BAC Information

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BAC

Clone NameB6Ng01-023K17
Chromosome3 (Build37)
Map Location 35,073,429 - 35,245,150
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC435727, EG665636, EG622074, Sox2, LOC100041108
Downstream geneLOC665655, Ube2l3-ps1, LOC625963, Atp11b, LOC665667, Dcun1d1, Mccc1, BC050811, Acad9, D3Ertd254e, Gpr103
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023K17.bB6Ng01-023K17.g
ACCDH855525DH855526
length681119
definitionDH855525|Mus musculus domesticus DNA, BAC clone: B6Ng01-023K17, 5' end.DH855526|Mus musculus domesticus DNA, BAC clone: B6Ng01-023K17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,244,620 - 35,245,150)(35,073,429 - 35,073,547)
sequence
gaattctttgtctagctctgtaccccatttttaatggggttatttgaatt
tctggagtccaacttcttgagttctttgtatatattggatattagtcccc
tatcagatttaggattggtaaagatcctttcccaatctgttggtggcctt
tttgtcttattgacagtgtattttgccttacagaagctttgcagttttat
gaggtcccatttgtcgattctcaatcctacagcacattgctactctgttc
aggatttttcccctgtgcccatatctttgaggctttccccactttctcct
ctataagtttcagtgtctctggttttatgtagagttctttgatccactta
gactttgtccaagatgataagaatggattaatttgcattcttctacatga
caaccaacagttttgttaaggatgaccttgaacgtcagattccctgactc
ggggtcccaagtgctgaggtcatccagagagtcagcatttatgatatcac
aagatcctcctaccttctccatttcatagggggctagtctacattcttgc
atgaatagaatgctcagttggctagagtcttgagtactgcacttagccct
tgagacgtctcatcacatttgaacttttaccctttttatacctcctatga
gtctgggaggaccccagagggctttgccttt
tccccacgttgtctgttagagtcctggacaaatcacgccaaaccgcaggt
ctcacgtgagaggttttattggcagagggtgaagggagggtgagaagagg
agaaggagaaggagagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_35244620_35245150
seq2: B6Ng01-023K17.b_194_725 (reverse)

seq1  AAAGGCAAAGCCCTCTGGGGTCCTCCCAGACTCCTAGGAGGTAT-AAAAG  49
      ||||||||||||||||||||||||||||||||| |||||||||| |||||
seq2  AAAGGCAAAGCCCTCTGGGGTCCTCCCAGACTCATAGGAGGTATAAAAAG  50

seq1  GGTAAATGTTCAAATGTGATGAGACGTCTCAAGGGCTAAGTGCAGTACTC  99
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAAGTTCAAATGTGATGAGACGTCTCAAGGGCTAAGTGCAGTACTC  100

seq1  AAGACTCTAGCCAACTGTGCATTCTATTCATGCAAGAATGTAGACTAGCC  149
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AAGACTCTAGCCAACTGAGCATTCTATTCATGCAAGAATGTAGACTAGCC  150

seq1  CCCTATGAAATGGAGAAGGTAGGAGGATCTTGTGATATCATAAATGCTGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATGAAATGGAGAAGGTAGGAGGATCTTGTGATATCATAAATGCTGA  200

seq1  CTCTCTGGATGACCTCAGCACTTGGGACCCCGAGTCAGGGAATCTGACGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGGATGACCTCAGCACTTGGGACCCCGAGTCAGGGAATCTGACGT  250

seq1  TCAAGGTCATCCTTAACAAAACTGTTGGTTGTCATGTAGAAGAATGCAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGTCATCCTTAACAAAACTGTTGGTTGTCATGTAGAAGAATGCAAA  300

seq1  TTAATCCATTCTTATCATCTTGGACAAAGTCTAAGTGGATCAAAGAACTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCCATTCTTATCATCTTGGACAAAGTCTAAGTGGATCAAAGAACTC  350

seq1  TACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAGC  400

seq1  CTCAAAGATATGGGCACAGGGGAAAAATCCTGAACAGAGTAGCAATGTGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGATATGGGCACAGGGGAAAAATCCTGAACAGAGTAGCAATGTGC  450

seq1  TGTAGGATTGAGAATCGACAAATGGGACCTCATAAAACTGCAAAGCTTCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGATTGAGAATCGACAAATGGGACCTCATAAAACTGCAAAGCTTCT  500

seq1  GTAAGGCAAAATACACTGTCAATAAGACAAAA  531
      ||||||||||||||||||||||||||||||||
seq2  GTAAGGCAAAATACACTGTCAATAAGACAAAA  532

seq1: chr3_35073429_35073547
seq2: B6Ng01-023K17.g_73_191

seq1  TCCCCACGTTGTCTGTTAGAGTCCTGGACAAATCACGCCAAACCGCAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCACGTTGTCTGTTAGAGTCCTGGACAAATCACGCCAAACCGCAGGT  50

seq1  CTCACGTGAGAGGTTTTATTGGCAGAGGGTGAAGGGAGGGTGAGAAGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACGTGAGAGGTTTTATTGGCAGAGGGTGAAGGGAGGGTGAGAAGAGG  100

seq1  AGAAGGAGAAGGAGAGAGA  119
      |||||||||||||||||||
seq2  AGAAGGAGAAGGAGAGAGA  119