BAC Information

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BAC

Clone NameB6Ng01-023L13
Chromosome3 (Build37)
Map Location 96,402,221 - 96,561,404
singlet/doubletdoublet
Overlap geneAnkrd34, 6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35, Pias3, Polr3c, Zfp364
Upstream geneGolph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl
Downstream geneCd160, Pdzk1, Gpr89, Gja8, 9230114J08Rik, Gja5, Acp6, Bcl9, Olfr1402, Chd1l, Fmo5, Prkab2, Pde4dip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023L13.bB6Ng01-023L13.g
ACCDH855561DH855562
length811859
definitionDH855561|Mus musculus domesticus DNA, BAC clone: B6Ng01-023L13, 5' end.DH855562|Mus musculus domesticus DNA, BAC clone: B6Ng01-023L13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,560,596 - 96,561,404)(96,402,221 - 96,403,077)
sequence
gattcagtatgtatttcttctgtgaataggttatcctgttcttagattat
cctacccagccttcagggctacctcatccatgaactgtttctgacctcac
cgaccgagtatgactcctccacatccctctgcgctgactctggttctaag
ttctacctggcattactaatagataggatttgcctcaaccatctcaaccc
tttgatcctttcataaatataaaccgaaaggccaaaaactgtattttata
attaatacctcacatatatacatttattatttgtcagatgtcaactttga
aaacctggtgatggcatatcctacacttgtaactgcaaaataaaagttgc
cgaattaatagcacatgactaattgataaaatacctcttttcaaggaccc
aaaagaacagaaagaaattaaatcctgctacccatatgaaatttgcgaga
agaaagtggctagcactttttaaaagagaggaagaactgagtcacaaaaa
cctgctagaaagctcttccagcaacaaacagaagcaagcatcctaaccag
agcccttctaaggactgaaaactgccttcatcttcaggattacagtacta
ctccagacactgcactgagctcactgaggaaacaaacataccctagttta
agtctaaaaccaaagcaaatattgttcttttctgttcttgtctcaagcct
tggtctgatgagaaaccattccaaaacttgtgtttgtttaaaaggtaaaa
atactttttaaaaaattatttttagtatgcattcctataccaaataaata
cttgtacttga
gaattcaatggcttgaccctgaccgggagaccgcgtctttctcggcgtca
cagcaccgaaggcccggaggacccgcccccatgggcggagaaagtgacgg
gtgggggtcctctctcgcgccgaaacactgcgcccgaggctcaggagtct
ggtcttccttcagggctaaggcaaaaactgagccgcatggagccggtgga
gctcgacacccctggacatttttgccctgactcccccgagtccagccggt
tatccctggagcgccggcgatacagcgcctctccgctgaccctccctcca
gcgggctcagtttcctccccacgccagtcccaggaaagtctgcccggggc
tgtatccccgctgagcggacggaggcggagtccagggctgctagagagaa
ggggctccgggaccttgctcctggaccacatctcgcaaacacgaccaggt
ttcttgcctcctctcaacgtcagtccccaccctcccatccccgacattcg
tccccaacccggaggtcgggcaccctcactgcctgcccctccaccctctg
gggcaccagggtctcccaggaccaagcgcaagttggtgagacgccactcc
atgcagactgagcagattcgcctgctaggggggtttcagagtctaggtgg
gcctggggaacccgggcgctgaaggaaatgaggggcgccaaggaggggga
gggtcagtaccctgatagagggagaaccagctgatacctcggacacggga
tctctttgcatgtgctcctggcactgtgcacgcacacatgggtaagcatg
tgtcttgtccacaagcacagtacacttacttgcgagaggaaaaatactgg
tgtttaccg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_96560596_96561404
seq2: B6Ng01-023L13.b_34_843 (reverse)

seq1  TCAAGTACAAGTATTTATTTGGTATAGGTATTGCATAACTAAAATAATTT  50
      |||||||||||||||||||||||||||| | ||||||   ||||||||||
seq2  TCAAGTACAAGTATTTATTTGGTATAGG-AATGCATACTAAAAATAATTT  49

seq1  TTTAAAAAGTATTTTTAACCTTTTAAACAAACACAAGTTTTGG-ATGGTT  99
      |||||||||||||||| |||||||||||||||||||||||||| ||||||
seq2  TTTAAAAAGTATTTTT-ACCTTTTAAACAAACACAAGTTTTGGAATGGTT  98

seq1  TCTCATCAGACCAAGGCTTGAGACAAGTACAG-AAAGAACAATATTTGCT  148
      ||||||||||||||||||||||||||| |||| |||||||||||||||||
seq2  TCTCATCAGACCAAGGCTTGAGACAAGAACAGAAAAGAACAATATTTGCT  148

seq1  TTGGTTTTAGACTT-AACTAGGGTATGTTTGTTTCCTCAGTGAGCTCAGT  197
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTGGTTTTAGACTTAAACTAGGGTATGTTTGTTTCCTCAGTGAGCTCAGT  198

seq1  GCAGTGTCTGGAGTAGTACTGTAATCCTGAAGATGAAGGCAGTTTTCAGT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGTCTGGAGTAGTACTGTAATCCTGAAGATGAAGGCAGTTTTCAGT  248

seq1  CCTTAGAAGGGCTCTGGTTAGGATGCTTGCTTCTGTTTGTTGCTGGAAGA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGAAGGGCTCTGGTTAGGATGCTTGCTTCTGTTTGTTGCTGGAAGA  298

seq1  GCTTTCTAGCAGGTTTTTGTGACTCAGTTCTTCCTCTCTTTTAAAAAGTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTAGCAGGTTTTTGTGACTCAGTTCTTCCTCTCTTTTAAAAAGTG  348

seq1  CTAGCCACTTTCTTCTCGCAAATTTCATATGGGTAGCAGGATTTAATTTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCACTTTCTTCTCGCAAATTTCATATGGGTAGCAGGATTTAATTTC  398

seq1  TTTCTGTTCTTTTGGGTCCTTGAAAAGAGGTATTTTATCAATTAGTCATG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTTCTTTTGGGTCCTTGAAAAGAGGTATTTTATCAATTAGTCATG  448

seq1  TGCTATTAATTCGGCAACTTTTATTTTGCAGTTACAAGTGTAGGATATGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATTAATTCGGCAACTTTTATTTTGCAGTTACAAGTGTAGGATATGC  498

seq1  CATCACCAGGTTTTCAAAGTTGACATCTGACAAATAATAAATGTATATAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACCAGGTTTTCAAAGTTGACATCTGACAAATAATAAATGTATATAT  548

seq1  GTGAGGTATTAATTATAAAATACAGTTTTTGGCCTTTCGGTTTATATTTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGTATTAATTATAAAATACAGTTTTTGGCCTTTCGGTTTATATTTA  598

seq1  TGAAAGGATCAAAGGGTTGAGATGGTTGAGGCAAATCCTATCTATTAGTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGATCAAAGGGTTGAGATGGTTGAGGCAAATCCTATCTATTAGTA  648

seq1  ATGCCAGGTAGAACTTAGAACCAGAGTCAGCGCAGAGGGATGTGGAGGAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAGGTAGAACTTAGAACCAGAGTCAGCGCAGAGGGATGTGGAGGAG  698

seq1  TCATACTCGGTCGGTGAGGTCAGAAACAGTTCATGGATGAGGTAGCCCTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACTCGGTCGGTGAGGTCAGAAACAGTTCATGGATGAGGTAGCCCTG  748

seq1  AAGGCTGGGTAGGATAATCTAAGAACAGGATAACCTATTCACAGAAGAAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTGGGTAGGATAATCTAAGAACAGGATAACCTATTCACAGAAGAAA  798

seq1  TACATACTGAAT  809
      ||||||||||||
seq2  TACATACTGAAT  810

seq1: chr3_96402221_96403077
seq2: B6Ng01-023L13.g_67_925

seq1  GAATTCAATGGCTTGACCCTGACCGGGAGACCGCGTCTTTCTCGGCGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGGCTTGACCCTGACCGGGAGACCGCGTCTTTCTCGGCGTCA  50

seq1  CAGCACCGAAGGCCCGGAGGACCCGCCCCCATGGGCGGAGAAAGTGACGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACCGAAGGCCCGGAGGACCCGCCCCCATGGGCGGAGAAAGTGACGG  100

seq1  GTGGGGGTCCTCTCTCGCGCCGAAACACTGCGCCCGAGGCTCAGGAGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGGTCCTCTCTCGCGCCGAAACACTGCGCCCGAGGCTCAGGAGTCT  150

seq1  GGTCTTCCTTCAGGGCTAAGGCAAAAACTGAGCCGCATGGAGCCGGTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTCCTTCAGGGCTAAGGCAAAAACTGAGCCGCATGGAGCCGGTGGA  200

seq1  GCTCGACACCCCTGGACATTTTTGCCCTGACTCCCCCGAGTCCAGCCGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGACACCCCTGGACATTTTTGCCCTGACTCCCCCGAGTCCAGCCGGT  250

seq1  TATCCCTGGAGCGCCGGCGATACAGCGCCTCTCCGCTGACCCTCCCTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCTGGAGCGCCGGCGATACAGCGCCTCTCCGCTGACCCTCCCTCCA  300

seq1  GCGGGCTCAGTTTCCTCCCCACGCCAGTCCCAGGAAAGTCTGCCCGGGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGCTCAGTTTCCTCCCCACGCCAGTCCCAGGAAAGTCTGCCCGGGGC  350

seq1  TGTATCCCCGCTGAGCGGACGGAGGCGGAGTCCAGGGCTGCTAGAGAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCCCCGCTGAGCGGACGGAGGCGGAGTCCAGGGCTGCTAGAGAGAA  400

seq1  GGGGCTCCGGGACCTTGCTCCTGGACCACATCTCGCAAACACGACCAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTCCGGGACCTTGCTCCTGGACCACATCTCGCAAACACGACCAGGT  450

seq1  TTCTTGCCTCCTCTCAACGTCAGTCCCCACCCTCCCATCCCCGACATTCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGCCTCCTCTCAACGTCAGTCCCCACCCTCCCATCCCCGACATTCG  500

seq1  TCCCCAACCCGGAGGTCGGGCACCCTCACTGCCTGCCCCTCCACCCTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAACCCGGAGGTCGGGCACCCTCACTGCCTGCCCCTCCACCCTCTG  550

seq1  GGGCACCAGGGTCTCCCAGGACCAAGCGCAAGTTGGTGAGACGCCACTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACCAGGGTCTCCCAGGACCAAGCGCAAGTTGGTGAGACGCCACTCC  600

seq1  ATGCAGACTGAGCAGATTCGCCTGCTAGGGGGGTTTCAGAGTCTAGGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGACTGAGCAGATTCGCCTGCTAGGGGGGTTTCAGAGTCTAGGTGG  650

seq1  GCCTGGGGAACCCGGGCGCTGAAGGAAATGAGGGGCGCCAAGGAGGGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGGGAACCCGGGCGCTGAAGGAAATGAGGGGCGCCAAGGAGGGGGA  700

seq1  GGGTCAGTACCCTGATAGAGGGAGAACCAGCTGATACCTCGGACACGGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAGTACCCTGATAGAGGGAGAACCAGCTGATACCTCGGACACGGGA  750

seq1  TCTC-TTGCATGTGCTCCTGGCACTGTGCACGCACACATGGGTAAGCATG  799
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTGCATGTGCTCCTGGCACTGTGCACGCACACATGGGTAAGCATG  800

seq1  TGTC-TGTCCACAAGCACAGTACACTTACTAGCGAGAAGGATAAATACT-  847
      |||| ||||||||||||||||||||||||| ||||| |||| ||||||| 
seq2  TGTCTTGTCCACAAGCACAGTACACTTACTTGCGAG-AGGAAAAATACTG  849

seq1  GTGTTTACCG  857
      ||||||||||
seq2  GTGTTTACCG  859