BAC Information

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BAC

Clone NameB6Ng01-021P03
Chromosome3 (Build37)
Map Location 33,918,125 - 34,071,416
singlet/doubletdoublet
Overlap geneLOC100041072, Fxr1h, Dnajc19
Upstream genePex2, EG545512, LOC100041058, Ttc14, Ccdc39, LOC100040232
Downstream geneLOC435727, EG665636, EG622074, Sox2, LOC100041108
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021P03.bB6Ng01-021P03.g
ACCDH854316DH854317
length8021,095
definitionDH854316|Mus musculus domesticus DNA, BAC clone: B6Ng01-021P03, 5' end.DH854317|Mus musculus domesticus DNA, BAC clone: B6Ng01-021P03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,918,125 - 33,918,924)(34,070,306 - 34,071,416)
sequence
gaattcttttaagtactatttccaaaagccttgctttcagaagttggcat
taacttatcaaactaagtatgagtgccacaaagcttctagaactggtggc
gtttctggtaaagtcacacaacacaaaacccaataggttcttggatcctc
tttgcaaaacttcccacgtgtaacctatcaggggtgggaggaatacactt
tcccattgtttaaaattttttaaaagtaatgccagcactccgatggccag
aggcagaagcagttctgtgggttcaaggccacccaggggtagagaactgt
gtctcaaacaggatccccccacaaaattagcctaggtttcccgagccttt
aataacgtattaaggtaaccgtgctcggtcggtgacaggtgagtgagctg
ccttcgcgcgaggcgaggcctgagaactgcgtgaggctcgggggaagccc
cgagtcccgggttcgtcctgggaaaggctcttcaaggggacggcccgagg
ctccagagggaaggctccatgagggcaaacctgagagtgtcggccggcca
tgcgctctggccgagcccgagcgcccgccaggccgcgcttcctgacggga
agagcccgtagggagcgtcgccggccgcgcggatcctggggcgagggtgg
cgcgccgggcgggtccgcctcactcattgtgcgctaggcgggccgcgcgg
gcgtgggcgtgggcggaccggcctgccgtttgggtagccgcccaaggacc
cgtgcagagcggcaccgctagcggagagcccgggagcgggccgggaacgt
ct
gaattctaaatcccaagcacacacttgaaaccgacatgaaaacacatctt
cctaattctattgcctatttctccctagatggttggtagaatgggattcc
ccgaaggaaatacggtcatcagcacctgctcccttcacaagcccagccct
ctcttccctccaatagcaggtaaagacatcagttaacagcctcacttcct
ctaccttgtgagagagaggcgacgtgacaaggctagagagtcattctcaa
ggataggctttcaatgggaaatgtcccctagataatgtttctgtgctttt
aacatttggtctccatccagtgatacaatgtcagaagaatgtggagagta
gaaccacacagggtgcatgggtcactgaagatgaggcttgagaattctta
gcctggaaccacttcctgtccacgcttgacttctcgactgtgggtacaat
gggagcagtttctcgggccgctgtaagcatgcctttcctatcacaataga
ctgtacccccctggaatttaagccccagtaaatccttcctccctcatgct
gcttcttgtctggtgtttggttatggcaagaaaaccatcacattagatgg
tttaggtactctcttgtctacccatgcttactaaatcctgcctagaaacc
aagtcaatatggaagaatagactcagaaaacagaacagaaattgtgaaga
cattatttggatccctagatgcacagtggctgctatcctttgattctcct
aaaacacagaatactattccaccaatagctctacagagaaagtagttctg
tgtaactgtacagtaagaaggttcagagtggagaaagtttagtctaattg
ggtgacctcagtaaaccaccatttatctcagtttccaggaatgagactga
aagaagtcacagtagtgtggaagttttaaccttccccttcctcagagctc
ttagaccatatagcaagatgttgctttttttatagctgtcacgaagagag
aagctgagtgccatttgtttggagattgggggaagaccgttgatgtctgg
actgggccctgccctactcactgctgaccgttagtgagtgtctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_33918125_33918924
seq2: B6Ng01-021P03.b_41_841

seq1  GAATTCTTTTAAGTACTATTTCCAAAAGCCTTGCTTTCAGAAGTTGGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTAAGTACTATTTCCAAAAGCCTTGCTTTCAGAAGTTGGCAT  50

seq1  TAACTTATCAAACTAAGTATGAGTGCCACAAAGCTTCTAGAACTGGTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTATCAAACTAAGTATGAGTGCCACAAAGCTTCTAGAACTGGTGGC  100

seq1  GTTTCTGGTAAAGTCACACAACACAAAACCCAATAGGTTCTTGGATCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGGTAAAGTCACACAACACAAAACCCAATAGGTTCTTGGATCCTC  150

seq1  TTTGCAAAACTTCCCACGTGTAACCTATCAGGGGTGGGAGGAATACACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAAAACTTCCCACGTGTAACCTATCAGGGGTGGGAGGAATACACTT  200

seq1  TCCCATTGTTTAAAATTTTTTAAAAGTAATGCCAGCACTCCGATGGCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATTGTTTAAAATTTTTTAAAAGTAATGCCAGCACTCCGATGGCCAG  250

seq1  AGGCAGAAGCAGTTCTGTGGGTTCAAGGCCACCCAGGGGTAGAGAACTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAAGCAGTTCTGTGGGTTCAAGGCCACCCAGGGGTAGAGAACTGT  300

seq1  GTCTCAAACAGGATCCCCCCACAAAATTAGCCTAGGTTTCCCGAGCCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAAACAGGATCCCCCCACAAAATTAGCCTAGGTTTCCCGAGCCTTT  350

seq1  AATAACGTATTAAGGTAACCGTGCTCGGTCGGTGACAGGTGAGTGAGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACGTATTAAGGTAACCGTGCTCGGTCGGTGACAGGTGAGTGAGCTG  400

seq1  CCTTCGCGCGAGGCGAGGCCTGAGAACTGCGTGAGGCTCGGGGGAAGCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCGCGCGAGGCGAGGCCTGAGAACTGCGTGAGGCTCGGGGGAAGCCC  450

seq1  CGAGTCCCGGGTTCGTCCTGGGAAAGGCTCTTCAAGGGGACGGCCCGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTCCCGGGTTCGTCCTGGGAAAGGCTCTTCAAGGGGACGGCCCGAGG  500

seq1  CTCCAGAGGGAAGGCTCCATGAGGGCAAACCTGAGAGTGTCGGCCGGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGAGGGAAGGCTCCATGAGGGCAAACCTGAGAGTGTCGGCCGGCCA  550

seq1  TGCGCTCTGGCCGAGCCCGAGCGCCCGCCAGGCCGCGCTTCCTGACGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCTCTGGCCGAGCCCGAGCGCCCGCCAGGCCGCGCTTCCTGACGGGA  600

seq1  AGAGCCCGTAGGGAGCGTCGCCGGCCGCGCGGATCCTGGGGCGAGGGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCCGTAGGGAGCGTCGCCGGCCGCGCGGATCCTGGGGCGAGGGTGG  650

seq1  CGCGCCGGGCGGGTCCGCCTCACTCATTGTGCGCGAGGCGGGCCGCGCGG  700
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CGCGCCGGGCGGGTCCGCCTCACTCATTGTGCGCTAGGCGGGCCGCGCGG  700

seq1  GCGTGGGCGTGGGCGGACCGGCCTGCCG-CTGGGTAGCCGCCCAAGGACC  749
      ||||||||||||||||||||||||||||  ||||||||||||||||||||
seq2  GCGTGGGCGTGGGCGGACCGGCCTGCCGTTTGGGTAGCCGCCCAAGGACC  750

seq1  CGCGCAGAGCGGCGCCGCTAGCGGAGAGCCCGGGAGCGGGCCGGGAGCGT  799
      || |||||||||| |||||||||||||||||||||||||||||||| |||
seq2  CGTGCAGAGCGGCACCGCTAGCGGAGAGCCCGGGAGCGGGCCGGGAACGT  800

seq1  C  800
      |
seq2  C  801

seq1: chr3_34070306_34071416
seq2: B6Ng01-021P03.g_69_1163 (reverse)

seq1  CCAGCCACTC-CTAACTGGTCAGCAGTTGATGTAGGGCATGGGCACAGTC  49
      |||| ||||| ||||| ||||||||| ||| |||||||| |||| |||||
seq2  CCAGACACTCACTAAC-GGTCAGCAG-TGA-GTAGGGCA-GGGCCCAGTC  46

seq1  CAGACATTCAACAGCGTCTCCCCCAATACTCCAAACAAATGGCAACTCAG  99
      |||||| ||||| |  | ||||||||| ||||||||||||||| ||||||
seq2  CAGACA-TCAACGGTCT-TCCCCCAAT-CTCCAAACAAATGGC-ACTCAG  92

seq1  CTTCCTTCTCTTCTGTTGACAGGCTAT-AAAAAAGCAACATCTTGCTTAT  148
      ||||  |||||||   ||||| ||||| |||||||||||||||||| |||
seq2  CTTC--TCTCTTC--GTGACA-GCTATAAAAAAAGCAACATCTTGC-TAT  136

seq1  ATGTGTCTATGAGCTCTGGAGGAAGGGGAGGGTTTAAAACTT-CACACTA  197
      ||| ||||| ||||||| ||||||||||| || ||||||||| |||||||
seq2  ATG-GTCTAAGAGCTCT-GAGGAAGGGGAAGG-TTAAAACTTCCACACTA  183

seq1  CTGTGACTTCTTTCAGTCTCATTCCTGGAAACTGAGATAAATGGTGGTTT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGACTTCTTTCAGTCTCATTCCTGGAAACTGAGATAAATGGTGGTTT  233

seq1  AACTGAGGTCA-CCAATTAGACTAGAACTTTCTCCACTCTGAACCTTCTT  296
       |||||||||| |||||||||||| |||||||||||||||||||||||||
seq2  -ACTGAGGTCACCCAATTAGACTA-AACTTTCTCCACTCTGAACCTTCTT  281

seq1  ACTGTACAGTTACACAGAACTACTTTCTCTGTAGAGCTATTGGTGGAATA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTACAGTTACACAGAACTACTTTCTCTGTAGAGCTATTGGTGGAATA  331

seq1  GTTATTCTGTGTTTTAGGAGAATCAAAGGATAGCAGCCACTGTGCATCTA  396
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  G-TATTCTGTGTTTTAGGAGAATCAAAGGATAGCAGCCACTGTGCATCTA  380

seq1  GGGATCCAAATAATGTCTTCACAATTTCTGTTCTGTTTTCTGAGTCTATT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCCAAATAATGTCTTCACAATTTCTGTTCTGTTTTCTGAGTCTATT  430

seq1  CTTCCATATTGACTTGGTTTCTAGGCAGGATTTAGTAAGCATGGGTAGAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATATTGACTTGGTTTCTAGGCAGGATTTAGTAAGCATGGGTAGAC  480

seq1  AAGAGAGTACCTAAACCATCTAATGTGATGGTTTTCTTGCCATAACCAAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGTACCTAAACCATCTAATGTGATGGTTTTCTTGCCATAACCAAA  530

seq1  CACCAGACAAGAAGCAGCATGAGGGAGGAAGGATTTACTGGGGCTTAAAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGACAAGAAGCAGCATGAGGGAGGAAGGATTTACTGGGGCTTAAAT  580

seq1  TCCAGGGGGGTACAGTCTATTGTGATAGGAAAGGCATGCTTACAGCGGCC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGGGGGTACAGTCTATTGTGATAGGAAAGGCATGCTTACAGCGGCC  630

seq1  CGAGAAACTGCTCCCATTGTACCCACAGTCGAGAAGTCAAGCGTGGACAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGAAACTGCTCCCATTGTACCCACAGTCGAGAAGTCAAGCGTGGACAG  680

seq1  GAAGTGGTTCCAGGCTAAGAATTCTCAAGCCTCATCTTCAGTGACCCATG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGGTTCCAGGCTAAGAATTCTCAAGCCTCATCTTCAGTGACCCATG  730

seq1  CACCCTGTGTGGTTCTACTCTCCACATTCTTCTGACATTGTATCACTGGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTGTGTGGTTCTACTCTCCACATTCTTCTGACATTGTATCACTGGA  780

seq1  TGGAGACCAAATGTTAAAAGCACAGAAACATTATCTAGGGGACATTTCCC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGACCAAATGTTAAAAGCACAGAAACATTATCTAGGGGACATTTCCC  830

seq1  ATTGAAAGCCTATCCTTGAGAATGACTCTCTAGCCTTGTCACGTCGCCTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAAGCCTATCCTTGAGAATGACTCTCTAGCCTTGTCACGTCGCCTC  880

seq1  TCTCTCACAAGGTAGAGGAAGTGAGGCTGTTAACTGATGTCTTTACCTGC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCACAAGGTAGAGGAAGTGAGGCTGTTAACTGATGTCTTTACCTGC  930

seq1  TATTGGAGGGAAGAGAGGGCTGGGCTTGTGAAGGGAGCAGGTGCTGATGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGAGGGAAGAGAGGGCTGGGCTTGTGAAGGGAGCAGGTGCTGATGA  980

seq1  CCGTATTTCCTTCGGGGAATCCCATTCTACCAACCATCTAGGGAGAAATA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTATTTCCTTCGGGGAATCCCATTCTACCAACCATCTAGGGAGAAATA  1030

seq1  GGCAATAGAATTAGGAAGATGTGTTTTCATGTCGGTTTCAAGTGTGTGCT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATAGAATTAGGAAGATGTGTTTTCATGTCGGTTTCAAGTGTGTGCT  1080

seq1  TGGGATTTAGAATTC  1111
      |||||||||||||||
seq2  TGGGATTTAGAATTC  1095