BAC Information

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BAC

Clone NameB6Ng01-022M03
Chromosome3 (Build37)
Map Location 19,795,076 - 19,960,842
singlet/doubletdoublet
Overlap gene4632415L05Rik, Cp, Hps3, Hltf
Upstream geneArmc1, Mtfr1, Pde7a, Dnajc5b, EG620290, Trim55, Crh, LOC665002, LOC100039304, LOC100040237
Downstream geneGyg, Cpa3, EG664965, LOC100040283, Cpb1, Agtr1b, EG665094
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022M03.bB6Ng01-022M03.g
ACCDH854874DH854875
length9671,070
definitionDH854874|Mus musculus domesticus DNA, BAC clone: B6Ng01-022M03, 5' end.DH854875|Mus musculus domesticus DNA, BAC clone: B6Ng01-022M03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,959,871 - 19,960,842)(19,795,076 - 19,796,158)
sequence
gaattcacaaaaattcaaaaaacaattgttcttccctaagtaatctccta
tatactacctctcatacaactactaaacaactgagttatgccaacgtaaa
aaatacagagaataaaaacatgacaaacaggaaacacagaattcctccaa
ggaacctcctcaaatttcaattacaaatagagttctgagatcatcaagta
ctcagaaggctgggacaagtggaccactatgagttcagggtcaaccttgg
attacttagtgagttccagaccagaatggttccaaaccattccccccaca
cacatggaaaaaaaaacttttaataaaccttaatataaaaatatgaaaac
agggggctggtgagatggctcagtgggtaagagcacccgactgctcttcc
gaaggtccggaactcaaatcccagcaaccacatggtggctcacaaccatc
tgtaacaagatctgacgccctcttctggagtgtctgaagatagctacagt
gtacttacatataataaataaataaatctttaaaaaatatatatatgaaa
acaatgagagaagggggaaagtaagaaattaacaagattccacaaaagag
accttacttttaaatgatacacatctatagcaggaaatgagaacggacct
tatagcccataacagccaaaactaatataataattttgatcataactgga
agaaatacagtttaaataatcaacaaaatccaattattgattgcatgtgt
atacacacacacacacacacacacacacacacatatatatatatatatat
atattgattccattaataaaaatgaaatgtaaaaactgagagttttttta
aagatgtattttatttttaatcatgcatatgtgtgtatggggggggacag
tagtcatgtatgccagaagagggcatgggaacactgcagtgcagtgctgt
gtgccagcaagagtact
ccttggcaccctaccggctccggaccgcactcccggacaggccgagctgc
cggccttggcgcgggacagcacgcagctgctcatcaccgtgctgctgccg
accgtgcgctgggggaggcggtggtagcgcgcttgccggtgccctccact
cgcttgccccgcgggaagctgctatccgtgccgcggctgctcacccgctg
gcagcagttcgcgcgtcatcagagcatccacccaagaagaccactttctt
gtgggacgaggtgagtggccagtgacggtgctgattggactgcaagctcg
cccggaaccacagtatggaatggctgataaatgtgcctgggggcacccga
ccccatggaagcagatttaggccaagaaggaacgcgtggccaagaacgag
ctaaaacgaccgcggatccgagtgcacaagatgtagatgcccaactcagt
cggcctgcacccaacgagacacctgagtaaggaggagctggtctgcgccc
agcaagtggccagtgactccaccgctgcagtgggacgcttccaggagcgc
ctctctaaggagaagacgcccctagagccccggaagaagaggaagtttta
gtccctctttgaggactttgtgaccgagaaaatgaccagttggagctact
gaaagtcaagaacagcaagaagcctcatcaggatgtgagggggcgcatca
acaagcagatgagagaagaggaaaatgagccagaaaggcgaagagaaagg
ggatccagcaaagatctttgagtaagagcagggggctggagagatgggct
tagcagttaagagcactgactttcccttccagaggtcctgagttcattcc
cagcaaccacatggtggctaataataaatataaatctaaaaaaaaaaaag
attccaggcagctgctctaggtgacagaggaagaagaatgtaccaaggaa
gcagtgttctcccatggatctgttctgccagctgcaagctggtgcaggag
ggtggccccaccctcgtgagctgacattaagggacagggtggcctccctg
cgtccgtggtggactatgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_19959871_19960842
seq2: B6Ng01-022M03.b_42_1008 (reverse)

seq1  AGTACTCTTGGCTGGCACAACAGCAACTGCAGCTGCAGGTGTCCCAATGC  50
      ||||||||| |||||||| ||||| |||||| ||||| |||| || ||||
seq2  AGTACTCTT-GCTGGCAC-ACAGC-ACTGCA-CTGCA-GTGTTCCCATGC  45

seq1  CCTCTTCTGGCATACATGACTACTGTCCCCCCCCATACACACATATGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCTGGCATACATGACTACTGTCCCCCCCCATACACACATATGCAT  95

seq1  GATTAAAAATAAAATACATCTTTAAAAAAACTCTCAGTTTTTACATTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAAATAAAATACATCTTTAAAAAAACTCTCAGTTTTTACATTTCA  145

seq1  TTTTTATTAATGGAATCAATATATATATATATATATATATGTGTGTGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTAATGGAATCAATATATATATATATATATATATGTGTGTGTGT  195

seq1  GTGTGTGTGTGTGTGTGTGTATACACATGCAATCAATAATTGGATTTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTATACACATGCAATCAATAATTGGATTTTGT  245

seq1  TGATTATTTAAACTGTATTTCTTCCAGTTATGATCAAAATTATTATATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTATTTAAACTGTATTTCTTCCAGTTATGATCAAAATTATTATATTA  295

seq1  GTTTTGGCTGTTATGGGCTATAAGGTCCGTTCTCATTTCCTGCTATAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGGCTGTTATGGGCTATAAGGTCCGTTCTCATTTCCTGCTATAGAT  345

seq1  GTGTATCATTTAAAAGTAAGGTCTCTTTTGTGGAATCTTGTTAATTTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATCATTTAAAAGTAAGGTCTCTTTTGTGGAATCTTGTTAATTTCTT  395

seq1  ACTTTCCCCCTTCTCTCATTGTTTTCATATATATATTTTTTAAAGATTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCCCCCTTCTCTCATTGTTTTCATATATATATTTTTTAAAGATTTA  445

seq1  TTTATTTATTATATGTAAGTACACTGTAGCTATCTTCAGACACTCCAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATTATATGTAAGTACACTGTAGCTATCTTCAGACACTCCAGAA  495

seq1  GAGGGCGTCAGATCTTGTTACAGATGGTTGTGAGCCACCATGTGGTTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCGTCAGATCTTGTTACAGATGGTTGTGAGCCACCATGTGGTTGCT  545

seq1  GGGATTTGAGTTCCGGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTTGAGTTCCGGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCAC  595

seq1  TGAGCCATCTCACCAGCCCCCTGTTTTCATATTTTTATATTAAGGTTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCATCTCACCAGCCCCCTGTTTTCATATTTTTATATTAAGGTTTAT  645

seq1  TAAAAGTTTTTTTTTCCATGTGTGTGGGGGGAATGGTTTGGAACCATTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTTTTTTTTTCCATGTGTGTGGGGGGAATGGTTTGGAACCATTCT  695

seq1  GGTCTGGAACTCACTAAGTAATCCAAGGTTGACCCTGAACTCATAGTGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGGAACTCACTAAGTAATCCAAGGTTGACCCTGAACTCATAGTGGT  745

seq1  CCACTTGTCCCAGCCTTCTGAGTACTTGATGATCTCAGAACTCTATTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTGTCCCAGCCTTCTGAGTACTTGATGATCTCAGAACTCTATTTGT  795

seq1  AATTGAAATTTGAGGAGGTTCCTTGGAGGAATTCTGTGTTTCCTGTTTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAAATTTGAGGAGGTTCCTTGGAGGAATTCTGTGTTTCCTGTTTGT  845

seq1  CATGTTTTTATTCTCTGTATTTTTTACGTTGGCATAACTCAGTTGTTTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTTTATTCTCTGTATTTTTTACGTTGGCATAACTCAGTTGTTTAG  895

seq1  TAGTTGTATGAGAGGTAGTATATAGGAGATTACTTAGGGAAGAACAATTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGTATGAGAGGTAGTATATAGGAGATTACTTAGGGAAGAACAATTG  945

seq1  TTTTTTGAATTTTTGTGAATTC  972
      ||||||||||||||||||||||
seq2  TTTTTTGAATTTTTGTGAATTC  967

seq1: chr3_19795076_19796158
seq2: B6Ng01-022M03.g_75_1144

seq1  CCTTGGCACCCTACCGGCTCCGGACCGCACTCCCGGACAGGCCGAGCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGCACCCTACCGGCTCCGGACCGCACTCCCGGACAGGCCGAGCTGC  50

seq1  CGGCCTTGGCGCGGGACAGCACGCAGCTGCTCATCACCGTGCTGCTGCCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCTTGGCGCGGGACAGCACGCAGCTGCTCATCACCGTGCTGCTGCCG  100

seq1  ACCGTGCGCTGGGGGAGGCGGTGGTAGCGCGCTTGCCGGTGCCCTCCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTGCGCTGGGGGAGGCGGTGGTAGCGCGCTTGCCGGTGCCCTCCACT  150

seq1  CGCTTGCCCCGCGGGAAGCTGCTATCCGTGCCGCGGCTGCTCACCCGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTGCCCCGCGGGAAGCTGCTATCCGTGCCGCGGCTGCTCACCCGCTG  200

seq1  GCAGCAGTTCGCGCGTCATCAGAGCATCCACCCAAGAAGACCACTTTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGTTCGCGCGTCATCAGAGCATCCACCCAAGAAGACCACTTTCTT  250

seq1  GTGGGACGAGGTGAGTGGCCAGTGACGGTGCTGATTGGACTGCAAGCTCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGACGAGGTGAGTGGCCAGTGACGGTGCTGATTGGACTGCAAGCTCG  300

seq1  CCCGGAACCACAGTATGGAATGGCTGATAAATGTGCCTGGGGGCACCCGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGAACCACAGTATGGAATGGCTGATAAATGTGCCTGGGGGCACCCGA  350

seq1  CCCCATGGAAGCAGATTTAGGCCAAGAAGGAACGCGTGGCCAAGAACGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATGGAAGCAGATTTAGGCCAAGAAGGAACGCGTGGCCAAGAACGAG  400

seq1  CTAAAACGACCGCGGATCCGAGTGCACAAGATGTAGATGCCCAACTCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAACGACCGCGGATCCGAGTGCACAAGATGTAGATGCCCAACTCAGT  450

seq1  CGGCCTGCACCCAACGAGACACCTGAGTAAGGAGGAGCTGGTCTGCGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCTGCACCCAACGAGACACCTGAGTAAGGAGGAGCTGGTCTGCGCCC  500

seq1  AGCAAGTGGCCAGTGACTCCACCGCTGCAGTGGGACGCTTCCAGGAGCGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGTGGCCAGTGACTCCACCGCTGCAGTGGGACGCTTCCAGGAGCGC  550

seq1  CTCTCTAAGGAGAAGACGCCCCTAGAGCCCCGGAAGAAGAGGAAGTTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTAAGGAGAAGACGCCCCTAGAGCCCCGGAAGAAGAGGAAGTTTTA  600

seq1  GTCCCTCTTTGAGGACTTTGTGACCGAGAAAATGACCAGTTGGAGCTACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTCTTTGAGGACTTTGTGACCGAGAAAATGACCAGTTGGAGCTACT  650

seq1  GAAAGTCAAGAACAGCAAGAAGCCTCATCAGGATGTGAGGGGGCGCATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTCAAGAACAGCAAGAAGCCTCATCAGGATGTGAGGGGGCGCATCA  700

seq1  ACAAGCAGATGAGAGAAGAGGAAAATGAGCCAGAAAGGCGAAGAGAAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCAGATGAGAGAAGAGGAAAATGAGCCAGAAAGGCGAAGAGAAAGG  750

seq1  GGATCCAGCAAAGATCTTTGAGTAAGAGCA-GGGGCTGGAGAGAT-GGCT  798
      |||||||||||||||||||||||||||||| |||||||||||||| ||||
seq2  GGATCCAGCAAAGATCTTTGAGTAAGAGCAGGGGGCTGGAGAGATGGGCT  800

seq1  TAGCAGTTAAGAGCACTGAC-TTCCCTTCCAGAGGTCCTGAGTTCAATTC  847
      |||||||||||||||||||| |||||||||||||||||||||||| ||||
seq2  TAGCAGTTAAGAGCACTGACTTTCCCTTCCAGAGGTCCTGAGTTC-ATTC  849

seq1  CCAGCAACCACATGGTGGCTAAATAATAAATAATAAATCTAAAAAAAAAA  897
      |||||||||||||||||||| |||||||||| ||||||||||||||||||
seq2  CCAGCAACCACATGGTGGCT-AATAATAAAT-ATAAATCTAAAAAAAAAA  897

seq1  AAGCATTCCAGGCAGCCTGCTCTAGGTGACAAGAAGAAAGAAGAATTGTA  947
      ||| ||||||||||| |||||||||||||||   || |||||||| ||||
seq2  AAG-ATTCCAGGCAG-CTGCTCTAGGTGACA--GAGGAAGAAGAA-TGTA  942

seq1  CCAAGGAAGCAGTGTTCTCCCCATTGATCCTGTTCTGCCAAGCTGCAGGC  997
      |||||||||||||||||| ||||| ||| |||||||||| ||||||| ||
seq2  CCAAGGAAGCAGTGTTCT-CCCATGGAT-CTGTTCTGCC-AGCTGCAAGC  989

seq1  TGGTGCAGGA-GGTGGCCGCCACCCTCGTTGAGCTTGACATTGAAGGGAC  1046
      |||||||||| ||||||| ||||||||| ||||| ||||||| |||||||
seq2  TGGTGCAGGAGGGTGGCC-CCACCCTCG-TGAGC-TGACATT-AAGGGAC  1035

seq1  AGGTTTGCCTCCCTTCACGTCAGTGCTGGACTATGCT  1083
      ||| | ||||||||   |||| ||| |||||||||||
seq2  AGGGTGGCCTCCCT--GCGTCCGTGGTGGACTATGCT  1070