BAC Information

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BAC

Clone NameB6Ng01-023L08
Chromosome3 (Build37)
Map Location 89,097,105 - 89,261,547
singlet/doubletdoublet
Overlap geneEfna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1
Upstream gene1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4, 2810403A07Rik, Rit1, Syt11, 5830417I10Rik, Msto1, Dap3, Ash1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1
Downstream genePmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra, Atp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l, Rps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b, Gatad2b, Slc27a3, Ints3, Npr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023L08.bB6Ng01-023L08.g
ACCDH855551DH855552
length8641,131
definitionDH855551|Mus musculus domesticus DNA, BAC clone: B6Ng01-023L08, 5' end.DH855552|Mus musculus domesticus DNA, BAC clone: B6Ng01-023L08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,260,683 - 89,261,547)(89,097,105 - 89,098,252)
sequence
gaattctagtcccaatcacaaaacttccgaatgtatttgcctaagccagg
caatggtggcacacattcttgatctcagcactcaggagtcagaggcagga
agatctctgagttcgaagccacagggtgattcatagccatctgtaactcc
agttccagggaatcttgacagcctcttctggcctccataggcactgcgtg
tatatggtgcactaatatacgtgcaggcaaaacactcacatacataaaat
taagtaaggggctgagagacttgtatcaaggtctagacctctaaatgatg
aaattagctccatctggttccaaaaccagatgttttccagtccagagtat
gaacatttcccatcctggatatacctgcccagccccttccctctgcttct
taccccaaactgcattccatgctttcctcagatgctcaaaagcataccaa
gtgctatcaaaggcagggccaggaacaatgtgggtggagtcgggtggtgt
ctcgaatgactgatcaagaagtgaaggaaagaatgggtgctccatggggg
agaccaggaggccaggacttccccctaagttagaggggacctctatggat
gcatatacccaagactaggactgcacaaccacatacccaattgctcaagg
tcctggggcagctcctagaggccccttcttccccctgcctccctcccaga
ccctcccacctgcagtccgacccgctgctgccaccgtgtggtcacaacca
tacttctctgaaaagagctatctgcaagaaacaagaaccaggaggagcct
gacctgtagtgcatagctcttcagactcaattcagagtctagacttaaag
acttgtgtgtgtgt
gaattcctgtggccttcatgactcaatactttatcaatatccaggaaaca
gagcgcttttactagtgacagtaactatgaccgcatgttgatcctatgtg
atctgccaggcacgtaggcattttacatggcctgtcaatcaatcctgagg
tgactccaatggccagagttggtatcctcatggagacactgtcaagatcc
caaggcctatagagctgcccctggcaggcagtgactctatggcctctgcc
agtgcccacacagtgacatctgcactctacaccctgcccccatccccggc
ctcccctgtggtcacagtataactggatagtgacaaccagaagtttctcc
tttccagaaaagaaatcccagcatgagggactgtgtcatggacatctcta
agtcctaaaccatcttgtagcaaaaacgtgggtttcagacaaacgaggaa
gattctaagcggtagatgtttctggagcttgtttgcccttgggtgaaccc
tgcactgctgcttgaaatcttgtgaaactggtctcggaacaaagtcctct
tggacatggcttgggatgtgtgtggcgtgatgtgtgacgcagggtgcgct
atggcatacgtgggctttgctggtgtaagcctgggagtcatgtgaatgaa
gcttggcctcattctagaggacatgagacattattatatttaagcagcac
tttctggtactgttgctgcttttagaggggttcttattctgtagtccagg
ctgacgtgaaacccacgatgtgagccaggctgtcctcgagctcaaccctc
caaaatcactccctgcctcagcctactaagtgttaggattataggcgcga
gccaccctttatcctttcccttgctccctttctttgtcctcatttctttc
tttctgtggtgctggtgatgaagtagaccctatgggtgctaggcaaacac
tgtgggtattcctggcctttacaaatatgggtgtttttttaaatataaga
tatttctaagttaccaaactggcttctactggtaccctcttcagcttcag
ctcagtgggaatcacagcggcccacacccagtctcatttggtgcctatgt
gatgtccatcggctacaaaggagtagcagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_89260683_89261547
seq2: B6Ng01-023L08.b_44_907 (reverse)

seq1  ACACACACACACGTCTTTAAGTCTAGACTCTGAATTGAGTCTGGAGGAGC  50
      ||||||||||| |||||||||||||||||||||||||||||| || ||||
seq2  ACACACACACAAGTCTTTAAGTCTAGACTCTGAATTGAGTCT-GAAGAGC  49

seq1  TATGCACTACAGGTCAGGCTCCTCCTGGTTCTTGTTTCTTGCAGATAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCACTACAGGTCAGGCTCCTCCTGGTTCTTGTTTCTTGCAGATAGCT  99

seq1  CTTTTCAGAGAAGTATGGTTGTGACCACACGGTGGCAGCAGCGGGTCGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCAGAGAAGTATGGTTGTGACCACACGGTGGCAGCAGCGGGTCGGA  149

seq1  CTGCAGGTGGGAGGGTCTGGGAGGGAGGCAGGGGGAAGAAGGGGCCTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGGTGGGAGGGTCTGGGAGGGAGGCAGGGGGAAGAAGGGGCCTCTA  199

seq1  GGAGCTGCCCCAGGACCTTGAGCAATTGGGTATGTGGTTGTGCAGTCCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTGCCCCAGGACCTTGAGCAATTGGGTATGTGGTTGTGCAGTCCTA  249

seq1  GTCTTGGGTATATGCATCCATAGAGGTCCCCTCTAACTTAGGGGGAAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGGGTATATGCATCCATAGAGGTCCCCTCTAACTTAGGGGGAAGTC  299

seq1  CTGGCCTCCTGGTCTCCCCCATGGAGCACCCATTCTTTCCTTCACTTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTCCTGGTCTCCCCCATGGAGCACCCATTCTTTCCTTCACTTCTT  349

seq1  GATCAGTCATTCGAGACACCACCCGACTCCACCCACATTGTTCCTGGCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGTCATTCGAGACACCACCCGACTCCACCCACATTGTTCCTGGCCC  399

seq1  TGCCTTTGATAGCACTTGGTATGCTTTTGAGCATCTGAGGAAAGCATGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTGATAGCACTTGGTATGCTTTTGAGCATCTGAGGAAAGCATGGA  449

seq1  ATGCAGTTTGGGGTAAGAAGCAGAGGGAAGGGGCTGGGCAGGTATATCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTTTGGGGTAAGAAGCAGAGGGAAGGGGCTGGGCAGGTATATCCA  499

seq1  GGATGGGAAATGTTCATACTCTGGACTGGAAAACATCTGGTTTTGGAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGGAAATGTTCATACTCTGGACTGGAAAACATCTGGTTTTGGAACC  549

seq1  AGATGGAGCTAATTTCATCATTTAGAGGTCTAGACCTTGATACAAGTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGAGCTAATTTCATCATTTAGAGGTCTAGACCTTGATACAAGTCTC  599

seq1  TCAGCCCCTTACTTAATTTTATGTATGTGAGTGTTTTGCCTGCACGTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCCCTTACTTAATTTTATGTATGTGAGTGTTTTGCCTGCACGTATA  649

seq1  TTAGTGCACCATATACACGCAGTGCCTATGGAGGCCAGAAGAGGCTGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGCACCATATACACGCAGTGCCTATGGAGGCCAGAAGAGGCTGTCA  699

seq1  AGATTCCCTGGAACTGGAGTTACAGATGGCTATGAATCACCCTGTGGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCCCTGGAACTGGAGTTACAGATGGCTATGAATCACCCTGTGGCTT  749

seq1  CGAACTCAGAGATCTTCCTGCCTCTGACTCCTGAGTGCTGAGATCAAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACTCAGAGATCTTCCTGCCTCTGACTCCTGAGTGCTGAGATCAAGAA  799

seq1  TGTGTGCCACCATTGCCTGGCTTAGGCAAATACATTCGGAAGTTTTGTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCCACCATTGCCTGGCTTAGGCAAATACATTCGGAAGTTTTGTGA  849

seq1  TTGGGACTAGAATTC  865
      |||||||||||||||
seq2  TTGGGACTAGAATTC  864

seq1: chr3_89097105_89098252
seq2: B6Ng01-023L08.g_68_1198

seq1  GAATTCCTGTGGCCTTCATGACTCAATACTTTATCAATATCCAGGAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTGGCCTTCATGACTCAATACTTTATCAATATCCAGGAAACA  50

seq1  GAGCGCTTTTACTAGTGACAGTAACTATGACCGCATGTTGATCCTATGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGCTTTTACTAGTGACAGTAACTATGACCGCATGTTGATCCTATGTG  100

seq1  ATCTGCCAGGCACGTAGGCATTTTACATGGCCTGTCAATCAATCCTGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCCAGGCACGTAGGCATTTTACATGGCCTGTCAATCAATCCTGAGG  150

seq1  TGACTCCAATGGCCAGAGTTGGTATCCTCATGGAGACACTGTCAAGATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCCAATGGCCAGAGTTGGTATCCTCATGGAGACACTGTCAAGATCC  200

seq1  CAAGGCCTATAGAGCTGCCCCTGGCAGGCAGTGACTCTATGGCCTCTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCCTATAGAGCTGCCCCTGGCAGGCAGTGACTCTATGGCCTCTGCC  250

seq1  AGTGCCCACACAGTGACATCTGCACTCTACACCCTGCCCCCATCCCCGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCCACACAGTGACATCTGCACTCTACACCCTGCCCCCATCCCCGGC  300

seq1  CTCCCCTGTGGTCACAGTATAACTGGATAGTGACAACCAGAAGTTTCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCTGTGGTCACAGTATAACTGGATAGTGACAACCAGAAGTTTCTCC  350

seq1  TTTCCAGAAAAGAAATCCCAGCATGAGGGACTGTGTCATGGACATCTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGAAAAGAAATCCCAGCATGAGGGACTGTGTCATGGACATCTCTA  400

seq1  AGTCCTAAACCATCTTGTAGCAAAAACGTGGGTTTCAGACAAACGAGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTAAACCATCTTGTAGCAAAAACGTGGGTTTCAGACAAACGAGGAA  450

seq1  GATTCTAAGCGGTAGATGTTTCTGGAGCTTGTTTGCCCTTGGGTGAACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTAAGCGGTAGATGTTTCTGGAGCTTGTTTGCCCTTGGGTGAACCC  500

seq1  TGCACTGCTGCTTGAAATCTTGTGAAACTGGTCTCGGAACAAAGTCCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTGCTGCTTGAAATCTTGTGAAACTGGTCTCGGAACAAAGTCCTCT  550

seq1  TGGACATGGCTTGGGATGTGTGTGGCGTGATGTGTGACGCAGGGTGCGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACATGGCTTGGGATGTGTGTGGCGTGATGTGTGACGCAGGGTGCGCT  600

seq1  ATGGCATACGTGGGCTTTGCTGGTGTAAGCCTGGGAGTCATGTGAATGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCATACGTGGGCTTTGCTGGTGTAAGCCTGGGAGTCATGTGAATGAA  650

seq1  GCTTGGCCTCATTCTAGAGGACATGAGACATTATTATATTTAAGCAGCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGCCTCATTCTAGAGGACATGAGACATTATTATATTTAAGCAGCAC  700

seq1  TTTCTGGTACTGTTGCTGCTTTTAGAGGGGTTCTTATTCTGTAGTCCAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGTACTGTTGCTGCTTTTAGAGGGGTTCTTATTCTGTAGTCCAGG  750

seq1  CTGACGTGAAACCCACGATGTGAGCCAGGCTGTCCTCGAGCTCAACCCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACGTGAAACCCACGATGTGAGCCAGGCTGTCCTCGAGCTCAACCCTC  800

seq1  CAAAATCACTCCCTGCCTCAGCCTACTAAGTGTTAGGATTATAGGCGCGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATCACTCCCTGCCTCAGCCTACTAAGTGTTAGGATTATAGGCGCGA  850

seq1  GCCACCCTTTATCCTTTCCCTTGCTCCCTTTCTTTTGTCCTCATTTCTTT  900
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GCCACCCTTTATCCTTTCCCTTGCTCCCTTTC-TTTGTCCTCATTTCTTT  899

seq1  CTTTCTGTGGTGCTGGTGATGAAGTAGACCCTATGGGTGCTAGGCAAACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGTGGTGCTGGTGATGAAGTAGACCCTATGGGTGCTAGGCAAACA  949

seq1  CTGTTGGGTTATTCCTGGCCTTTACAAATATGGGTTGTTTTTTTTTAAAT  1000
      ||||  || ||||||||||||||||||||||||   || |||||||||||
seq2  CTGT--GGGTATTCCTGGCCTTTACAAATATGG---GTGTTTTTTTAAAT  994

seq1  AATAAGATATTTCTAAGTTACCCAAACTGGCTTCTACCTTGTAACCCTCT  1050
       ||||||||||||||||||| ||||||||||||||||  ||  |||||||
seq2  -ATAAGATATTTCTAAGTTA-CCAAACTGGCTTCTAC--TGGTACCCTCT  1040

seq1  TCAGCTTCTAGCTCAGGTGGGATCACAGGCCGGGCCACCACCCAGTCCTC  1100
      |||||||| |||||||  || |||||||  ||| ||| |||||||| |||
seq2  TCAGCTTC-AGCTCAGTGGGAATCACAG--CGGCCCA-CACCCAGT-CTC  1085

seq1  ATTTTGTGGCCATGTGATGTCACTCGGTCACAAAGGATGTAGGCAGGA  1148
      |||| ||| | ||||||||||  ||||  |||||||| ||| ||||||
seq2  ATTTGGTGCCTATGTGATGTCCATCGGCTACAAAGGA-GTA-GCAGGA  1131