BAC Information

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BAC

Clone NameB6Ng01-022H09
Chromosome3 (Build37)
Map Location 110,666,176 - 110,667,288
singlet/doubletsinglet
Overlap genenone
Upstream geneNtng1, LOC100043181, LOC100043183, Prmt6
Downstream geneLOC100043190, LOC668712
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022H09.bB6Ng01-022H09.g
ACCDH854667DH854668
length1,1031,061
definitionDH854667|Mus musculus domesticus DNA, BAC clone: B6Ng01-022H09, 5' end.DH854668|Mus musculus domesticus DNA, BAC clone: B6Ng01-022H09, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttcacatcataaaccttcattttaagctcaggtaaatattcaa
aaaagggaattatatacatcagaatttattctagtcatgaaatcatcaat
aattgttataatttgaaaaaagtttacttttaatgtcagaaaaacctttc
tcaatcttaataatattgtttattaagcataaaattttcatattatttta
gagttaaatccaattaatgtttaataactatgctgagttttacaaaagag
ttaatccttgagttacactttgaaaattcttcactgttctttatagtcag
ttaaatttttgcaataattccaagttttttctaactataagtggcttaat
atgtgaaaaataacaagtaaatattgttcctaatttaaagactcagatag
tctacacaaaccttaactctgagtttctaatgctctgagatcatcaggta
acatgtgaaggtgttttataaaggcaataaatatacctgaatagggacag
aagatatgatttttgtactcttttaaaaggggtggtcataaaagtggtta
gaacaaagaactgaaatgttagagaattcctaaaagccacagcagttaga
atattagcaccttatgaactgatacttgcttctaaaagtttgcaagccct
agataacagagggtctatagccaactgtcagttctgtctttggtgttctc
tactggtggagcagatgaagactataagcagagcagcagtatcatacttg
tacctcaactagtcccacagagagcaatatccatctaacattagggaagg
aaaaagaatttcagctttccccaagccatgggccattgttttgataaaag
taatcagaataaaaatatctgctaggagacttagctactccagagaagtg
agagaggaaagaaatcttcggcttctgtgggacagtgtgcaagcccctta
tctgaggacttgtcaccgcaccaagtgcatgcaagggattatgggtgaaa
ttgcaaggcatatagaattatgaaacccatgattgagataaatgccagaa
acccccatctttgaaagttgagtaaaagatccctcttgtcactctccctg
act
gaattcaagaaggtggactccagaaaatcaaataaccccactaaaaatgg
ggctcagagctaaaaaagaattctcacctggggaataccgaaaggctgag
aagcacctgaaaaaatgttcaacatcctaaatcatcagggaaatgcaaat
caaaacaaccctgagattccacctcacaccagtcagaatggctaagatca
aaaattcaggtgacagcagatgctggcaaggatgtggagaaagaggaaca
ctcctccattgttggtgggattgcaagcttgtacaaccactctggaaatc
agtctggtggttcctcagaaaattggacatggtagtacctgaggatcccg
caatacttctactgggcatctatccagaagatgttccaaccggtaagaag
gacacatgctccactatgttcatagcagccttatttataatagccagaag
ctggaaagaacccaggtgtccatcaacagaggaatggatagagaaaatgt
ggtacatttacacaatggagtactactcagctattaaaaagaatgaattc
atgaaatttctaggcaaatggatggacctggagggcatcatcctgattga
ggtaacccaatcacaaaagaactcacacaatatgtactcactgataagtg
gatactagcctagaaacttagaatacccaagatataatatacaatttgct
aacacatgaaactcaagaagaacgaagacccaagtgtggacactttgctc
ctttttgaattgggaaaaaacatccatggaaggagttacagagacacagt
ttggagctgagatggaaggatggaccatctagagactgcctgtccaggat
ccaccccaaaatcagcttccaaacgttgacaccattgcatacacttacaa
gatttgctgaaggacccaaatttagctgtctctgtgagactatgcaaggg
ctatcacacaaagtgggatgctcgctgtcagctatggatggatcacagat
ctcattggagagggagaggaagtaccaggagctaagggattgctacccta
tagttggacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_110666176_110667288
seq2: B6Ng01-022H09.b_43_1145 (reverse)

seq1  AGTCAGGGAGAGTTGAC-AGAGGTGATTCTCTTACTCAACTTTTTCTAAG  49
      |||||||||||| |||| ||||| || ||| |||||||||  |||| |||
seq2  AGTCAGGGAGAG-TGACAAGAGG-GA-TCTTTTACTCAAC--TTTCAAAG  45

seq1  ATGTGGGGTTTTCTTGGCATTTTTCTCCTATCATGTGTTTCATATTTCTA  99
      ||| |||||||   |||||||| ||| | |||||| |||||||| |||||
seq2  ATG-GGGGTTT--CTGGCATTTATCT-CAATCATGGGTTTCATAATTCTA  91

seq1  TATGCCTTGCATTTTCACCCATAATCCCTTGCATGCACTTGGTGCGGTGA  149
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TATGCCTTGCAATTTCACCCATAATCCCTTGCATGCACTTGGTGCGGTGA  141

seq1  CAAGTCCTCAGATAAGGGGGCTTGCACACTGTCCCACAGAAGCCGAAGAT  199
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CAAGTCCTCAGATAA-GGGGCTTGCACACTGTCCCACAGAAGCCGAAGAT  190

seq1  TTCTTTCCTCTCTCACTTTCTCTGGAGTAGCTAAGTCTCCTAGCAGATAA  249
      |||||||||||||||| ||||||||||||||||||||||||||||||| |
seq2  TTCTTTCCTCTCTCAC-TTCTCTGGAGTAGCTAAGTCTCCTAGCAGAT-A  238

seq1  TTTTTATTCTGATTACTTTTATCAAAACAATGGCCCATGGCTTGGGGAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTCTGATTACTTTTATCAAAACAATGGCCCATGGCTTGGGGAAA  288

seq1  GCTGAAATTCTTTTTCCTTCCCTAATGTTAGATGGATATTGCTCTCTGTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAATTCTTTTTCCTTCCCTAATGTTAGATGGATATTGCTCTCTGTG  338

seq1  GGACTAGTTGAGGTACAAGTATGATACTGCTGCTCTGCTTATAGTCTTCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTAGTTGAGGTACAAGTATGATACTGCTGCTCTGCTTATAGTCTTCA  388

seq1  TCTGCTCCACCAGTAGAGAACACC-AAGACAGAACTGACAGTTGGCTATA  448
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TCTGCTCCACCAGTAGAGAACACCAAAGACAGAACTGACAGTTGGCTATA  438

seq1  GACCCTCTGTTATCTAGGGCTTGCAAACTTTTAGAAGCAAGTATCAGTTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTCTGTTATCTAGGGCTTGCAAACTTTTAGAAGCAAGTATCAGTTC  488

seq1  ATAAGGTGCTAATATTCTAACTGCTGTGGCTTTTAGGAATTCTCTAACAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGTGCTAATATTCTAACTGCTGTGGCTTTTAGGAATTCTCTAACAT  538

seq1  TTCAGTTCTTTGTTCTAACCACTTTTATGACCACCCCTTTTAAAAGAGTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTCTTTGTTCTAACCACTTTTATGACCACCCCTTTTAAAAGAGTA  588

seq1  CAAAAATCATATCTTCTGTCCCTATTCAGGTATATTTATTGCCTTTATAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATCATATCTTCTGTCCCTATTCAGGTATATTTATTGCCTTTATAA  638

seq1  AACACCTTCACATGTTACCTGATGATCTCAGAGCATTAGAAACTCAGAGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCTTCACATGTTACCTGATGATCTCAGAGCATTAGAAACTCAGAGT  688

seq1  TAAGGTTTGTGTAGACTATCTGAGTCTTTAAATTAGGAACAATATTTACT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTTTGTGTAGACTATCTGAGTCTTTAAATTAGGAACAATATTTACT  738

seq1  TGTTATTTTTCACATATTAAGCCACTTATAGTTAGAAAAAACTTGGAATT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTTTTCACATATTAAGCCACTTATAGTTAGAAAAAACTTGGAATT  788

seq1  ATTGCAAAAATTTAACTGACTATAAAGAACAGTGAAGAATTTTCAAAGTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAAAAATTTAACTGACTATAAAGAACAGTGAAGAATTTTCAAAGTG  838

seq1  TAACTCAAGGATTAACTCTTTTGTAAAACTCAGCATAGTTATTAAACATT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCAAGGATTAACTCTTTTGTAAAACTCAGCATAGTTATTAAACATT  888

seq1  AATTGGATTTAACTCTAAAATAATATGAAAATTTTATGCTTAATAAACAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGATTTAACTCTAAAATAATATGAAAATTTTATGCTTAATAAACAA  938

seq1  TATTATTAAGATTGAGAAAGGTTTTTCTGACATTAAAAGTAAACTTTTTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTAAGATTGAGAAAGGTTTTTCTGACATTAAAAGTAAACTTTTTT  988

seq1  CAAATTATAACAATTATTGATGATTTCATGACTAGAATAAATTCTGATGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTATAACAATTATTGATGATTTCATGACTAGAATAAATTCTGATGT  1038

seq1  ATATAATTCCCTTTTTTGAATATTTACCTGAGCTTAAAATGAAGGTTTAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATTCCCTTTTTTGAATATTTACCTGAGCTTAAAATGAAGGTTTAT  1088

seq1  GATGTGAAAGAATTC  1113
      |||||||||||||||
seq2  GATGTGAAAGAATTC  1103