BAC Information

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BAC

Clone NameB6Ng01-022O11
Chromosome3 (Build37)
Map Location 136,272,911 - 136,431,285
singlet/doubletdoublet
Overlap genePpp3ca
Upstream geneNfkb1, ENSMUSG00000045520, Slc39a8, LOC100039350, LOC383923, Bank1, LOC100039477, LOC668868
Downstream geneLOC668870, LOC100039447, Emcn, EG229862, Ddit4l, LOC668874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022O11.bB6Ng01-022O11.g
ACCDH854977DH854978
length968955
definitionDH854977|Mus musculus domesticus DNA, BAC clone: B6Ng01-022O11, 5' end.DH854978|Mus musculus domesticus DNA, BAC clone: B6Ng01-022O11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,430,325 - 136,431,285)(136,272,911 - 136,273,873)
sequence
gaattcttttaattgaacttccctgaaacaaatgctgatagacacaatga
ttgcgaatacctctgcaagctatagttacctaaaaacgactcattgttca
acataaagaccaatcattgaaaaatctagaactctctgatgtctcaagga
gttacttggctctagaatgcctatagtaacatatatggtaaatttgccat
tggttatatgaaagtatatttccagaagaaatacaaaaaaatcacatttg
gactgttacgagggatccaaaattgaaaaactaaagatgctgttatgtgc
tatgtacataacacacaagaggagttggggagatggctcaatggttaaga
gcacttgctgcagtgccaaaggacccaagttcagttcccaaaacccacat
ctggaaacaaacaaggtcctgaaactccagctccaggggatctgacagct
ttttctggcctctgagcactcacactcacatgacatacactgacactggc
acacatatatacacatgaaataaaaacacaacttatgaaaaacacaagaa
actacagcaaaaagctaatatgaaatcaatgccctttctcttttcttctc
taaaacatgttataaatgaaaactgaataaagtctgtcttagaccaagtt
atttaataaagaaattttcaacacttgaagcaaggcaatcaatttggaag
ttgttgtgatcaagataaaagttcgaagcatgagaataagagaaaagtga
ggagaattggaaaatccatgcttgctttcaacaaaaatatttatggaaat
gaaacagtgctacataatatggccaggatattggtgttaaaattcagtgg
gcaaagtggtaatgaaggatgtgaatttaagtggtaaaacagaaatgggc
tgacttactctggcaagactgggatgcatctgtgtactttctgaacccaa
ggtttatgggaatttttt
gaattcaaaacaacttggtttgttgattcttcttaagaaggaagcagatg
gcagccagccaagcctcagaattaaaagtcacaggaagctacaaatcagt
gcaaacaaggaaaccttccaaagcctgaaatcggagaagccctcccccac
cacccccgactttgatgatcagcttataatatgatcatcaggagcagcct
agtacttccgagcatcagcatttgggacatctagtagttgctcgtactgg
cctgagtaagccttttatttaccaactccatcctctacccagcatcccaa
tttcccctttatgcgcatttgggcatttagaaagctgaccattcagaaag
cacacagttgggcattgttttcaagctcactgctgctcctgacagaatta
ttgaggaagcattatgcaaatctattgtttacaaaggccataaaaccatc
tggcccaagaggttcactttctgtagctgacttctggacaccagcatggg
tttaacttcctctgtccttcctattctggctgccaagccactgttgacaa
aacacaggtgatttgtttctcatttctgaccaggcttccagtcctgcctc
tgcttatttaacttttgttctagttttctgtatatcactctctccgcctc
tcttacctggggcagtttccacactttccctgaggtttcctttggagacc
ttctgtggatttccagacagagtcgaacatttataactacatctcagaga
cacaaagcacatttgtagaaagtcataaaaacgaccttggtaataaaccc
cagggtgtggctgttacacacagatggcagcttctaagcgctcacaatca
tgggctgcccaacggtgatcccagtttcaactgagaccttgggaagtaaa
atttgttgctactgagtagtctataatggatttctttcacctcactgata
aaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_136430325_136431285
seq2: B6Ng01-022O11.b_46_1004 (reverse)

seq1  CCATAAGCCTTGGGTGTCAGAAAGTACACAGATGCATCCCAGTCTTGCCA  50
      |||||| |||||||| ||||||||||||||||||||||||||||||||||
seq2  CCATAAACCTTGGGT-TCAGAAAGTACACAGATGCATCCCAGTCTTGCCA  49

seq1  GAGTAAGGTCAGCCCAATTCTGTTTTACCACTTAAATTCACATCCTTCAT  100
      |||||| ||||||||| |||||||||||||||||||||||||||||||||
seq2  GAGTAA-GTCAGCCCATTTCTGTTTTACCACTTAAATTCACATCCTTCAT  98

seq1  TACCACTTTGCCCACTGAATTTTAACACCAATATCCTGGCCATATTATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACTTTGCCCACTGAATTTTAACACCAATATCCTGGCCATATTATGT  148

seq1  AGCACTGTTTCATTTCCATAAATATTTTTGTTGAAAGCAAGCATGGATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGTTTCATTTCCATAAATATTTTTGTTGAAAGCAAGCATGGATTT  198

seq1  TCCAATTCTCCTCACTTTTCTCTTATTCTCATGCTTCGAACTTTTATCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATTCTCCTCACTTTTCTCTTATTCTCATGCTTCGAACTTTTATCTT  248

seq1  GATCACAACAACTTCCAAATTGATTGCCTTGCTTCAAGTGTTGAAAATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACAACAACTTCCAAATTGATTGCCTTGCTTCAAGTGTTGAAAATTT  298

seq1  CTTTATTAAATAACTTGGTCTAAGACAGACTTTATTCAGTTTTCATTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTAAATAACTTGGTCTAAGACAGACTTTATTCAGTTTTCATTTAT  348

seq1  AACATGTTTTAGAGAAGAAAAGAGAAAGGGCATTGATTTCATATTAGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGTTTTAGAGAAGAAAAGAGAAAGGGCATTGATTTCATATTAGCTT  398

seq1  TTTGCTGTAGTTTCTTGTGTTTTTCATAAGTTGTGTTTTTATTTCATGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGTAGTTTCTTGTGTTTTTCATAAGTTGTGTTTTTATTTCATGTG  448

seq1  TATATATGTGTGCCAGTGTCAGTGTATGTCATGTGAGTGTGAGTGCTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATGTGTGCCAGTGTCAGTGTATGTCATGTGAGTGTGAGTGCTCAG  498

seq1  AGGCCAGAAAAAGCTGTCAGATCCCCTGGAGCTGGAGTTTCAGGACCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGAAAAAGCTGTCAGATCCCCTGGAGCTGGAGTTTCAGGACCTTG  548

seq1  TTTGTTTCCAGATGTGGGTTTTGGGAACTGAACTTGGGTCCTTTGGCACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTCCAGATGTGGGTTTTGGGAACTGAACTTGGGTCCTTTGGCACT  598

seq1  GCAGCAAGTGCTCTTAACCATTGAGCCATCTCCCCAACTCCTCTTGTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAAGTGCTCTTAACCATTGAGCCATCTCCCCAACTCCTCTTGTGTG  648

seq1  TTATGTACATAGCACATAACAGCATCTTTAGTTTTTCAATTTTGGATCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTACATAGCACATAACAGCATCTTTAGTTTTTCAATTTTGGATCCC  698

seq1  TCGTAACAGTCCAAATGTGATTTTTTTGTATTTCTTCTGGAAATATACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTAACAGTCCAAATGTGATTTTTTTGTATTTCTTCTGGAAATATACTT  748

seq1  TCATATAACCAATGGCAAATTTACCATATATGTTACTATAGGCATTCTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATAACCAATGGCAAATTTACCATATATGTTACTATAGGCATTCTAG  798

seq1  AGCCAAGTAACTCCTTGAGACATCAGAGAGTTCTAGATTTTTCAATGATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGTAACTCCTTGAGACATCAGAGAGTTCTAGATTTTTCAATGATT  848

seq1  GGTCTTTATGTTGAACAATGAGTCGTTTTTAGGTAACTATAGCTTGCAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTTATGTTGAACAATGAGTCGTTTTTAGGTAACTATAGCTTGCAGA  898

seq1  GGTATTCGCAATCATTGTGTCTATCAGCATTTGTTTCAGGGAAGTTCAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTCGCAATCATTGTGTCTATCAGCATTTGTTTCAGGGAAGTTCAAT  948

seq1  TAAAAGAATTC  961
      |||||||||||
seq2  TAAAAGAATTC  959

seq1: chr3_136272911_136273873
seq2: B6Ng01-022O11.g_69_1023

seq1  GAATTCAAAACAACTTGGTTTGTTGATTCTTCTTAAGAAGGAAGCAGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAACAACTTGGTTTGTTGATTCTTCTTAAGAAGGAAGCAGATG  50

seq1  GCAGCCAGCCAAGCCTCAGAATTAAAAGTCACAGGAAGCTACAAATCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCAGCCAAGCCTCAGAATTAAAAGTCACAGGAAGCTACAAATCAGT  100

seq1  GCAAACAAGGAAACCTTCCAAAGCCTGAAATCGGAGAAGCCCTCCCCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACAAGGAAACCTTCCAAAGCCTGAAATCGGAGAAGCCCTCCCCCAC  150

seq1  CACCCCCGACTTTGATGATCAGCTTATAATATGATCATCAGGAGCAGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCCGACTTTGATGATCAGCTTATAATATGATCATCAGGAGCAGCCT  200

seq1  AGTACTTCCGAGCATCAGCATTTGGGACATCTAGTAGTTGCTCGTACTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTTCCGAGCATCAGCATTTGGGACATCTAGTAGTTGCTCGTACTGG  250

seq1  CCTGAGTAAGCCTTTTATTTACCAACTCCATCCTCTACCCAGCATCCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTAAGCCTTTTATTTACCAACTCCATCCTCTACCCAGCATCCCAA  300

seq1  TTTCCCCTTTATGCGCATTTGGGCATTTAGAAAGCTGACCATTCAGAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCTTTATGCGCATTTGGGCATTTAGAAAGCTGACCATTCAGAAAG  350

seq1  CACACAGTTGGGCATTGTTTTCAAGCTCACTGCTGCTCCTGACAGAATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGTTGGGCATTGTTTTCAAGCTCACTGCTGCTCCTGACAGAATTA  400

seq1  TTGAGGAAGCATTATGCAAATCTATTGTTTACAAAGGCCATAAAACCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGAAGCATTATGCAAATCTATTGTTTACAAAGGCCATAAAACCATC  450

seq1  TGGCCCAAGAGGTTCACTTTCTGTAGCTGACTTCTGGACACCAGCATGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCAAGAGGTTCACTTTCTGTAGCTGACTTCTGGACACCAGCATGGG  500

seq1  TTTAACTTCCTCTGTCCTTCCTATTCTGGCTGCCAAGCCACTGTTGACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTTCCTCTGTCCTTCCTATTCTGGCTGCCAAGCCACTGTTGACAA  550

seq1  AACACAGGTGATTTGTTTCTCATTTCTGACCAGGCTTCCAGTCCTGCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGGTGATTTGTTTCTCATTTCTGACCAGGCTTCCAGTCCTGCCTC  600

seq1  TGCTTATTTAAC-TTTGTTCTAG-TTTCTGTATATCACTCTCTCCGCCTC  648
      |||||||||||| |||||||||| ||||||||||||||||||||||||||
seq2  TGCTTATTTAACTTTTGTTCTAGTTTTCTGTATATCACTCTCTCCGCCTC  650

seq1  TCTTACCTGGGGCAGTTTCCACACTTTCCCTGAGGTTTCCTTTGGAGACC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACCTGGGGCAGTTTCCACACTTTCCCTGAGGTTTCCTTTGGAGACC  700

seq1  TTCTGTGGATTTCCAGACAGAGTCGAACATTTATAACTACATCTCAGAGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGGATTTCCAGACAGAGTCGAACATTTATAACTACATCTCAGAGA  750

seq1  CACAAAGCACATTTGTAGAAAGTCATAAAAACGACCTTGGTAATAAACCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGCACATTTGTAGAAAGTCATAAAAACGACCTTGGTAATAAACCC  800

seq1  CAGGGTGTGGCTGTTACACACAGATGGCAGCTTCTAAGCGCTCACAATTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CAGGGTGTGGCTGTTACACACAGATGGCAGCTTCTAAGCGCTCACAA-TC  849

seq1  ATGGGCTGCCCAACGGTGATCCACAGTTTCAACTGCAGACCTTGGGAAGT  898
      |||||||||||||||||||||| |||||||||||| ||||||||||||||
seq2  ATGGGCTGCCCAACGGTGATCC-CAGTTTCAACTG-AGACCTTGGGAAGT  897

seq1  AAGATTTTGTTGCTACTGAGTAAGTCTAATAAATGGATTTCATTTCAACA  948
      || | |||||||||||||||| ||||||   |||||||||| |||| || 
seq2  AA-AATTTGTTGCTACTGAGT-AGTCTA--TAATGGATTTC-TTTC-ACC  941

seq1  TCACTGTATAAAATT  963
      |||||| ||||||||
seq2  TCACTG-ATAAAATT  955