCATGGTTCT-TTC-TGA-ATC-TTTTTTCTTC-TTTTTTCTAAATG  128

seq1  TTTGTCATCGGAGATCAAAGAAGAACTTTTTTTGTCTTCCCAACTCTCCC  200
       |||||||||| ||   ||||||||| |||||||||||||||||||||||
seq2  -TTGTCATCGGGGA--CAAGAAGAAC-TTTTTTGTCTTCCCAACTCTCCC  174

seq1  ATGAATGTCAGCTTTCCTTGTGGAGTGGGAGAAAGAGTGAATCAGGTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGTCAGCTTTCCTTGTGGAGTGGGAGAAAGAGTGAATCAGGTTGT  224

seq1  GGAGGCACTGGGCCATGAGCATTAGAAAGGAGGAGGGAGGGAGCGGAGAG  300
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GGAGGCACTGGGCCATGAGCA-TAGAAAGGAGGAGGGAGGGAGCGGAGAG  273

seq1  ATGGCTGGACCTGCTTTACATTGTTCTCATGTTAAGGATAAAAGCCGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTGGACCTGCTTTACATTGTTCTCATGTTAAGGATAAAAGCCGCTG  323

seq1  TGTGCAAAAGGCACAATGACCACAGTTAGCCCATGTTACCAATATGACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAAAAGGCACAATGACCACAGTTAGCCCATGTTACCAATATGACAA  373

seq1  TATAGTTATCTAAGAGTAAGTAGATAATGTAAAGATTTCAAAATCTTAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTTATCTAAGAGTAAGTAGATAATGTAAAGATTTCAAAATCTTAAC  423

seq1  ACTGAGATGAAAATGTTTTAACACCTGCAAAAAAACTACCCTTGAATCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGATGAAAATGTTTTAACACCTGCAAAAAAACTACCCTTGAATCTA  473

seq1  TAGAGAAATATTAGCTTGAACAACTGCAGTTTCTTTAAAGCTGATAATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAATATTAGCTTGAACAACTGCAGTTTCTTTAAAGCTGATAATAA  523

seq1  AACACAATGGTGTCTCGGTAATTCTAGCTTGCATCTTCATAGGTACCCGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAATGGTGTCTCGGTAATTCTAGCTTGCATCTTCATAGGTACCCGT  573

seq1  GAGCCAACGGTTAGTGCTTCTCTGTGGCCATGAACAGCTTTTGTTTCTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAACGGTTAGTGCTTCTCTGTGGCCATGAACAGCTTTTGTTTCTTA  623

seq1  GGACACTGGGTACCATAAGTACAGATATGGTCATTAAATCTTAATAATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACTGGGTACCATAAGTACAGATATGGTCATTAAATCTTAATAATGG  673

seq1  TGCTTAGTATTTATAAGACACCTTTCATCCAAGGACCTCAAAGAACTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAGTATTTATAAGACACCTTTCATCCAAGGACCTCAAAGAACTGAA  723

seq1  CAAATGTTAACTTGTTAATTCTCGTAAGAGCCATGAGGCAAGAGTTATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTTAACTTGTTAATTCTCGTAAGAGCCATGAGGCAAGAGTTATTA  773

seq1  CAGCCCTTTACTGATGAAGGGACTGGGGCCCAGAGCACCTCACTAATTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCTTTACTGATGAAGGGACTGGGGCCCAGAGCACCTCACTAATTTC  823

seq1  ATTTACACAAGGTCATGTTGGATGCTGGAGTTATTTTACAAAGTACAAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACACAAGGTCATGTTGGATGCTGGAGTTATTTTACAAAGTACAAGC  873

seq1  CTAGACCTCATGCTATCTGTTCAGGTTGTCTGAAGTTATCTACCCATTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACCTCATGCTATCTGTTCAGGTTGTCTGAAGTTATCTACCCATTTA  923

seq1  TAAATATTTGAGGGGAGGAATTTATATTATTCTAGTGAATTC  992
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATTTGAGGGGAGGAATTTATATTATTCTAGTGAATTC  965