BAC Information

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BAC

Clone NameB6Ng01-021O10
Chromosome3 (Build37)
Map Location 158,689,224 - 158,835,848
singlet/doubletdoublet
Overlap genenone
Upstream geneLrrc40, Lrrc7, LOC100041008, LOC668905
Downstream geneLOC668907, Depdc1a, Rpe65, Gpr177
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021O10.bB6Ng01-021O10.g
ACCDH854282DH854283
length9841,138
definitionDH854282|Mus musculus domesticus DNA, BAC clone: B6Ng01-021O10, 5' end.DH854283|Mus musculus domesticus DNA, BAC clone: B6Ng01-021O10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(158,835,236 - 158,835,848)(158,689,224 - 158,690,394)
sequence
gaattctctcagattctcccctcttgctacccatataacatcagctttct
ttatatgtcttccaaaactaacaaaatacagtaaaatgaaaacaagacaa
aaacactgaaccacaacaaaaggaaatacagtgcaaaatatagagtctat
ttgttttgtaaactactcctggctacaagacctgccctaaagtggttgat
acacccatgtcactccactggagaaaagtgatttcccactctcccagcag
gtagtgattctgatagtttcttggtaaggggtgggatgctgtggccacta
cttctccaaggtatgattttctcttgtttaatttttttcaaatcttgttg
gtgtttccatagtatctgaatgtttataaacaccctgttttgtctggaag
atgctgtttccttggagtcatctatcacctttgacttttacaatctttct
gtttccttttataaatagattcctgagctttgaaaggagagatttgatat
attcatttcatttaagaatgactatccccttccgctcgtctcgagccccg
ggctaccttgccagcagagtcttgcccaacacccgcaaaggcccacacgg
gactccccacaggatcctaagacctctggtgagtggaacacagcgcctgc
cccaatccaattgcgcggaacctgagactgcagtacatagggaagcaggc
tacccgggcctgatctggggcacaagtcccttccgctcgactcgagcccc
gggctaccttgccagcagagtcttgcccaacacccgcaagggccacacgg
gactccccacgggatcctaagacctctggtgagtggaacacagcgcctgc
cccaatccaattgcacggaacctgagactgcagtacatagggaagcaggt
acccgggcctgatctgggcacaagtccctctgctcgactcgagtcccggg
ctaccttgccagcagagtctgctcaacacccgca
gaattccatgtggatatacaatttgatatgactttctgagattactgata
ttaagatttgatataatactaggcttcaaatgctaagcctataataagac
ttccagctattattgatgtaggtagtttagagacaacactgaaaaaattc
ttatgaaattttaagaaatgtctcagcactgttgacctggtaactgtgta
gccttcttctccctctcacaatagtctatgatctccattccagagtacat
ggtccaagctctggtcattctcattacataaagtgaaacaggattcccta
aagatatttcagagtctgagtgatgggatgactcccccaccccaggttca
accatctaatcaggacaaacctaagtcaggatcagaactcaagtttagac
ataaggattaaagtgtctgaattgattgctttgctgcacaatcaagatga
ataattatagaaggaaaaaaagataaccagcttttgaaagtattaaagag
aagtaaaatgtctttctttaagatgatgaatatgggtaaaacatgaatat
ggtgaaagatttttggctgaatcacatcagatgattagagtgcttgttca
atgagtacctggtgtctaaattcttaccaaacttatccatagaaggagaa
ttgatatggtaagcacttagaagattgcttaatcagtaaagtgcatatca
tgtatgatttcatatttttccacattcaaaaactcaacagatgtcatgct
tttgtaccctactgctagagaagaggaaggcagagacaggaagatacctg
catatcattgccctgccactgtaactgaatcaatgagtttcaggtcattg
ggagaccttgactcaaaaaataaagaagctgggggaagacaacttttgcc
cttcctgtgaatgcaaatacactagctagcagagcccatggccacatatt
aacataaacacactcagaattcgttctagatactttaaatattaacttat
ttattatatttgtatatattatcaagcatctaggagtaaatcccccatca
tagtagcaaatttgagctctaataatagtatgcaattgatgagatcggtg
agtcccatgtctgtctatgccaccaatgctcattctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_158835236_158835848
seq2: B6Ng01-021O10.b_46_658 (reverse)

seq1  CCTGTGGGGAGTCCCGTGTGGGCCTTTGCGGGTGTTGGGCAAGACTCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGGGGAGTCCCGTGTGGGCCTTTGCGGGTGTTGGGCAAGACTCTGC  50

seq1  TGGCAAGGTAGCCCGGGGCTCGAGACGAGCGGAAGGGGATAGTCATTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAGGTAGCCCGGGGCTCGAGACGAGCGGAAGGGGATAGTCATTCTT  100

seq1  AAATGAAATGAATATATCAAATCTCTCCTTTCAAAGCTCAGGAATCTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAATGAATATATCAAATCTCTCCTTTCAAAGCTCAGGAATCTATT  150

seq1  TATAAAAGGAAACAGAAAGATTGTAAAAGTCAAAGGTGATAGATGACTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAGGAAACAGAAAGATTGTAAAAGTCAAAGGTGATAGATGACTCC  200

seq1  AAGGAAACAGCATCTTCCAGACAAAACAGGGTGTTTATAAACATTCAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAACAGCATCTTCCAGACAAAACAGGGTGTTTATAAACATTCAGAT  250

seq1  ACTATGGAAACACCAACAAGATTTGAAAAAAATTAAACAAGAGAAAATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGGAAACACCAACAAGATTTGAAAAAAATTAAACAAGAGAAAATCA  300

seq1  TACCTTGGAGAAGTAGTGGCCACAGCATCCCACCCCTTACCAAGAAACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTGGAGAAGTAGTGGCCACAGCATCCCACCCCTTACCAAGAAACTA  350

seq1  TCAGAATCACTACCTGCTGGGAGAGTGGGAAATCACTTTTCTCCAGTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATCACTACCTGCTGGGAGAGTGGGAAATCACTTTTCTCCAGTGGA  400

seq1  GTGACATGGGTGTATCAACCACTTTAGGGCAGGTCTTGTAGCCAGGAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACATGGGTGTATCAACCACTTTAGGGCAGGTCTTGTAGCCAGGAGTA  450

seq1  GTTTACAAAACAAATAGACTCTATATTTTGCACTGTATTTCCTTTTGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACAAAACAAATAGACTCTATATTTTGCACTGTATTTCCTTTTGTTG  500

seq1  TGGTTCAGTGTTTTTGTCTTGTTTTCATTTTACTGTATTTTGTTAGTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCAGTGTTTTTGTCTTGTTTTCATTTTACTGTATTTTGTTAGTTTT  550

seq1  GGAAGACATATAAAGAAAGCTGATGTTATATGGGTAGCAAGAGGGGAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGACATATAAAGAAAGCTGATGTTATATGGGTAGCAAGAGGGGAGAA  600

seq1  TCTGAGAGAATTC  613
      |||||||||||||
seq2  TCTGAGAGAATTC  613

seq1: chr3_158689224_158690394
seq2: B6Ng01-021O10.g_70_1207

seq1  GAATTCCATGTGGATATACAATTTGATATGACTTTCTGAGATTACTGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGTGGATATACAATTTGATATGACTTTCTGAGATTACTGATA  50

seq1  TTAAGATTTGATATAATACTAGGCTTCAAATGCTAAGCCTATAATAAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATTTGATATAATACTAGGCTTCAAATGCTAAGCCTATAATAAGAC  100

seq1  TTCCAGCTATTATTGATGTAGGTAGTTTAGAGACAACACTGAAAAAATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGCTATTATTGATGTAGGTAGTTTAGAGACAACACTGAAAAAATTC  150

seq1  TTATGAAATTTTAAGAAATGTCTCAGCACTGTTGACCTGGTAACTGTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAAATTTTAAGAAATGTCTCAGCACTGTTGACCTGGTAACTGTGTA  200

seq1  GCCTTCTTCTCCCTCTCACAATAGTCTATGATCTCCATTCCAGAGTACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCTTCTCCCTCTCACAATAGTCTATGATCTCCATTCCAGAGTACAT  250

seq1  GGTCCAAGCTCTGGTCATTCTCATTACATAAAGTGAAACAGGATTCCCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCAAGCTCTGGTCATTCTCATTACATAAAGTGAAACAGGATTCCCTA  300

seq1  AAGATATTTCAGAGTCTGAGTGATGGGATGACTCCCCCACCCCAGGTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATTTCAGAGTCTGAGTGATGGGATGACTCCCCCACCCCAGGTTCA  350

seq1  ACCATCTAATCAGGACAAACCTAAGTCAGGATCAGAACTCAAGTTTAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTAATCAGGACAAACCTAAGTCAGGATCAGAACTCAAGTTTAGAC  400

seq1  ATAAGGATTAAAGTGTCTGAATTGATTGCTTTGCTGCACAATCAAGATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGATTAAAGTGTCTGAATTGATTGCTTTGCTGCACAATCAAGATGA  450

seq1  ATAATTATAGAAGGAAAAAAAGATAACCAGCTTTTGAAAGTATTAAAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTATAGAAGGAAAAAAAGATAACCAGCTTTTGAAAGTATTAAAGAG  500

seq1  AAGTAAAATGTCTTTCTTTAAGATGATGAATATGGGTAAAACATGAATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAAATGTCTTTCTTTAAGATGATGAATATGGGTAAAACATGAATAT  550

seq1  GGTGAAAGATTTTTGGCTGAATCACATCAGATGATTAGAGTGCTTGTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAAGATTTTTGGCTGAATCACATCAGATGATTAGAGTGCTTGTTCA  600

seq1  ATGAGTACCTGGTGTCTAAATTCTTACCAAACTTATCCATAGAAGGAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTACCTGGTGTCTAAATTCTTACCAAACTTATCCATAGAAGGAGAA  650

seq1  TTGATATGGTAAGCACTTAGAAGATTGCTTAATCAGTAAAGTGCATATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATATGGTAAGCACTTAGAAGATTGCTTAATCAGTAAAGTGCATATCA  700

seq1  TGTATGATTTCATA-TTTTCCACATTCAAAAACTCAACAGATGTCATGCT  749
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGTATGATTTCATATTTTTCCACATTCAAAAACTCAACAGATGTCATGCT  750

seq1  TTTGTACCCTACTGCTAGAGAAGAGGAAGGCAGAGACAGGAAGATACCTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTACCCTACTGCTAGAGAAGAGGAAGGCAGAGACAGGAAGATACCTG  800

seq1  CATATCATTGCCCTGCCACTGTAACTGAATCAATGAGTTTCAGGTTCATT  849
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CATATCATTGCCCTGCCACTGTAACTGAATCAATGAGTTTCAGG-TCATT  849

seq1  GGGAGACCTTGACTCAAAAAATAAAGAAGCTGGGGAAAGACAACCTTTGC  899
      ||||||||||||||||||||||||||||||||||| |||||||| |||||
seq2  GGGAGACCTTGACTCAAAAAATAAAGAAGCTGGGGGAAGACAACTTTTGC  899

seq1  CCTTCCTGTGAATGCAAATACACTAGCTAGCAGAGCCCATGGCCACATAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTGTGAATGCAAATACACTAGCTAGCAGAGCCCATGGCCACATAT  949

seq1  AAACAATATACACACCCAGAAATTCGTTCTAGATACTTTAAATATTAACT  999
       ||| ||| |||||| ||| ||||||||||||||||||||||||||||||
seq2  TAAC-ATAAACACACTCAG-AATTCGTTCTAGATACTTTAAATATTAACT  997

seq1  TATCTATTATTATTTGTTATTATTATTATTCATAGCAATCTTAAGGAGGT  1049
      ||| ||||| |||||||   |||||| |     ||| ||||  |||| ||
seq2  TATTTATTA-TATTTGTATATATTATCA-----AGC-ATCT--AGGA-GT  1037

seq1  CAATATCCCCACATCATAGGTAGCAAAAAATTGGAGGCTCATAATAATAA  1099
       |||   ||| ||||||| |||||   ||||| || |||| ||||||| |
seq2  AAAT---CCCCCATCATA-GTAGC---AAATTTGA-GCTC-TAATAAT-A  1077

seq1  GTTAATGCAATGAATGAGCACGGCTGAGGCCCCCATGTCTGTCTACTGCC  1149
      ||  |||||||  |||||  ||| ||||   |||||||||||||| ||||
seq2  GT--ATGCAATTGATGAGATCGG-TGAG--TCCCATGTCTGTCTA-TGCC  1121

seq1  ACCCAAATGCTCACATTTCTCT  1171
      |||  ||||||||   ||||||
seq2  ACC--AATGCTCA---TTCTCT  1138