BAC Information

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BAC

Clone NameB6Ng01-022P04
Chromosome3 (Build37)
Map Location 119,197,865 - 119,310,163
singlet/doubletdoublet
Overlap geneLOC100043275
Upstream geneDpyd
Downstream geneLOC100043278, Ptbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022P04.bB6Ng01-022P04.g
ACCDH855009DH855010
length1,151952
definitionDH855009|Mus musculus domesticus DNA, BAC clone: B6Ng01-022P04, 5' end.DH855010|Mus musculus domesticus DNA, BAC clone: B6Ng01-022P04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,197,865 - 119,199,032)(119,309,210 - 119,310,163)
sequence
gaattcttcagtcagaaacaactccagttgtcaggctcggtttgtagtac
ttcacaaatttgcatatcatggcatatgctctatgagatgacaggcaact
cttttccaatctgaatctggacctcctagaactcaggtccagaaggcttc
ttgaacgtttgtagcacaagaaatgtccagactctgaaggaagttcacta
gaactgatggaaactttttagaggagagatgaattgacagcacacagttc
tataaaagggtcatttgtcactttacatttggtactcgacatctggttgt
atcaaggtctcatatcacacttctcgacatgacacttgtccagtattttc
attgtgatatccgtcaacaacctaccttctctggctgagagagagagaga
gagagagagagagagagagagagagaggaaaaaaaagagagaggcttcaa
gtatgtcagatttcctaagcttatatctgagaaatccacagtccctcatc
tggctttatctcctatcatgtaatcaatttcagttttcttttcattaggt
gccaaaggccaggtaaactatttaacctgactgtcttcatagaaagcagc
agcaagcattttttttccacagccaaatcttctttacacagtgtgcccag
cttctcaggtcctttaacccaagaaaatgcctcctgcagtgctagcttat
gatcttttgttccaaactgttaaacatataggatagacacgatggtacat
gactttaatctaagcactcacttaggagacagacaggaactggtagattt
ctgtgggttcaaggccctcctggtcttcagagtgagatctaagctgtggc
tgcttctatctaaaaacaaaggggagccatttcatcacttcacaaaagga
gttgggaggtcgtgccatcattcaaaataacccctgctcgtgtcattttt
ggcttctgtcctcatgggaaaataccatctatagtgtacagagccggaga
aaaagcaagaaaaaacttaagcaatcagtgttaagtgaaagaagaagtga
ctttagagaagttgtatgctaagggtatatatggccttgtttcttaaatt
taattacgtgtaaaggaaatagagaatagttagaggttgctttgacgcta
g
gaattctttctgtctcccagatgtcccacctcctattttctgcctaagac
attagccctcatttattattgaccactgccaggtccatccagacataaga
tgttctctctacaggagacattcacctaagttctgacattctcctcccgg
tgagttcatattgggatatgaacaagcaccccactctctcattgctgggg
attcacctgaaaccatgcttcctccaccatgactgactgttttctttcca
accaagagccaaaataaattcttcctcatttaagttttctttatgaggta
gttagttgcagcagtgagtaaagtaactaagcctaaaagcaacacaaaac
ttcccatagccagaaggcagtccttaaattgacttgagttcagagacctt
gttcaattttatttatgcaagattctttcccaagatacttcatgtatcta
gaatttaaatatggcttttattcttgggatccgtttccctgcctgttctc
acaagagagagagagagagagagagagagagagagagagagagagagaga
gagagagagagagagagagagagagaaattgttctttaagcactaagttc
ttagatttatggattcaataaaacacagtgcctcttcaattttttcaggg
cttgtgctgatttatatgggctttgctggcacaaaaaattagattaaaaa
ttttttattgaatcttgtctgaaatgcttaaggttgaagggagacttaaa
aaatgaaaagaaagaaaaaaattcattcttctattctctcagtggatctg
gcttttgaaacaacagaacctgtgcacactaactaggcacttgttttttc
tggacacctcccactcctccagcctgttagaggaatagattctctgtgcc
attcatatgctcataaaactctggactggatgctgcagggggtggttgtc
tc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_119197865_119199032
seq2: B6Ng01-022P04.b_47_1197

seq1  GAATTCTTCAGTCAGAAACAACTCCAGTTGTCAGGCTCGGTTTGTAGTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAGTCAGAAACAACTCCAGTTGTCAGGCTCGGTTTGTAGTAC  50

seq1  TTCACAAATTTGCATATCATGGCATATGCTCTATGAGATGACAGGCAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAAATTTGCATATCATGGCATATGCTCTATGAGATGACAGGCAACT  100

seq1  CTTTTCCAATCTGAATCTGGACCTCCTAGAACTCAGGTCCAGAAGGCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCAATCTGAATCTGGACCTCCTAGAACTCAGGTCCAGAAGGCTTC  150

seq1  TTGAACGTTTGTAGCACAAGAAATGTCCAGACTCTGAAGGAAGTTCACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACGTTTGTAGCACAAGAAATGTCCAGACTCTGAAGGAAGTTCACTA  200

seq1  GAACTGATGGAAACTTTTTAGAGGAGAGATGAATTGACAGCACACAGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGATGGAAACTTTTTAGAGGAGAGATGAATTGACAGCACACAGTTC  250

seq1  TATAAAAGGGTCATTTGTCACTTTACATTTGGTACTCGACATCTGGTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAGGGTCATTTGTCACTTTACATTTGGTACTCGACATCTGGTTGT  300

seq1  ATCAAGGTCTCATATCACACTTCTCGACATGACACTTGTCCAGTATTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGGTCTCATATCACACTTCTCGACATGACACTTGTCCAGTATTTTC  350

seq1  ATTGTGATATCCGTCAACAACCTACCTTCTCTGGCTGAGAGAGAGAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGATATCCGTCAACAACCTACCTTCTCTGGCTGAGAGAGAGAGAGA  400

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGGAAAAAAAAGAGAGAGGCTTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGGAAAAAAAAGAGAGAGGCTTCAA  450

seq1  GTATGTCAGATTTCCTAAGCTTATATCTGAGAAATCCACAGTCCCTCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTCAGATTTCCTAAGCTTATATCTGAGAAATCCACAGTCCCTCATC  500

seq1  TGGCTTTATCTCCTATCATGTAATCAATTTCAGTTTTCTTTTCATTAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTATCTCCTATCATGTAATCAATTTCAGTTTTCTTTTCATTAGGT  550

seq1  GCCAAAGGCCAGGTAAACTATTTAACCTGACTGTCTTCATAGAAAGCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAGGCCAGGTAAACTATTTAACCTGACTGTCTTCATAGAAAGCAGC  600

seq1  AGCAAGCATTTTTTTTCCACAGCCAAATCTTCTTTACACAGTGTGCCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGCATTTTTTTTCCACAGCCAAATCTTCTTTACACAGTGTGCCCAG  650

seq1  CTTCTCAGGTCCTTTAACCCAAGAAAATGCCTCCTGCAGTGCTAGCTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCAGGTCCTTTAACCCAAGAAAATGCCTCCTGCAGTGCTAGCTTAT  700

seq1  GATCTTTTGTTCCAAACTGTTAAACATATAGGATAGACACGATGGTACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTTTGTTCCAAACTGTTAAACATATAGGATAGACACGATGGTACAT  750

seq1  GACTTTAATCTAAGCACTCACTTAGGAGACAGACAGGAACTGGTAGATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTAATCTAAGCACTCACTTAGGAGACAGACAGGAACTGGTAGATTT  800

seq1  CTGTGGGTTCAAGGCCCTCCTGGTCTTCAGAGTGAGATCTAAGCTGTGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGTTCAAGGCCCTCCTGGTCTTCAGAGTGAGATCTAAGCTGTGGC  850

seq1  TGC-TCTATCTAAAAAACAAAGGGGAGCCAATTCATCACTTCACAAAAGG  899
      ||| ||||||| |||||||||||||||||| |||||||||||||||||||
seq2  TGCTTCTATCT-AAAAACAAAGGGGAGCCATTTCATCACTTCACAAAAGG  899

seq1  AGTTGGGAGGTCGTGCCATCATCCAAAATAACCCCTGCTCGTGTCATTTT  949
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGTTGGGAGGTCGTGCCATCATTCAAAATAACCCCTGCTCGTGTCATTTT  949

seq1  TGGCTTCTGTCCTCATGGGAAAATACCATCTATAAGTGTACAGAGCCGGG  999
      ||||||||||||||||||||||||||||||||| ||||||||||||| ||
seq2  TGGCTTCTGTCCTCATGGGAAAATACCATCTAT-AGTGTACAGAGCC-GG  997

seq1  AGAAAAAGGCAAGAAAAAAACTTAGGCAAATCAGTGTTAAGTGAAAG-AG  1048
      ||||||| ||||| |||||||||| || ||||||||||||||||||| ||
seq2  AGAAAAA-GCAAG-AAAAAACTTAAGC-AATCAGTGTTAAGTGAAAGAAG  1044

seq1  AAGTGACTTTAGAGAAGTTAGTATGCTAAGGGGTATATATGGCTTGTTTT  1098
      ||||||||||||||||||| ||||||||| ||||||||||||| |  |||
seq2  AAGTGACTTTAGAGAAGTT-GTATGCTAA-GGGTATATATGGCCTTGTTT  1092

seq1  CTTATATTTAAATTTTACGTGTAAAAGGAAAATAAGAGAAATTAAGGTTA  1148
      |||| ||||||   |||||||| ||||||||   ||||||  ||  ||||
seq2  CTTAAATTTAA---TTACGTGT-AAAGGAAA--TAGAGAA--TA--GTTA  1132

seq1  GAGGTGGGTTTTGACGCTAG  1168
      |||||  | |||||||||||
seq2  GAGGT-TGCTTTGACGCTAG  1151

seq1: chr3_119309210_119310163
seq2: B6Ng01-022P04.g_67_1018 (reverse)

seq1  GAGACAACCACACCCTGCAGCATCCAGTCCAGAGTTCTGATGAGCATATG  50
      ||||||||||| |||||||||||||||||||||||| | |||||||||||
seq2  GAGACAACCACCCCCTGCAGCATCCAGTCCAGAGTT-TTATGAGCATATG  49

seq1  AATGGCACAGAGAATCTATTCCTCTAACAGGCTGGATGGAGTGGGAGGTG  100
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AATGGCACAGAGAATCTATTCCTCTAACAGGCTGGA-GGAGTGGGAGGTG  98

seq1  TCCAGAAATAAACAAGTTGCCTAGTTAGTGTGCACAGGTTCTGTTGTTTC  150
      |||||||| ||||||| |||||||||||||||||||||||||||||||||
seq2  TCCAGAAA-AAACAAG-TGCCTAGTTAGTGTGCACAGGTTCTGTTGTTTC  146

seq1  -AAAGCCAGATCCACTGAGAGAATTAGAAGAATGAATTTTTTTCTTTCTT  199
       |||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AAAAGCCAGATCCACTGAGAGAA-TAGAAGAATGAATTTTTTTCTTTCTT  195

seq1  TCATTTTTTTAAGTCTCCCTTCAACTTTAAGCATTTCAGACAAGATTCAA  249
      |   ||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTCATTTTTTAAGTCTCCCTTCAACCTTAAGCATTTCAGACAAGATTCAA  245

seq1  TAAAAAATTTTTAATCTAA-TTTTTGTGCCAGCAAAGCCCATATAAATCA  298
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TAAAAAATTTTTAATCTAATTTTTTGTGCCAGCAAAGCCCATATAAATCA  295

seq1  GCACAAGCCCTG-AAAAATTGAAGAGGCACTGTGTTTTATTGAATCCATA  347
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GCACAAGCCCTGAAAAAATTGAAGAGGCACTGTGTTTTATTGAATCCATA  345

seq1  AATCTAAGAACTTAGTGCTTAAAGAACAATTTCTCTCTCTCTCTCTCTCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAAGAACTTAGTGCTTAAAGAACAATTTCTCTCTCTCTCTCTCTCT  395

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  445

seq1  CTCTTGTGAGAACAGGCAGGGAAACGGATCCCAAGAATAAAAGCCATATT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGTGAGAACAGGCAGGGAAACGGATCCCAAGAATAAAAGCCATATT  495

seq1  TAAATTCTAGATACATGAAGTATCTTGGGAAAGAATCTTGCATAAATAAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCTAGATACATGAAGTATCTTGGGAAAGAATCTTGCATAAATAAA  545

seq1  ATTGAACAAGGTCTCTGAACTCAAGTCAATTTAAGGACTGCCTTCTGGCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAACAAGGTCTCTGAACTCAAGTCAATTTAAGGACTGCCTTCTGGCT  595

seq1  ATGGGAAGTTTTGTGTTGCTTTTAGGCTTAGTTACTTTACTCACTGCTGC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAAGTTTTGTGTTGCTTTTAGGCTTAGTTACTTTACTCACTGCTGC  645

seq1  AACTAACTACCTCATAAAGAAAACTTAAATGAGGAAGAATTTATTTTGGC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAACTACCTCATAAAGAAAACTTAAATGAGGAAGAATTTATTTTGGC  695

seq1  TCTTGGTTGGAAAGAAAACAGTCAGTCATGGTGGAGGAAGCATGGTTTCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTTGGAAAGAAAACAGTCAGTCATGGTGGAGGAAGCATGGTTTCA  745

seq1  GGTGAATCCCCAGCAATGAGAGAGTGGGGTGCTTGTTCATATCCCAATAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAATCCCCAGCAATGAGAGAGTGGGGTGCTTGTTCATATCCCAATAT  795

seq1  GAACTCACCGGGAGGAGAATGTCAGAACTTAGGTGAATGTCTCCTGTAGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCACCGGGAGGAGAATGTCAGAACTTAGGTGAATGTCTCCTGTAGA  845

seq1  GAGAACATCTTATGTCTGGATGGACCTGGCAGTGGTCAATAATAAATGAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACATCTTATGTCTGGATGGACCTGGCAGTGGTCAATAATAAATGAG  895

seq1  GGCTAATGTCTTAGGCAGAAAATAGGAGGTGGGACATCTGGGAGACAGAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAATGTCTTAGGCAGAAAATAGGAGGTGGGACATCTGGGAGACAGAA  945

seq1  AGAATTC  954
      |||||||
seq2  AGAATTC  952