BAC Information

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BAC

Clone NameB6Ng01-023F06
Chromosome3 (Build37)
Map Location 127,983,060 - 127,983,991
singlet/doubletsinglet
Overlap geneEG668828
Upstream geneLOC100043361, LOC100043364, Larp7, 4930422G04Rik, Neurog2, Alpk1, T2bp, BC002199, 5730508B09Rik, LOC100043382
Downstream geneLOC100043393, EG668831, Pitx2, Enpep
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023F06.b
ACCDH855279
length925
definitionDH855279|Mus musculus domesticus DNA, BAC clone: B6Ng01-023F06, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccttgcgcagggcacaaaagcagaatctaaaaatatgctggtgat
ggaaagcacatgatgagagcaggatgaaggcacataagtggactataata
aaacacaaagcgagcgggacatgggaactggcagtgcaaatgccgagggg
cgctggctgactgtaatgaggtctgtggggctagtccttcgtactgtgaa
attgccacatgagtttgacttatgttccacgagttacttacgcatttttg
ctgtgtaagtgaaaatcactggcacatgtatgcataggcttataactcat
cttttattattttatatattttttcaaatagccctttattattttgtagg
aaaaactaacggagtaacttgaaataaatataattctgtctgtctgtctg
tcttaacacagcttgcctcaagtttatttgtacaaacagtgtacaatggt
aatctgcaatacagtatatatagggtcacagagtcagaagtcttttctgt
ggagtatttacaggggttctgggcacctttgggagcctgatctaaagctg
aaacctgggccttagctggagctgtggcctctgccttgatttgaaccttg
ggctttggttggcagagcctaagccccttggccatgcttcaaatccgctt
cccaagcttgaggtgagctatgaaagccagctggctgagtttgcggctgg
ggccctttggcatcttgggcttgatggcctgaggcttcacaaggaccttg
atggcctctgcgcatgcactcactgcctttgtattgctggcctgcttctt
ctccagcctttcttgttgtgcttctgggaagcgcatgttctccaggaact
gggtcaaccctactagagatttgtatctttgctactgggatttcttgatg
ccattatgtgccagttgagacactg
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_127983060_127983991
seq2: B6Ng01-023F06.b_40_964

seq1  GAATTCCATTGCGCAGGGCACAAAAGCAGAAACTAAAAATATGCTGGTGA  50
      ||||||| ||||||||||||||||||||||| ||||||||||||||||||
seq2  GAATTCC-TTGCGCAGGGCACAAAAGCAGAATCTAAAAATATGCTGGTGA  49

seq1  TGGAAAGCAGATGATGAGAGCAGGATGAAGGCACAGAAGTGGACTATAAT  100
      ||||||||| ||||||||||||||||||||||||| ||||||||||||||
seq2  TGGAAAGCACATGATGAGAGCAGGATGAAGGCACATAAGTGGACTATAAT  99

seq1  AAAACACAAAGCGAGCGGGACATGGGAACTGGCAGTGCAGATGCGGAGGG  150
      ||||||||||||||||||||||||||||||||||||||| |||| |||||
seq2  AAAACACAAAGCGAGCGGGACATGGGAACTGGCAGTGCAAATGCCGAGGG  149

seq1  GCGCTGGCTGACTGTAATGAGGTCTGTGGGGCTAGTCGTTCGTACTGTGA  200
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GCGCTGGCTGACTGTAATGAGGTCTGTGGGGCTAGTCCTTCGTACTGTGA  199

seq1  AATTGCGACATGAGTTTGACTTATGTTCCACGAGTTACTTACGCATTTTT  250
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCCACATGAGTTTGACTTATGTTCCACGAGTTACTTACGCATTTTT  249

seq1  GCTGTGTAAGTGAAAATCACTGGCACATGTATGCATAGGCTTATAACTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTAAGTGAAAATCACTGGCACATGTATGCATAGGCTTATAACTCA  299

seq1  TCTTTTATTATTTTATATATTTTTTCAAATAGCCCTTTATTATTTTGTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTATTATTTTATATATTTTTTCAAATAGCCCTTTATTATTTTGTAG  349

seq1  GAAAAACTAACGGAGTAACTTGAAATAAATATAATTCTGTCTGTCTGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACTAACGGAGTAACTTGAAATAAATATAATTCTGTCTGTCTGTCT  399

seq1  GTCTTAACACAGCTTGCCTCAAGTTTATTTGTACAAACAGTGTACAATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAACACAGCTTGCCTCAAGTTTATTTGTACAAACAGTGTACAATGG  449

seq1  TAATCTGCAATACAGTATATATAGTGTCACAGAGTCAGAAGTCTTTTCTG  500
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TAATCTGCAATACAGTATATATAGGGTCACAGAGTCAGAAGTCTTTTCTG  499

seq1  TGGAGTATTTACAGGGGTTCTGGGCACCTTTGGGAGCCTGATCTAGAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGGAGTATTTACAGGGGTTCTGGGCACCTTTGGGAGCCTGATCTAAAGCT  549

seq1  GAAGCCTGGGCCTTAGCTGGAGCTGTGGCCTCTGCCTTGATTTGAACCTT  600
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCTGGGCCTTAGCTGGAGCTGTGGCCTCTGCCTTGATTTGAACCTT  599

seq1  GGGCTTTGGTTGGCAGAGCCTAAGCCCCTTGGCCATGCTTCAAATCCGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTTGGTTGGCAGAGCCTAAGCCCCTTGGCCATGCTTCAAATCCGCT  649

seq1  TCCCAAGCTTGAGGTGAGCTATGAAAGCCAGCTGGCTGAGTTTGCGGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGCTTGAGGTGAGCTATGAAAGCCAGCTGGCTGAGTTTGCGGCTG  699

seq1  GGGCCCTTTGGCATCTTGGGCTTGATGGCCTGAGGCTTCACAGGGACCTT  750
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GGGCCCTTTGGCATCTTGGGCTTGATGGCCTGAGGCTTCACAAGGACCTT  749

seq1  GATGGCCTCTGCGCATGCACTCACTGCCTTTGTATTGCTGGCCTGCTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCCTCTGCGCATGCACTCACTGCCTTTGTATTGCTGGCCTGCTTCT  799

seq1  TCTCCAGGCCTTTCTTGTTGTGCTTCTTGGCAAAGCGCATGTTCTCCAGG  850
      |||||| |||||||||||||||||||| ||  ||||||||||||||||||
seq2  TCTCCA-GCCTTTCTTGTTGTGCTTCTGGG--AAGCGCATGTTCTCCAGG  846

seq1  AACTGAGGTCAACCCTACTAAGAGATTTGTATCTTTGCGACTGGGATTTC  900
      ||||| ||||||||||||| |||||||||||||||||| |||||||||||
seq2  AACTG-GGTCAACCCTACT-AGAGATTTGTATCTTTGCTACTGGGATTTC  894

seq1  TTGATGCCATTTATGTGCCATTTGAGACACTG  932
      ||||||||| |||||||||| |||||||||||
seq2  TTGATGCCA-TTATGTGCCAGTTGAGACACTG  925