BAC Information

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BAC

Clone NameB6Ng01-023H01
Chromosome3 (Build37)
Map Location 44,258,175 - 44,396,416
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039264
Downstream geneLOC676484, LOC100039296, Pcdh10, LOC100039282
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023H01.bB6Ng01-023H01.g
ACCDH855360DH855361
length1501,027
definitionDH855360|Mus musculus domesticus DNA, BAC clone: B6Ng01-023H01, 5' end.DH855361|Mus musculus domesticus DNA, BAC clone: B6Ng01-023H01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,258,175 - 44,258,324)(44,395,397 - 44,396,416)
sequence
gaattcttatttcatatccattgtgacttattttttagtttctgaaagtg
taaataagcttttcacgtatgaatattgatcacactttttcctttggcac
atgtatctgttataatagtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtg

gaattcttgctcaggcaagcatactttaggagtacttgtacatctgacct
tactaatttgttaagaaggaaggagttctgaaatttcctggaaagtggaa
gctaacaagacaataagatcaggcataattagacacattcatacattaat
tacatttcttatttctgtgacaaaacacctgacaaaagcaagtaagaaag
gaggagtctgttttgtctctgaatttgggaattcagatcatcaagtcaac
agatcctgaacaagcttgtcaaattgtgtctgcagttaggaaacaaggag
agatgaatactgatgcttagcagactttaagcttgaagtgaagtccaaga
ttccaatctacagaatagaggtgctcacattcagggctgcatttccactt
cattaaaccaagtgtagacaattccttacagatatgtccagaatcttggc
tcctatgtgactgtagaaactgtcaagatgtcagtgttagccatcacatt
caaaatggcgttatcacctattttcacaaataaatacaatatgcacatac
acacacacacacacacacacacacacacacatatatacatatgacataaa
tgcaaaatatatattatggaaaaggaggaagaggcataatgagaggggaa
gtaaacatgagagggtgtcaaggatatatggtcttaaaacattacaggga
tgatttgaaggatgatagtaggttaccaaaaagaaagaataaaagctgga
tgaagaaaaggctatccaaagacaactcggccagactctggagctctcag
ggactaaatcaccaatccagagagaacacatggagggatctatggcttca
gccgcatatgtggcagaggagggccttggttggcatcgtaggaggagaga
ctcttgagcctgaggtgttcgatgtctcagtgtaggagagtgccagggaa
gggaagatgtaagtgattggtttgcctggggagaaccactcttatagagg
caagggggaggagggatgagaataggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_44258175_44258324
seq2: B6Ng01-023H01.b_35_184

seq1  GAATTCTTATTTCATATCCATTGTGACTTATTTTTTAGTTTCTGAAAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATTTCATATCCATTGTGACTTATTTTTTAGTTTCTGAAAGTG  50

seq1  TAAATAAGCTTTTCACGTATGAATATTGATCACACTTTTTCCTTTGGCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAGCTTTTCACGTATGAATATTGATCACACTTTTTCCTTTGGCAC  100

seq1  ATGTATCTGTTATAATAGTGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATCTGTTATAATAGTGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTG  150

seq1: chr3_44395397_44396416
seq2: B6Ng01-023H01.g_69_1093 (reverse)

seq1  CCCTA-TCTCATCCCTCCTCCCCC-TGCCTCTATAAGAGTGGTTCTCCCC  48
      ||||| |||||||||||||||||| |||||||||||||||||||||||||
seq2  CCCTATTCTCATCCCTCCTCCCCCTTGCCTCTATAAGAGTGGTTCTCCCC  50

seq1  A-GCCAACCAATCACTTACATCTTCCC-TCCCTGGCACTCTCCTACACTG  96
      | || |||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGGCAAACCAATCACTTACATCTTCCCTTCCCTGGCACTCTCCTACACTG  100

seq1  GGGCATCGAACACCCTCAGGCTCAAGGGTCTCTCCTCCTACGATGCCAAC  146
       | ||||||||| ||||||||||||| |||||||||||||||||||||||
seq2  AGACATCGAACA-CCTCAGGCTCAAGAGTCTCTCCTCCTACGATGCCAAC  149

seq1  CAAGGCCCTCCTCTGCCACATATGCGGCTGAAGCCATGGATCCCTCCATG  196
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CAAGGCCCTCCTCTGCCACATATGCGGCTGAAGCCATAGATCCCTCCATG  199

seq1  TGTTCTCTCTGG-TTGGTGATTTAGTCCCTGGGAGCTCCAGAGTCTGGCC  245
      |||||||||||| |||||||||||||||||| ||||||||||||||||||
seq2  TGTTCTCTCTGGATTGGTGATTTAGTCCCTGAGAGCTCCAGAGTCTGGCC  249

seq1  G-GTTGTCTTTGGATGGCCTTTTCTTCATCCAGCTTTTATTCTTTCTTTT  294
      | ||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GAGTTGTCTTTGGATAGCCTTTTCTTCATCCAGCTTTTATTCTTTCTTTT  299

seq1  TGGTAACCTACTATCATCCTTCAAATCATCCCTGTAATGTTTTAAGACCA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAACCTACTATCATCCTTCAAATCATCCCTGTAATGTTTTAAGACCA  349

seq1  TATATCCTTGACACCCTCTCATGTTTACTTCCCCTCTCATTATGCCTCTT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCCTTGACACCCTCTCATGTTTACTTCCCCTCTCATTATGCCTCTT  399

seq1  CCTCCTTTTCCATAATATATATTTTGCATTTATGTCATATGTATATATGT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTTTCCATAATATATATTTTGCATTTATGTCATATGTATATATGT  449

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGCATATTGTATTTATT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGCATATTGTATTTATT  499

seq1  TGTGAAAATAGGTGATAACGCCATTTTGAATGTGATGGCTAACACTGACA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAAATAGGTGATAACGCCATTTTGAATGTGATGGCTAACACTGACA  549

seq1  TCTTGACAGTTTCTACAGTCACATAGGAGCCAAGATTCTGGACATATCTG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGACAGTTTCTACAGTCACATAGGAGCCAAGATTCTGGACATATCTG  599

seq1  TAAGGAATTGTCTACACTTGGTTTAATGAAGTGGAAATGCAGCCCTGAAT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAATTGTCTACACTTGGTTTAATGAAGTGGAAATGCAGCCCTGAAT  649

seq1  GTGAGCACCTCTATTCTGTAGATTGGAATCTTGGACTTCACTTCAAGCTT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCACCTCTATTCTGTAGATTGGAATCTTGGACTTCACTTCAAGCTT  699

seq1  AAAGTCTGCTAAGCATCAGTATTCATCTCTCCTTGTTTCCTAACTGCAGA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCTGCTAAGCATCAGTATTCATCTCTCCTTGTTTCCTAACTGCAGA  749

seq1  CACAATTTGACAAGCTTGTTCAGGATCTGTTGACTTGATGATCTGAATTC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATTTGACAAGCTTGTTCAGGATCTGTTGACTTGATGATCTGAATTC  799

seq1  CCAAATTCAGAGACAAAACAGACTCCTCCTTTCTTACTTGCTTTTGTCAG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATTCAGAGACAAAACAGACTCCTCCTTTCTTACTTGCTTTTGTCAG  849

seq1  GTGTTTTGTCACAGAAATAAGAAATGTAATTAATGTATGAATGTGTCTAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTGTCACAGAAATAAGAAATGTAATTAATGTATGAATGTGTCTAA  899

seq1  TTATGCCTGATCTTATTGTCTTGTTAGCTTCCACTTTCCAGGAAATTTCA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCCTGATCTTATTGTCTTGTTAGCTTCCACTTTCCAGGAAATTTCA  949

seq1  GAACTCCTTCCTTCTTAACAAATTAGTAAGGTCAGATGTACAAGTACTCC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCCTTCCTTCTTAACAAATTAGTAAGGTCAGATGTACAAGTACTCC  999

seq1  TAAAGTATGCTTGCCTGAGCAAGAAT  1020
      ||||||||||||||||||||||||||
seq2  TAAAGTATGCTTGCCTGAGCAAGAAT  1025