BAC Information

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BAC

Clone NameB6Ng01-023C23
Chromosome3 (Build37)
Map Location 82,475,974 - 82,582,705
singlet/doubletdoublet
Overlap geneLOC100041940
Upstream geneLOC100041901, Ctso, Tdo2, Accn5, Gucy1b3, Gucy1a3, Mtap9, Npy2r
Downstream geneEG633285, Lrat, Fgg, Fga, Fgb, Plrg1, EG627094, Dchs2, 1700028M03Rik, LOC100042007, LOC100042091, Sfrp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023C23.bB6Ng01-023C23.g
ACCDH855175DH855176
length9431,041
definitionDH855175|Mus musculus domesticus DNA, BAC clone: B6Ng01-023C23, 5' end.DH855176|Mus musculus domesticus DNA, BAC clone: B6Ng01-023C23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,581,760 - 82,582,705)(82,475,974 - 82,477,023)
sequence
gaattcagttcccagtacctccagctcagagggtctgatgcccagttctg
gcttctgttgacatctgtacacatgtgaacatatatacacacctatactc
cccacagagaaatagaggcataaataataaaaatacatccttaaacaaac
aacagtacttgaaaattctagttttttgcatcctcttcaggatttgatag
cagtattggcaaggagcccctcttcccaaattcaagatatacagtggcat
ctcactgtgggtttctgtaagttttcccattagctaaggactatcacatc
ttcccacttgatcatctgttgtctctttccttgtttctgtataaagttta
ctcagatatttttggccatttgtatttgactttgtcttttcatgttgttg
aattttaagaatattaaattttttatgtttttatcagacacattatttat
tgtgataactacttctatcagcctgggtttatcttttttcctatttatta
cctgtctttcttggaaagtaacattgatttacttatttcaattggcatgt
aaaatttgtacacatttacgaagaatcacatgaaatctcagtatttgtgt
tctttttccattagaacaaaaattctaagtccagtttagtacatttttat
aatttggtcattctttacttgttgtgtataagaagtctgtgcttattcag
agtcaaaaagaagatctgtcatttctacagagattttattgacttacttt
ttttttttttttttggtttttcaagacagggtttctctgtgtagccctgg
ctgtcctggaactcactctgtagaccaggctggcctcgaactcagaaatc
tgcctgcctctgcctccctcgtgctgggattaaaggcgtgccaccacgcc
cggctttgacttcattttatgttcaacctatgattcatcttga
gaattcctgataaggagacatggtaaacccagtctctttctagagggtca
gaggatgagtagctgtggttcttggagatggcatcaaaggtggcactggc
aatgttgcccaggatgcagcccttggctaatgagtagcagtcatcagtac
tggccagcagccactgcttcttgggcacaggggcagagacagatgctagt
gcctctgggtgcaggggtgagatgcaccaggacagccaccgcagcctgtc
accttgcctggggcttattcccccagcagcccctccgcacagggatgatg
gaaagcttgacccaccaagatgatggaccctcggatggcagcagctacct
acttggagcacctaacaccaaaaccaacatgacctttgcagtccccaata
gagacaaaacctttgcagtccccaatagagacaagaacctggtcttctgg
ccagcccaaatctacatctgcactggcatgatctttagaacctcattgtt
cagggttgtgcccataacatcatgcccctaagatcatgaactaaataact
aactctttctaacttaagagataaataatcaagactaaaacaaataaact
tgaatattaaagtaagttccatatagatagtgaaatataacagatataat
ttaggcttgagtaagaatttttaatttagtctatgtctaggttgtcatca
ctttttcttctcttgtggtctccattttaattccatcacacacacacatg
tatgcactcacacctatgtgtgtgtgtaaatatatagtgtatgtacatgt
acactccacatataatagagaacatgtactattgttttttacaaggtctc
tgttatctcacctaatgttatctcacttaatgatggtatttccatatcca
tccattttctcacaaatttcatgattttattcattttatgactgataaat
ttcattttatgtatagaatgtattttgtttcatcatttgtaataaatata
taatgtggttgtgtcctgtcttgggactagtgggctaacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_82581760_82582705
seq2: B6Ng01-023C23.b_42_984 (reverse)

seq1  TCAAGATGAATCATAGGTTGAAACATAAAATGTAAGTCAAAGCCGGGCGT  50
      |||||||||||||||||||| ||||||||||| |||||||||||||||||
seq2  TCAAGATGAATCATAGGTTG-AACATAAAATG-AAGTCAAAGCCGGGCGT  48

seq1  GGTGGGCACGCCTTTAATCCCAGCACGAGGGAGGCAGAGGCAGGCAGATT  100
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGT-GGCACGCCTTTAATCCCAGCACGAGGGAGGCAGAGGCAGGCAGATT  97

seq1  TCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAG  147

seq1  GGCTACACAGAGAAACCCTGTCTTGAAAAACCAAAAAAAAAAAAAAAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACACAGAGAAACCCTGTCTTGAAAAACCAAAAAAAAAAAAAAAAAG  197

seq1  TAAGTCAATAAAATCTCTGTAGAAATGACAGATCTTCTTTTTGACTCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCAATAAAATCTCTGTAGAAATGACAGATCTTCTTTTTGACTCTGA  247

seq1  ATAAGCACAGACTTCTTATACACAACAAGTAAAGAATGACCAAATTATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCACAGACTTCTTATACACAACAAGTAAAGAATGACCAAATTATAA  297

seq1  AAATGTACTAAACTGGACTTAGAATTTTTGTTCTAATGGAAAAAGAACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTACTAAACTGGACTTAGAATTTTTGTTCTAATGGAAAAAGAACAC  347

seq1  AAATACTGAGATTTCATGTGATTCTTCGTAAATGTGTACAAATTTTACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTGAGATTTCATGTGATTCTTCGTAAATGTGTACAAATTTTACAT  397

seq1  GCCAATTGAAATAAGTAAATCAATGTTACTTTCCAAGAAAGACAGGTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATTGAAATAAGTAAATCAATGTTACTTTCCAAGAAAGACAGGTAAT  447

seq1  AAATAGGAAAAAAGATAAACCCAGGCTGATAGAAGTAGTTATCACAATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGGAAAAAAGATAAACCCAGGCTGATAGAAGTAGTTATCACAATAA  497

seq1  ATAATGTGTCTGATAAAAACATAAAAAATTTAATATTCTTAAAATTCAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGTGTCTGATAAAAACATAAAAAATTTAATATTCTTAAAATTCAAC  547

seq1  AACATGAAAAGACAAAGTCAAATACAAATGGCCAAAAATATCTGAGTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGAAAAGACAAAGTCAAATACAAATGGCCAAAAATATCTGAGTAAA  597

seq1  CTTTATACAGAAACAAGGAAAGAGACAACAGATGATCAAGTGGGAAGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATACAGAAACAAGGAAAGAGACAACAGATGATCAAGTGGGAAGATG  647

seq1  TGATAGTCCTTAGCTAATGGGAAAACTTACAGAAACCCACAGTGAGATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGTCCTTAGCTAATGGGAAAACTTACAGAAACCCACAGTGAGATGC  697

seq1  CACTGTATATCTTGAATTTGGGAAGAGGGGCTCCTTGCCAATACTGCTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTATATCTTGAATTTGGGAAGAGGGGCTCCTTGCCAATACTGCTAT  747

seq1  CAAATCCTGAAGAGGATGCAAAAAACTAGAATTTTCAAGTACTGTTGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCTGAAGAGGATGCAAAAAACTAGAATTTTCAAGTACTGTTGTTT  797

seq1  GTTTAAGGATGTATTTTTATTATTTATGCCTCTATTTCTCTGTGGGGAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAGGATGTATTTTTATTATTTATGCCTCTATTTCTCTGTGGGGAGT  847

seq1  ATAGGTGTGTATATATGTTCACATGTGTACAGATGTCAACAGAAGCCAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTGTGTATATATGTTCACATGTGTACAGATGTCAACAGAAGCCAGA  897

seq1  ACTGGGCATCAGACCCTCTGAGCTGGAGGTACTGGGAACTGAATTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGCATCAGACCCTCTGAGCTGGAGGTACTGGGAACTGAATTC  943

seq1: chr3_82475974_82477023
seq2: B6Ng01-023C23.g_65_1105

seq1  GAATTCCTGATAAGGAGACATGGTAAACCCAGTCTCTTTCTAGAGGGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGATAAGGAGACATGGTAAACCCAGTCTCTTTCTAGAGGGTCA  50

seq1  GAGGATGAGTAGCTGTGGTTCTTGGAGATGGCATCAAAGGTGGCACTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATGAGTAGCTGTGGTTCTTGGAGATGGCATCAAAGGTGGCACTGGC  100

seq1  AATGTTGCCCAGGATGCAGCCCTTGGCTAATGAGTAGCAGTCATCAGTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTGCCCAGGATGCAGCCCTTGGCTAATGAGTAGCAGTCATCAGTAC  150

seq1  TGGCCAGCAGCCACTGCTTCTTGGGCACAGGGGCAGAGACAGATGCTAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAGCAGCCACTGCTTCTTGGGCACAGGGGCAGAGACAGATGCTAGT  200

seq1  GCCTCTGGGTGCAGGGGTGAGATGCACCAGGACAGCCACCGCAGCCTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGGGTGCAGGGGTGAGATGCACCAGGACAGCCACCGCAGCCTGTC  250

seq1  ACCTTGCCTGGGGCTTATTCCCCCAGCAGCCCCTCCGCACAGGGATGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGCCTGGGGCTTATTCCCCCAGCAGCCCCTCCGCACAGGGATGATG  300

seq1  GAAAGCTTGACCCACCAAGATGATGGACCCTCGGATGGCAGCAGCTACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCTTGACCCACCAAGATGATGGACCCTCGGATGGCAGCAGCTACCT  350

seq1  ACTTGGAGCACCTAACACCAAAACCAACATGACCTTTGCAGTCCCCAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGAGCACCTAACACCAAAACCAACATGACCTTTGCAGTCCCCAATA  400

seq1  GAGACAAAACCTTTGCAGTCCCCAATAGAGACAAGAACCTGGTCTTCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAAAACCTTTGCAGTCCCCAATAGAGACAAGAACCTGGTCTTCTGG  450

seq1  CCAGCCCAAATCTACATCTGCACTGGCATGATCTTTAGAACCTCATTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCAAATCTACATCTGCACTGGCATGATCTTTAGAACCTCATTGTT  500

seq1  CAGGGTTGTGCCCATAACATCATGCCCCTAAGATCATGAACTAAATAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTGTGCCCATAACATCATGCCCCTAAGATCATGAACTAAATAACT  550

seq1  AACTCTTTCTAACTTAAGAGATAAATAATCAAGACTAAAACAAATAAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTTCTAACTTAAGAGATAAATAATCAAGACTAAAACAAATAAACT  600

seq1  TGAATATTAAAGTAAGTTCCATATAGATAGTGAAATATAACAGATATAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATTAAAGTAAGTTCCATATAGATAGTGAAATATAACAGATATAAT  650

seq1  TTAGGCTTGAGTAAGAATTTTTAATTTAGTCTATGTCTAGGTTGTCATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCTTGAGTAAGAATTTTTAATTTAGTCTATGTCTAGGTTGTCATCA  700

seq1  CTTTTTCTTCTCTTGTGGTCTCCATTTTAATTCCATCACACACACACATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCTTCTCTTGTGGTCTCCATTTTAATTCCATCACACACACACATG  750

seq1  TATGCACTCACACCTATGTGTGTGTGTAAATATATAGTGTATGTACATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCACTCACACCTATGTGTGTGTGTAAATATATAGTGTATGTACATGT  800

seq1  ACACTCCACATATAATAGAGAACATGTACTATTGTTTTTTACAAGGTCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCCACATATAATAGAGAACATGTACTATTGTTTTTTACAAGGTCTC  850

seq1  TGTTATCTCACCTAATGTTATCTCACTTAATGATGGTATTTCCATATCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATCTCACCTAATGTTATCTCACTTAATGATGGTATTTCCATATCCA  900

seq1  TCCATTTTCTCACAAATTTCATGATTTTATTCATTTTATGACTGAATAAA  950
      |||||||||||||||||||||||||||||||||||||||||||||   ||
seq2  TCCATTTTCTCACAAATTTCATGATTTTATTCATTTTATGACTGA--TAA  948

seq1  ATTTCATTTTATGTATAGAATGTATTTTTGTTTCCAATCATTTGTTAATA  1000
      |||||||||||||||||||||||| |||||||||  |||||||| |||||
seq2  ATTTCATTTTATGTATAGAATGTA-TTTTGTTTC--ATCATTTG-TAATA  994

seq1  AATATATAATGTGGTTGTGTTCCTTGGTCTTGGGACTAGTGGGCTAACAA  1050
      ||||||||||||||||||| ||||  ||||||||||||||||||||||||
seq2  AATATATAATGTGGTTGTG-TCCT--GTCTTGGGACTAGTGGGCTAACAA  1041