BAC Information

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BAC

Clone NameB6Ng01-023I22
Chromosome3 (Build37)
Map Location 147,496,292 - 147,593,960
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040540, Ttll7, Ppia-ps3_1528.1
Downstream geneLOC100040354, Lphn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023I22.bB6Ng01-023I22.g
ACCDH855444DH855445
length1,0871,106
definitionDH855444|Mus musculus domesticus DNA, BAC clone: B6Ng01-023I22, 5' end.DH855445|Mus musculus domesticus DNA, BAC clone: B6Ng01-023I22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,592,869 - 147,593,960)(147,496,292 - 147,497,406)
sequence
gaattcagaaccacagaaggatcatttggactccatttggcagagccgtc
agaaactcactgctcttgggaatgtccttctccaataacatttatagctc
tagatggaagcgaaaggcaccatatgttaagggtttcctgcaaagcttcc
tggtaagcgaggaaataaattcaacttgtcacatctgctcgtgggccagt
caagtaggattttatcacagccttaagtggtttacaaaactgtcctgtta
tcgactgaaggggctttatgtttcaggttgttttttttttttcttttttt
cttttttaatactgatgtctgtaatctaaatcattaaactatttttcttc
tttgagtttagcagcatgaatcatcatttgcttctaagtaagcagaattt
ctcaaagctattcagcaaagaatcacatcccaatagctttgtctccctac
agctctctatggcttaacagcagagcgccttccggtctctatctacctaa
gctttgactcttgagtccttgtattttgcataatttaagatgtgaactgt
gtttaattagactaaattgattatctaccattccaaaggcctcaactggt
ttcacccatgacaaagacccacatggtcaatacaaatttgtttagtgtta
gccggaggtacaggtacctctttaacaaatgtgttaaaacctgtattgtg
aggctcacatttggggttcatgtttgtaaccctcacagttcaacattagg
agagttatgacaggcatttcacttcttttctcgttagcggaatccccagt
ctgcagatagaaatacagtgaggcatgtgagccctaccttctcccaagga
tgagaaaggtaaatggatgttctgagggcatggataagttctcagctcat
gacttacaactttccatttatgtcttttttgtaaggagaaaacttcatct
gtgtcttctatcatttcagaagttaagtgatctcactttgaagcaaaact
gcctctcttcatgtctggttatttcttgggcaatttaatggaatgcatgt
agcacgggcatacaggggataaactcacacacttgtt
gaattcagtgtgtctgtgggagcatacagatctcctgggagacctttgac
tcttggctttctggttcctgggctctatcctgttttgcttgtctctctag
tctgttgtgtgtacaaatgttgtgtgttaagatcaaggggtggacacctg
gtttatgtctcggagtcccatcacttgccctcataaagattttgctctgg
gcattgcagctgtgattctttctgttcttgaaacaactgctgaacagtta
cacagcagagagtaatgaaggctgcacacgcaccgcaccgcaccgcaccg
caccgcaccgcaccgcaccgcaccgcaccgcaccctgcttcctttccacc
ttgcatcctcctgttaccaaaggggaaacacgtgtttctcaaactcgatt
tttgctgatgaaaattttgttcaatttcacagcttgacttcaggattttc
ccaagtgatggtaaattccattctcttgccaaacaaggaaataatctacg
agtctttttgggaggaaaacctccaggttccccctcaaggctcagtatcc
gataaatataatgaaaaaaaaaattggcatgtcagcttctgctagtcaag
atattaccttgtttaatgattgcaaattcaggaaaaaaatatttaatatg
ggttaagggaacattaagttactaaaatgtcctccaaagtacagatattt
acagcaatagtagtttctgacgctggagcagccaagctggaagaaaagct
tacgagtgacttagagtcaaggatttgcacagttgttgtagcgttatagc
tgggcggagaactcaatgttagaatctcccctgcatgcatgcatccttct
gttttgattgggaaagttgttcagtagctcatgtttctttgtgaaacgtt
attttctttttacttatctgtacactgtaagcctcatctctttctttctc
aatctctagctcaccacagctcagataaaacactttctatgggtcatttc
attaaaagtgtcataaaaaataaatagcttgtatggaatagggaaggcac
tgactgatctctcagcaagctcacgagggaagccttttctattcttttgg
tttggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_147592869_147593960
seq2: B6Ng01-023I22.b_42_1128 (reverse)

seq1  AACAAGTGT-TGAGGTTTATACCACTGTATGGCCCTGCTACCTGCATTCC  49
      ||||||||| ||| |||||| || ||||||| || |||||| ||||||||
seq2  AACAAGTGTGTGA-GTTTAT-CCCCTGTATGCCCGTGCTACATGCATTCC  48

seq1  ATTATAATTGCCCATGGAATTAAACAGACATGAAGAGA-GCAGTTTTTGC  98
      |||| |||||||||  ||| ||| |||||||||||||| |||| ||||||
seq2  ATTA-AATTGCCCA-AGAAATAACCAGACATGAAGAGAGGCAG-TTTTGC  95

seq1  TTC-AAGTGAGAATCACTTTAACTTCTGAAATGATAGGAGACACATGAAT  147
      ||| ||||||| ||||| ||||||||||||||||||| ||||||| ||  
seq2  TTCAAAGTGAG-ATCAC-TTAACTTCTGAAATGATAGAAGACACA-GATG  142

seq1  GAGTTTTCTCCCTTAC-AAAAAGACATAAATGGAAAGTTGTAAGTCATTG  196
       |||||||| |||||| |||||||||||||||||||||||||||||| ||
seq2  AAGTTTTCT-CCTTACAAAAAAGACATAAATGGAAAGTTGTAAGTCA-TG  190

seq1  AGCTGAGAACTTATCCATGCCCTCAGAACATCCATTTACCTTTCTCATCC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGAACTTATCCATGCCCTCAGAACATCCATTTACCTTTCTCATCC  240

seq1  TTGGGAGAAGGTAGGGCTCACATGCCTCACTGTATTTCTATCTGCAGACT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGAAGGTAGGGCTCACATGCCTCACTGTATTTCTATCTGCAGACT  290

seq1  GGGGATTCCGCTTACGAG-AAAGAAGTGAAATGCCTGTCATAACTCTCCT  345
      |||||||||||| ||||| |||||||||||||||||||||||||||||||
seq2  GGGGATTCCGCTAACGAGAAAAGAAGTGAAATGCCTGTCATAACTCTCCT  340

seq1  AATGTTGAACTGTGAGGGTTACAAACATGAACCCCAAATGTGAGCCTCAC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTGAACTGTGAGGGTTACAAACATGAACCCCAAATGTGAGCCTCAC  390

seq1  AATACAGGTTTTAACACATTTGTTAAAGAGGTACCTGTACCTCCGGCTAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAGGTTTTAACACATTTGTTAAAGAGGTACCTGTACCTCCGGCTAA  440

seq1  CACTAAACAAATTTGTATTGACCATGTGGGTCTTTGTCATGGGTGAAACC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAACAAATTTGTATTGACCATGTGGGTCTTTGTCATGGGTGAAACC  490

seq1  AGTTGAGGCCTTTGGAATGGTAGATAATCAATTTAGTCTAATTAAACACA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAGGCCTTTGGAATGGTAGATAATCAATTTAGTCTAATTAAACACA  540

seq1  GTTCACATCTTAAATTATGCAAAATACAAGGACTCAAGAGTCAAAGCTTA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACATCTTAAATTATGCAAAATACAAGGACTCAAGAGTCAAAGCTTA  590

seq1  GGTAGATAGAGACCGGAAGGCGCTCTGCTGTTAAGCCATAGAGAGCTGTA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGATAGAGACCGGAAGGCGCTCTGCTGTTAAGCCATAGAGAGCTGTA  640

seq1  GGGAGACAAAGCTATTGGGATGTGATTCTTTGCTGAATAGCTTTGAGAAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGACAAAGCTATTGGGATGTGATTCTTTGCTGAATAGCTTTGAGAAA  690

seq1  TTCTGCTTACTTAGAAGCAAATGATGATTCATGCTGCTAAACTCAAAGAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTTACTTAGAAGCAAATGATGATTCATGCTGCTAAACTCAAAGAA  740

seq1  GAAAAATAGTTTAATGATTTAGATTACAGACATCAGTATTAAAAAAGAAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATAGTTTAATGATTTAGATTACAGACATCAGTATTAAAAAAGAAA  790

seq1  AAAAGAAAAAAAAAAAACAACCTGAAACATAAAGCCCCTTCAGTCGATAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAAAAAAAAAACAACCTGAAACATAAAGCCCCTTCAGTCGATAA  840

seq1  CAGGACAGTTTTGTAAACCACTTAAGGCTGTGATAAAATCCTACTTGACT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACAGTTTTGTAAACCACTTAAGGCTGTGATAAAATCCTACTTGACT  890

seq1  GGCCCACGAGCAGATGTGACAAGTTGAATTTATTTCCTCGCTTACCAGGA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCACGAGCAGATGTGACAAGTTGAATTTATTTCCTCGCTTACCAGGA  940

seq1  AGCTTTGCAGGAAACCCTTAACATATGGTGCCTTTCGCTTCCATCTAGAG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGCAGGAAACCCTTAACATATGGTGCCTTTCGCTTCCATCTAGAG  990

seq1  CTATAAATGTTATTGGAGAAGGACATTCCCAAGAGCAGTGAGTTTCTGAC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAATGTTATTGGAGAAGGACATTCCCAAGAGCAGTGAGTTTCTGAC  1040

seq1  GGCTCTGCCAAATGGAGTCCAAATGATCCTTCTGTGGTTCTGAATTC  1092
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTGCCAAATGGAGTCCAAATGATCCTTCTGTGGTTCTGAATTC  1087

seq1: chr3_147496292_147497406
seq2: B6Ng01-023I22.g_68_1173

seq1  GAATTCAGTGTGTCTGTGGGAGCATACAGATCTCCTGGGAGACCTTTGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGTGTCTGTGGGAGCATACAGATCTCCTGGGAGACCTTTGAC  50

seq1  TCTTGGCTTTCTGGTTCCTGGGCTCTATCCTGTTTTGCTTGTCTCTCTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGCTTTCTGGTTCCTGGGCTCTATCCTGTTTTGCTTGTCTCTCTAG  100

seq1  TCTGTTGTGTGTACAAATGTTGTGTGTTAAGATCAAGGGGTGGACACCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGTGTGTACAAATGTTGTGTGTTAAGATCAAGGGGTGGACACCTG  150

seq1  GTTTATGTCTCGGAGTCCCATCACTTGCCCTCATAAAGATTTTGCTCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATGTCTCGGAGTCCCATCACTTGCCCTCATAAAGATTTTGCTCTGG  200

seq1  GCATTGCAGCTGTGATTCTTTCTGTTCTTGAAACAACTGCTGAACAGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGCAGCTGTGATTCTTTCTGTTCTTGAAACAACTGCTGAACAGTTA  250

seq1  CACAGCAGAGAGTAATGAAGGCTGCACACGCACCGCACCGCACCGCACCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCAGAGAGTAATGAAGGCTGCACACGCACCGCACCGCACCGCACCG  300

seq1  CACCGCACCGCACCGCACCGCACCGCACCGCACCCTGCTTCCTTTCCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGCACCGCACCGCACCGCACCGCACCGCACCCTGCTTCCTTTCCACC  350

seq1  TTGCATCCTCCTGTTACCAAAGGGGAAACACGTGTTTCTCAAACTCGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATCCTCCTGTTACCAAAGGGGAAACACGTGTTTCTCAAACTCGATT  400

seq1  TTTGCTGATGAAAATTTTGTTCAATTTCACAGCTTGACTTCAGGATTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGATGAAAATTTTGTTCAATTTCACAGCTTGACTTCAGGATTTTC  450

seq1  CCAAGTGATGGTAAATTCCATTCTCTTGCCAAACAAGGAAATAATCTACG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTGATGGTAAATTCCATTCTCTTGCCAAACAAGGAAATAATCTACG  500

seq1  AGTCTTTTTGGGAGGAAAACCTCCAGGTTCCCCCTCAAGGCTCAGTATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTTTGGGAGGAAAACCTCCAGGTTCCCCCTCAAGGCTCAGTATCC  550

seq1  GATAAATATAATGAAAAAAAAAATTGGCATGTCAGCTTCTGCTAGTCAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAATATAATGAAAAAAAAAATTGGCATGTCAGCTTCTGCTAGTCAAG  600

seq1  ATATTACCTTGTTTAATGATTGCAAATTCAGGAAAAAAATATTTAATATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTACCTTGTTTAATGATTGCAAATTCAGGAAAAAAATATTTAATATG  650

seq1  GGTTAAGGGAACATTAAGTTACTAAAATGTCCTCCAAAGTACAGATATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAGGGAACATTAAGTTACTAAAATGTCCTCCAAAGTACAGATATTT  700

seq1  ACAGCAATAGTAGTTTCTGACGCTGGAGCAGCCAAGCTGGAAGAAAAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAATAGTAGTTTCTGACGCTGGAGCAGCCAAGCTGGAAGAAAAGCT  750

seq1  TACGAGTGACTTAGAGTCAAGGATTTGCACAGTTGTTGTAGCGTTATAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGAGTGACTTAGAGTCAAGGATTTGCACAGTTGTTGTAGCGTTATAGC  800

seq1  TGGGCGGAGAACTCAATGTTAGAATCTCCCCTGCATGCATGCATCCTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCGGAGAACTCAATGTTAGAATCTCCCCTGCATGCATGCATCCTTCT  850

seq1  GTTTTGATTGGGAAAAGTTTGTTTCAGTAGCTCATGTCCCTTTGTGAAAA  900
      |||||||||||| ||||||   |||||||||||||||  ||||||| |||
seq2  GTTTTGATTGGG-AAAGTT--GTTCAGTAGCTCATGTTTCTTTGTG-AAA  896

seq1  CGTTTATTTTCTTTTTACTTATCTGTACCACTGTAAGCCTCAATCCCCTT  950
      || |||||||||||||||||||||||| ||||||||||||||   | |||
seq2  CG-TTATTTTCTTTTTACTTATCTGTA-CACTGTAAGCCTCA--TCTCTT  942

seq1  TCTTTCTCAATCCCCTAGCTCACCACAGCCCAGATTAAAAACACTTCCTA  1000
      ||||||||||| | ||||||||||||||| |||||  ||||||||| |||
seq2  TCTTTCTCAAT-CTCTAGCTCACCACAGCTCAGAT--AAAACACTTTCTA  989

seq1  TGGGTCATTTTCATTAAAAGTGTCAT-AAAAATAAATAGCTTGTAATGGA  1049
      ||||||| |||||||||||||||||| ||||||||||||||||||  | |
seq2  TGGGTCA-TTTCATTAAAAGTGTCATAAAAAATAAATAGCTTGTATGGAA  1038

seq1  TAGGGAAGGCACGTACTGATCTCCCAGC-AGCACCAGA-GGAAGCC-TTT  1096
      ||||||||||||  ||||||||| |||| ||| |  || ||||||| |||
seq2  TAGGGAAGGCACTGACTGATCTCTCAGCAAGCTCACGAGGGAAGCCTTTT  1088

seq1  CTATTCTTTGGGGTTTTGT  1115
      |||||||||  ||||| ||
seq2  CTATTCTTT-TGGTTTGGT  1106