BAC Information

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BAC

Clone NameB6Ng01-023G24
Chromosome3 (Build37)
Map Location 3,991,677 - 4,138,200
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC667655, LOC100039140, Hnf4g, EG383815, LOC100039157, LOC100039167
Downstream geneLOC667709, LOC620283
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023G24.bB6Ng01-023G24.g
ACCDH855358DH855359
length1,0211,068
definitionDH855358|Mus musculus domesticus DNA, BAC clone: B6Ng01-023G24, 5' end.DH855359|Mus musculus domesticus DNA, BAC clone: B6Ng01-023G24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,991,677 - 3,992,696)(4,137,135 - 4,138,200)
sequence
gaattctcacctgaggaatactgaatggcagagaagcacctgaaaaaaaa
tgttcatcatccttaatcatcagggaaatgcaaatcaaaacaaacctgag
attctacctcacaccagtcagaatggctaagatctaacattcaggtgaca
gcagatgctggcgatgatgtggataaaaaggaacacttttccactgttgg
tgggattgcaagcttgtacaaccactctggaaaccagtctagctgttcct
cagaaaattggacatggtactaccagaggatcccgaaatacccctcctgg
gcatatatccagaagatgacccaacttgtaataagaacacgtgctccact
atgttcatagcagccttatttataatacccagaagctggaaagaacccag
atgccccttaacagaggaatggataaggcagtattttctaggagaaaaaa
aaatatcctttgagattttcatgtaaatagaaagaataagtgagttactg
atcataatcaatctgacaccatgtatttgctattaaaaataacactaaaa
aaactgtttccacatcctttccacctcccagtagttgagaatatttggaa
acaaacttttttcttttttatctgttttttattagatattttctttaatt
atatttcaaatgctatctcaaaagttccctgtaccttcccctcaccctgc
tccccctacccacccactcccactttcgaggccctggtgttcccctgtat
tgggggcatataaagattgtaatacttaagggggcctctctttccaattc
caacttaattcttcactgagtttagaaaagggcaattgggcaaattcatc
taaattaacaaaaaaccctagatagtcaaaacttatcccaaaaataaaaa
cctcctaaggaatgaccgggcctgacctcaagctgtactacagatcaatt
ggataaaactgcatgggtcttgtacagtgacagggaggtagatggaattt
ttttgcaatttctgtttgaag

gaattccattgtctgggtaagactggctattgtcccaagtaaatactctg
cagaccagccctgagctattcctgctccattctttgtaatgtctaattag
tttcattgtctctactagaagtaaatttgaatgttactgaataggtaacc
ttcttactgaattcctactgaattccaagtttgttaacttctgggatgtc
agagaccatccagtgagaaagtgagccctacacaatctccctgacaggcc
aaatggcctcatgctaagagttggttatcactccctcctccctattccct
tcctggcacctgaggctgtaaaagctgaattatagtccactcttccctat
cacttcctgaactcccatgccatccaaggacatgagttatgcctgagccc
ggactgacaccccaaggctgtcaaggaggatctatgtcccggagataaga
tggagagtacccgccgcctggctcctgacttcggccctcatgtcagcaga
tgcccatttctttgttctttgtaaaattccccctcgacccctccctattc
ccctcgatgtatgctttaaaataaggcacctcagcataataaatgaagac
cttgacaactttgcttggtcttcagcttttcttccccttcctcccatttt
cttccaggtttgaggtccccctcacacccagaaataactgagtcccgtgg
gacgggatactggatgttggaacactgacaaaggcttagctatgtcagaa
ttcaatctttaaagtcacttaaaataaaataatactaaagagagcatgtg
gatctatacaccagactaacgaggggataaggtatgaggataggggttat
gagaatgccaaggttccaggaggttgagtttccttgaaactctttgcctc
gtgagtgctatcagctctcggtctgccaagcagactttcatgtgactgtg
agtagcagatgatcaaggaagaattaattaaatgacaataaactgaaaac
ttgtttgtttgttttgtttcatgaaacctagctttcaataagttatcttt
aatacttgcaacactttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_3991677_3992696
seq2: B6Ng01-023G24.b_43_1063

seq1  GAATTCTCACCTGAGGAATACTGAATGGCAGAGAAGCACCTGAAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCTGAGGAATACTGAATGGCAGAGAAGCACCTGAAAAAAAA  50

seq1  TGTTCATCATCCTTAATCATCAGGGAAATGCAAATCAAAACAAACCTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATCATCCTTAATCATCAGGGAAATGCAAATCAAAACAAACCTGAG  100

seq1  ATTCTACCTCACACCAGTCAGAATGGCTAAGATCTAACATTCAGGTGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTACCTCACACCAGTCAGAATGGCTAAGATCTAACATTCAGGTGACA  150

seq1  GCAGATGCTGGCGATGATGTGGATAAAAAGGAACACTTTTCCACTGTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATGCTGGCGATGATGTGGATAAAAAGGAACACTTTTCCACTGTTGG  200

seq1  TGGGATTGCAAGCTTGTACAACCACTCTGGAAACCAGTCTAGCTGTTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTGCAAGCTTGTACAACCACTCTGGAAACCAGTCTAGCTGTTCCT  250

seq1  CAGAAAATTGGACATGGTACTACCAGAGGATCCCGAAATACCCCTCCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAATTGGACATGGTACTACCAGAGGATCCCGAAATACCCCTCCTGG  300

seq1  GCATATATCCAGAAGATGACCCAACTTGTAATAAGAACACGTGCTCCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATATCCAGAAGATGACCCAACTTGTAATAAGAACACGTGCTCCACT  350

seq1  ATGTTCATAGCAGCCTTATTTATAATACCCAGAAGCTGGAAAGAACCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCATAGCAGCCTTATTTATAATACCCAGAAGCTGGAAAGAACCCAG  400

seq1  ATGCCCCTTAACAGAGGAATGGATAAGGCAGTATTTTCTAGGAGAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCCTTAACAGAGGAATGGATAAGGCAGTATTTTCTAGGAGAAAAAA  450

seq1  AAATATCCTTTGAGATTTTCATGTAAATAGAAAGAATAAGTGAGTTACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCCTTTGAGATTTTCATGTAAATAGAAAGAATAAGTGAGTTACTG  500

seq1  ATCATAATCAATCTGACACCATGTATTTGCTATTAAAAATAACACTAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAATCAATCTGACACCATGTATTTGCTATTAAAAATAACACTAAAA  550

seq1  AAACTGTTTCCACATCCTTTCCACCTCCCAGTAGTTGAGAATATTTGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTTTCCACATCCTTTCCACCTCCCAGTAGTTGAGAATATTTGGAA  600

seq1  ACAAACTTTTTTCTTTTTTATCTGTTTTTTATTAGATATTTTCTTTAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACTTTTTTCTTTTTTATCTGTTTTTTATTAGATATTTTCTTTAATT  650

seq1  ATATTTCAAATGCTATCTCAAAAGTTCCCTGTACCTTCCCCTCACCCTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCAAATGCTATCTCAAAAGTTCCCTGTACCTTCCCCTCACCCTGC  700

seq1  T-CCCCTACCCACCCACTCCCAC-TTCGAGGCCCTGGTGTTCCCCTGTAC  748
      | ||||||||||||||||||||| ||||||||||||||||||||||||| 
seq2  TCCCCCTACCCACCCACTCCCACTTTCGAGGCCCTGGTGTTCCCCTGTAT  750

seq1  T-GGGGCATATAAAGATTGTAATACT--AAGGGGCCTCTCTTTCCAATTC  795
      | ||||||||||||||||||||||||  | ||||||||||||||||||||
seq2  TGGGGGCATATAAAGATTGTAATACTTAAGGGGGCCTCTCTTTCCAATTC  800

seq1  CAACTTAATTCTTCACTGAG-TTAG-AAAGGGCAATT-GGCAAATTCATC  842
      |||||||||||||||||||| |||| ||||||||||| ||||||||||||
seq2  CAACTTAATTCTTCACTGAGTTTAGAAAAGGGCAATTGGGCAAATTCATC  850

seq1  TAGAATAACAAAAAACCTAGGATAG-CAAAACCTATTCCGAAAAATAAAA  891
      || | ||||||||||||   ||||| |||||| || ||| ||||||||| 
seq2  TAAATTAACAAAAAACCCTAGATAGTCAAAACTTA-TCCCAAAAATAAA-  898

seq1  GAACCT-CTAAGGTAATGACCGTGCCTGACCTCAAGCTGTACTACAGAGC  940
       ||||| |||||| |||||||| ||||||||||||||||||||||||| |
seq2  -AACCTCCTAAGG-AATGACCGGGCCTGACCTCAAGCTGTACTACAGATC  946

seq1  AATTGTGATAAAAACTGCATGGTACTGGTACAGTGACAGGTAGGTAGATG  990
      ||||| ||| ||||||||||||  || ||||||||||||| |||||||||
seq2  AATTG-GAT-AAAACTGCATGGGTCTTGTACAGTGACAGGGAGGTAGATG  994

seq1  AAAATTTTATTTGCAATTTCATGTTTGAAG  1020
       ||  ||| ||||||||||| |||||||||
seq2  GAA--TTTTTTTGCAATTTC-TGTTTGAAG  1021


seq1: chr3_4137135_4138200
seq2: B6Ng01-023G24.g_70_1137 (reverse)

seq1  AAAAGTGTTGCATGTAT--AAGATAACTTTATTG-AAGCTA-GTTTCATT  46
      |||||||||||| ||||  |||||||| |||||| |||||| |||||| |
seq2  AAAAGTGTTGCAAGTATTAAAGATAAC-TTATTGAAAGCTAGGTTTCA-T  48

seq1  GAAAC-AAACAAAC-AACAAGTTTTCAGTTTTATTGTCATTTTATTTTAT  94
      ||||| |||||||| ||||||||||||| |||||||||| |||| || ||
seq2  GAAACAAAACAAACAAACAAGTTTTCAG-TTTATTGTCA-TTTAATTAAT  96

seq1  TCTCCTTTGATCATCTGCTACTCACAGTCCAGTGAAAGTCTGCTTGGCAG  144
      ||| | |||||||||||||||||||||||   ||||||||||||||||||
seq2  TCTTCCTTGATCATCTGCTACTCACAGTCACATGAAAGTCTGCTTGGCAG  146

seq1  GCCGAGGGCTGGAAGCACTCACGAGGCAAAGAGTTTCAAGGAAACTCAAC  194
       ||||| ||||  |||||||||||||||||||||||||||||||||||||
seq2  ACCGAGAGCTGATAGCACTCACGAGGCAAAGAGTTTCAAGGAAACTCAAC  196

seq1  CTCCTGGAACCTTGGCATTCTCATAACCCCTATCCTCATACCTTATCCCC  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGAACCTTGGCATTCTCATAACCCCTATCCTCATACCTTATCCCC  246

seq1  TCGTTAGTCTGGTGTATAGATCCACATGCTCTCTTTAGTATTATTTTATT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTAGTCTGGTGTATAGATCCACATGCTCTCTTTAGTATTATTTTATT  296

seq1  TTAAGTGACTTTAAAGATTGAATTCTGACATAGCTAAGCCTTTGTCAGTG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTGACTTTAAAGATTGAATTCTGACATAGCTAAGCCTTTGTCAGTG  346

seq1  TTCCAACATCCAGTATCCCGTCCCACGGGACTCAGTTATTTCTGGGTGTG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAACATCCAGTATCCCGTCCCACGGGACTCAGTTATTTCTGGGTGTG  396

seq1  AGGGGGACCTCAAACCTGGAAGAAAATGGGAGGAAGGGGAAGAAAAGCTG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGACCTCAAACCTGGAAGAAAATGGGAGGAAGGGGAAGAAAAGCTG  446

seq1  AAGACCAAGCAAAGTTGTCAAGGTCTTCATTTATTATGCTGAGGTGCCTT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCAAGCAAAGTTGTCAAGGTCTTCATTTATTATGCTGAGGTGCCTT  496

seq1  ATTTTAAAGCATACATCGAGGGGAATAGGGAGGGGTCGAGGGGGAATTTT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAAGCATACATCGAGGGGAATAGGGAGGGGTCGAGGGGGAATTTT  546

seq1  ACAAAGAACAAAGAAATGGGCATCTGCTGACATGAGGGCCGAAGTCAGGA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAACAAAGAAATGGGCATCTGCTGACATGAGGGCCGAAGTCAGGA  596

seq1  GCCAGGCGGCGGGTACTCTCCATCTTATCTCCGGGACATAGATCCTCCTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGCGGCGGGTACTCTCCATCTTATCTCCGGGACATAGATCCTCCTT  646

seq1  GACAGCCTTGGGGTGTCAGTCCGGGCTCAGGCATAACTCATGTCCTTGGA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCCTTGGGGTGTCAGTCCGGGCTCAGGCATAACTCATGTCCTTGGA  696

seq1  TGGCATGGGAGTTCAGGAAGTGATAGGGAAGAGTGGACTATAATTCAGCT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATGGGAGTTCAGGAAGTGATAGGGAAGAGTGGACTATAATTCAGCT  746

seq1  TTTACAGCCTCAGGTGCCAGGAAGGGAATAGGGAGGAGGGAGTGATAACC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGCCTCAGGTGCCAGGAAGGGAATAGGGAGGAGGGAGTGATAACC  796

seq1  AACTCTTAGCATGAGGCCATTTGGCCTGTCAGGGAGATTGTGTAGGGCTC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTAGCATGAGGCCATTTGGCCTGTCAGGGAGATTGTGTAGGGCTC  846

seq1  ACTTTCTCACTGGATGGTCTCTGACATCCCAGAAGTTAACAAACTTGGAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTCACTGGATGGTCTCTGACATCCCAGAAGTTAACAAACTTGGAA  896

seq1  TTCAGTAGGAATTCAGTAAGAAGGTTACCTATTCAGTAACATTCAAATTT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTAGGAATTCAGTAAGAAGGTTACCTATTCAGTAACATTCAAATTT  946

seq1  ACTTCTAGTAGAGACAATGAAACTAATTAGACATTACAAAGAATGGAGCA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTAGTAGAGACAATGAAACTAATTAGACATTACAAAGAATGGAGCA  996

seq1  GGAATAGCTCAGGGCTGGTCTGCAGAGTATTTACTTGGGACAATAGCCAG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAGCTCAGGGCTGGTCTGCAGAGTATTTACTTGGGACAATAGCCAG  1046

seq1  TCTTACCCAGACAATGGAATTC  1066
      ||||||||||||||||||||||
seq2  TCTTACCCAGACAATGGAATTC  1068


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