BAC Information

Click to search

BAC

Clone NameB6Ng01-022E05
Chromosome3 (Build37)
Map Location 149,218,522 - 149,358,541
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040354, Lphn2, LOC100040368, LOC668893, EG381483
Downstream geneLOC100040620, LOC100040633, LOC100040455, LOC100040463, LOC623554
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022E05.bB6Ng01-022E05.g
ACCDH854531DH854532
length936932
definitionDH854531|Mus musculus domesticus DNA, BAC clone: B6Ng01-022E05, 5' end.DH854532|Mus musculus domesticus DNA, BAC clone: B6Ng01-022E05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(149,218,522 - 149,219,460)(149,357,609 - 149,358,541)
sequence
gaattctatttccaaaaaattctaagcaattagcatgccatagtctgttt
atttggttattccattttgttgagagattcattatttcactaggctaggt
acattgcctggatatatttaaaagctatttcaaataatttagatcaatct
tccaagcttagggtttggatgctatctctggctaaattttactagtccct
cctgaaagctggtagcaacatgtaaagatatggttctctcagttcacctt
tctcgtagagcaggagactattttaatgcatcctaaagggaaattaaggt
tacttgtgaattttacttgaaatagcactagagattttaagtaaatgaag
acttctatggttactatggttataaacatgcaataattattaataattga
attcaaaatcactgagccttgatgtctggtcatcaaccctgtgccagaat
gaagtggtggcagagatcatgcttgatttttatcaaactttgtgcctccc
ctggttgaaaactcgtatctgacctgtgagagatggacctggccccaggg
tacagcatcagctgcagtcttttctctgtaagattataagccaagaagaa
cacgtgaagacctgaaattcgtctcatgaaacaatccttggccttaagaa
tgtaataaaaatcactaagttagttttgaacatggctttgttgatgattt
tttttaaagattccaatcagagcctacttcatccacctgaaaacctgtca
aaaagtcacgcagagaggtgacttttgtgaagagtgtttctggcatggaa
gtgacttttatgcacacctgaaattatgcaaaggaaaacaagctgttcca
cagcctaacccccctccccactttaccttctgtaagcaggtcttcagagc
acagcagagtttgcacaaaactaaggaccagctgaa
gaattcactgagtgggttaggcagtttgaaactatacttaaacacccttt
cccaagctgcttgagtttagctatcttttcccataactatcaaagcctcc
ttgacaagaattgggcatccctaatacccatatggattcagacattccag
ggaggaaatggattgtaattctggcagctgaagtgaactgcacgtccatg
tgtaagcattcccagccacgggagttggaattcaatctgtggttacaaac
catctttgttaattagaggcttcttcgtttctcaccttcacaagtaaagt
tatgagaagccctgcacttgtcttgtttatctctaattcccacttggcag
gcaccgtaaaaaaaaagaagaagaagaagaagaagaagaagaagaagaag
aagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaa
gaagaagaagaagaaaattccccaaagtgctgtcttatgcctggagtctc
caacctggcacggctctcagctttgacctcggggaattcttgtgtgcgag
tcttcctgtggtttgcctctgaaagatctctccaaatcgagagagaacat
gaaggatgactctagaagggagctcaacaacccaggtttatttgaagtgg
ttcacaagagcaggtctcttgcaggaccaagctgccacagcgtggtctca
gataattgctctttacaaagtaattcaggaagagccaattagctgaacaa
ttaaaagatgtgctaacagcccaatacacattcatcagaattagcacgct
caaaccttttctgtagatactacatcaatcagagtgtagaaacgtagatc
ttggaagccatgcccttggctctctcacctactacctacccatagcttct
gtcacattccatccacacatgggcactctgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_149218522_149219460
seq2: B6Ng01-022E05.b_42_977

seq1  GAATTCTATTTCCAAAAAATTCTAAGCAATTAGCATGCCATAGTCTGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTTCCAAAAAATTCTAAGCAATTAGCATGCCATAGTCTGTTT  50

seq1  ATTTGGTTATTCCATTTTGTTGAGAGATTCATTATTTCACTAGGCTAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGTTATTCCATTTTGTTGAGAGATTCATTATTTCACTAGGCTAGGT  100

seq1  ACATTGCCTGGATATATTTAAAAGCTATTTCAAATAATTTAGATCAATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGCCTGGATATATTTAAAAGCTATTTCAAATAATTTAGATCAATCT  150

seq1  TCCAAGCTTAGGGTTTGGATGCTATCTCTGGCTAAATTTTACTAGTCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGCTTAGGGTTTGGATGCTATCTCTGGCTAAATTTTACTAGTCCCT  200

seq1  CCTGAAAGCTGGTAGCAACATGTAAAGATATGGTTCTCTCAGTTCACCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAAGCTGGTAGCAACATGTAAAGATATGGTTCTCTCAGTTCACCTT  250

seq1  TCTCGTAGAGCAGGAGACTATTTTAATGCATCCTAAAGGGAAATTAAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGTAGAGCAGGAGACTATTTTAATGCATCCTAAAGGGAAATTAAGGT  300

seq1  TACTTGTGAATTTTACTTGAAATAGCACTAGAGATTTTAAGTAAATGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGTGAATTTTACTTGAAATAGCACTAGAGATTTTAAGTAAATGAAG  350

seq1  ACTTCTATGGTTACTATGGTTATAAACATGCAATAATTATTAATAATTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTATGGTTACTATGGTTATAAACATGCAATAATTATTAATAATTGA  400

seq1  ATTCAAAATCACTGAGCCTTGATGTCTGGTCATCAACCCTGTGCCAGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAAATCACTGAGCCTTGATGTCTGGTCATCAACCCTGTGCCAGAAT  450

seq1  GAAGTGGTGGCAGAGATCATGCTTGATTTTTATCAAACTTTGTGCCTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGGTGGCAGAGATCATGCTTGATTTTTATCAAACTTTGTGCCTCCC  500

seq1  CTGGTTGAAAACTCGTATCTGACCTGTGAGAGATGGACCTGGCCCCAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTGAAAACTCGTATCTGACCTGTGAGAGATGGACCTGGCCCCAGGG  550

seq1  TACAGCATCAGCTGCAGTCTTTTCTCTGTAAGATTATAAGCCAAGAAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCATCAGCTGCAGTCTTTTCTCTGTAAGATTATAAGCCAAGAAGAA  600

seq1  CACGTGAAGACCTGAAATTCGTCTCATGAAACAATCCTTGGCCTTAAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTGAAGACCTGAAATTCGTCTCATGAAACAATCCTTGGCCTTAAGAA  650

seq1  TGTAATAAAAATCACTAAGTTAGTTTTGAACATGGCTTTGTTGATGATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATAAAAATCACTAAGTTAGTTTTGAACATGGCTTTGTTGATGATTT  700

seq1  TTTTTAAAGATTCCAATCAGAGCCTACTTCATCCACCTGAAAACCTGTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAGATTCCAATCAGAGCCTACTTCATCCACCTGAAAACCTGTCA  750

seq1  AAAAGTCACGCAGAGAGGTGACTTTTGTGAAGAGTGTTTCTGGCATGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCACGCAGAGAGGTGACTTTTGTGAAGAGTGTTTCTGGCATGGAA  800

seq1  GTGACTTTTATGCACACCTGAAATTATGCAAAGGAAAACAAGCTGTTCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTTTTATGCACACCTGAAATTATGCAAAGGAAAACAAGCTGTTCCA  850

seq1  CAGCCTAACCCCCCTCCCCAACTTTACCTTCCTGTAAGCAGGTCTTCAGA  900
      ||||||||||||||||||| |||||||||| |||||||||||||||||||
seq2  CAGCCTAACCCCCCTCCCC-ACTTTACCTT-CTGTAAGCAGGTCTTCAGA  898

seq1  GCACAGCAGAGTTTGCACAAAACTAAAGGACCAGCTGAA  939
      |||||||||||||||||||||||| ||||||||||||||
seq2  GCACAGCAGAGTTTGCACAAAACT-AAGGACCAGCTGAA  936

seq1: chr3_149357609_149358541
seq2: B6Ng01-022E05.g_65_996 (reverse)

seq1  TACAGAGTGCCCATGTGGTGGATGGAATGTGGACAGGAAGCTATGGGTAG  50
      |||||||||||||||| ||||||||||||| |||| ||||||||||||||
seq2  TACAGAGTGCCCATGT-GTGGATGGAATGT-GACA-GAAGCTATGGGTAG  47

seq1  GTAGTAGGTGAGGAGAGCCAAGGGCATGGCTTCCAAGATCTACGTTTCTT  100
      ||||||||||| |||||||||||||||||||||||||||||||||||| |
seq2  GTAGTAGGTGA-GAGAGCCAAGGGCATGGCTTCCAAGATCTACGTTTC-T  95

seq1  ACACTCTGATTGATGTAGTATCTACAG-AAAGGTTTGAGCGTGCTAATTC  149
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ACACTCTGATTGATGTAGTATCTACAGAAAAGGTTTGAGCGTGCTAATTC  145

seq1  TGATGAATGTGTATTGGGCTGTTAGCACATCTTTTAATTGTTCAGCTAAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAATGTGTATTGGGCTGTTAGCACATCTTTTAATTGTTCAGCTAAT  195

seq1  TGGCTCTTCCTGAATTACTTTGTAAAGAGCAATTATCTGAGACCACGCTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTTCCTGAATTACTTTGTAAAGAGCAATTATCTGAGACCACGCTG  245

seq1  TGGCAGCTTGGTCCTGCAAGAGACCTGCTCTTGTGAACCACTTCAAATAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGCTTGGTCCTGCAAGAGACCTGCTCTTGTGAACCACTTCAAATAA  295

seq1  ACCTGGGTTGTTGAGCTCCCTTCTAGAGTCATCCTTCATGTTCTCTCTCG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGTTGTTGAGCTCCCTTCTAGAGTCATCCTTCATGTTCTCTCTCG  345

seq1  ATTTGGAGAGATCTTTCAGAGGCAAACCACAGGAAGACTCGCACACAAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGAGAGATCTTTCAGAGGCAAACCACAGGAAGACTCGCACACAAGA  395

seq1  ATTCCCCGAGGTCAAAGCTGAGAGCCGTGCCAGGTTGGAGACTCCAGGCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCCGAGGTCAAAGCTGAGAGCCGTGCCAGGTTGGAGACTCCAGGCA  445

seq1  TAAGACAGCACTTTGGGGAATT---TTCTTCTTCTTCTTCTTCTTCTTCT  496
      ||||||||||||||||||||||   |||||||||||||||||||||||||
seq2  TAAGACAGCACTTTGGGGAATTTTCTTCTTCTTCTTCTTCTTCTTCTTCT  495

seq1  TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC  545

seq1  TTCTTCTTCTTCTTCTTCTTCTTTTTTTTTACGGTGCCTGCCAAGTGGGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTCTTCTTCTTCTTCTTTTTTTTTACGGTGCCTGCCAAGTGGGA  595

seq1  ATTAGAGATAAACAAGACAAGTGCAGGGCTTCTCATAACTTTACTTGTGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAGATAAACAAGACAAGTGCAGGGCTTCTCATAACTTTACTTGTGA  645

seq1  AGGTGAGAAACGAAGAAGCCTCTAATTAACAAAGATGGTTTGTAACCACA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAGAAACGAAGAAGCCTCTAATTAACAAAGATGGTTTGTAACCACA  695

seq1  GATTGAATTCCAACTCCCGTGGCTGGGAATGCTTACACATGGACGTGCAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAATTCCAACTCCCGTGGCTGGGAATGCTTACACATGGACGTGCAG  745

seq1  TTCACTTCAGCTGCCAGAATTACAATCCATTTCCTCCCTGGAATGTCTGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTTCAGCTGCCAGAATTACAATCCATTTCCTCCCTGGAATGTCTGA  795

seq1  ATCCATATGGGTATTAGGGATGCCCAATTCTTGTCAAGGAGGCTTTGATA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATATGGGTATTAGGGATGCCCAATTCTTGTCAAGGAGGCTTTGATA  845

seq1  GTTATGGGAAAAGATAGCTAAACTCAAGCAGCTTGGGAAAGGGTGTTTAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGGGAAAAGATAGCTAAACTCAAGCAGCTTGGGAAAGGGTGTTTAA  895

seq1  GTATAGTTTCAAACTGCCTAACCCACTCAGTGAATTC  933
      |||||||||||||||||||||||||||||||||||||
seq2  GTATAGTTTCAAACTGCCTAACCCACTCAGTGAATTC  932