BAC Information

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BAC

Clone NameB6Ng01-023L14
Chromosome12 (Build37)3 (Build37)
Map Location 5,542,587 - 5,543,60341,059,156 - 41,059,671
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100042014, Itsn2, 4930417G10Rik, A830093I24Rik, Pfn4, EG626534, 0610009D07Rik, Fkbp1b, BC068281, Gm1964, Ubxd4, Atad2b, LOC668332, Klhl29, 2810032G03Rik
Downstream geneLOC435292, LOC100042095, LOC672098, LOC100043137, LOC238049, LOC100042118
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023L14.bB6Ng01-023L14.g
ACCDH855563DH855564
length1,014582
definitionDH855563|Mus musculus domesticus DNA, BAC clone: B6Ng01-023L14, 5' end.DH855564|Mus musculus domesticus DNA, BAC clone: B6Ng01-023L14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(5,542,587 - 5,543,603)(41,059,156 - 41,059,671)
sequence
gaattctagattgcctttagaaactttattcagttttattccttgacagt
ttcatacatgtgcttaaggatttttgattgtttccactttctctcatcct
tcatccctctcctgccagaacctttcttcccatcaagcctcctgtctaat
tttatttaattgatcccctgaatttacttgcgtggctgttgatcatttac
gtatttttaaggcagggtttcatgtagcctgggatggccccaaacttgct
atgaggttggccttaaactactggtctcctgcctttacctctaaattgtt
ataattaaaggtataaactacactgtatattggatcagggaatattatcc
gttttgtgttatttttatagcaaaataataagagttaagtagacaagcaa
gataaccagctctgtggaacagtagccacattttagttaagttacttcat
gtctatggattgtcattttttggccaaaaagagaagaccaaagccctaat
atgatgtcaacttctccttgagcagggctttcttgtattgtgcagtagga
tatggtcactggtattcaactgtgtgatcaccccccaccctccatcccca
ccccccggttggtgatgtctttacacgaggttttattcagagatgaagac
aactaactggaaaaacctcaactgatgtctgggataaggtggctgattag
aagtgatcttcacatgatgcagggtcaaaatatggaaatctctaccccaa
agaggcagagactgaaagagtactagcaaccacaaagaggttgataggat
ggctgaaaagtgcaggtaaacatggaaggcaattgaagaataaagtatgg
ggttgtactttgctcaagctgcagaggttccataaagctaactgagtcat
cttgaagcaaagagactgggcattccacaggaggaacctttagttcttat
agtcttgggtccatcttgggacttgtgagatgtgtcagcagtgaggtcag
ttgggctgctctac
gaattctttgtttaactctgagcctcatttttattggggttatttgattt
tctggagtccaccttcttgagttctttatatatattggatattagtcccc
tatctgatttaggattggtaaagatcctttcccaatctgttggtggcctt
ttcatcttattgacagtgtcttttgccttgcagaagctttgcaattttat
gaggtcccatttgtcaattctcgatcttacagcacaggccattgctgttc
tattcaggaattttccccctgtgcccatatcttcaaggctttccccactt
tctcctctataagtttcagtgtctccggttttatgtggagttccttgatc
cacttagatttgaccttagtacaaggagataagaatggatctatctgcat
tcttctacatgataaccgccagttgtgacagcaccatttgttgaaaatgc
tgtcttttttccactagatggttttagctcccttgtcaaagatcaagtga
ccataggtgtgtgggttcattcctaggttttcaattctattcagttgatc
tacctgtctgtcgttgtaccagtaccatgcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_5542587_5543603
seq2: B6Ng01-023L14.b_45_1057

seq1  GAATTCTAGATTGCCTTTAGAAACTTTATTCAGTTTTATTCCTTGACAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGATTGCCTTTAGAAACTTTATTCAGTTTTATTCCTTGACAGT  50

seq1  TTCATACATGTGCTTAAGGATTTTTGATTGTTTCCACTTTCTCTCATCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATACATGTGCTTAAGGATTTTTGATTGTTTCCACTTTCTCTCATCCT  100

seq1  TCATCCCTCTCCTGCCAGAACCTTTCTTCCCATCAAGCCTCCTGTCTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCCTCTCCTGCCAGAACCTTTCTTCCCATCAAGCCTCCTGTCTAAT  150

seq1  TTTATTTAATTGATCCCCTGAATTTACTTGCGTGGCTGTTGATCATTTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTAATTGATCCCCTGAATTTACTTGCGTGGCTGTTGATCATTTAC  200

seq1  GTATTTTTAAGGCAGGGTTTCATGTAGCCTGGGATGGCCCCAAACTTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTTAAGGCAGGGTTTCATGTAGCCTGGGATGGCCCCAAACTTGCT  250

seq1  ATGAGGTTGGCCTTAAACTACTGGTCTCCTGCCTTTACCTCTAAATTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGTTGGCCTTAAACTACTGGTCTCCTGCCTTTACCTCTAAATTGTT  300

seq1  ATAATTAAAGGTATAAACTACACTGTATATTGGATCAGGGAATATTATCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTAAAGGTATAAACTACACTGTATATTGGATCAGGGAATATTATCC  350

seq1  GTTTTGTGTTATTTTTATAGCAAAATAATAAGAGTTAAGTAGACAAGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTGTTATTTTTATAGCAAAATAATAAGAGTTAAGTAGACAAGCAA  400

seq1  GATAACCAGCTCTGTGGAACAGTAGCCACATTTTAGTTAAGTTACTTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACCAGCTCTGTGGAACAGTAGCCACATTTTAGTTAAGTTACTTCAT  450

seq1  GTCTATGGATTGTCATTTTTTGGCCAAAAAGAGAAGACCAAAGCCCTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATGGATTGTCATTTTTTGGCCAAAAAGAGAAGACCAAAGCCCTAAT  500

seq1  ATGATGTCAACTTCTCCTTGAGCAGGGCTTTCTTGTATTGTGCAGTAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGTCAACTTCTCCTTGAGCAGGGCTTTCTTGTATTGTGCAGTAGGA  550

seq1  TATGGTCACTGGTATTCAACTGTGTGATCACCCCCCACCCTCCATCCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTCACTGGTATTCAACTGTGTGATCACCCCCCACCCTCCATCCCCA  600

seq1  CCCCCCGGTTGGTGATGTCTTTACACGAGGTTTTATTCAGAGATGAAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCGGTTGGTGATGTCTTTACACGAGGTTTTATTCAGAGATGAAGAC  650

seq1  AACTAACTGGAAAAACCTCAACTGATGTCTGGGATAAGGTGGCTGATTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAACTGGAAAAACCTCAACTGATGTCTGGGATAAGGTGGCTGATTAG  700

seq1  AAGTGATCTTCACATGATGCAGGGTCAAAATATGGAAATCTCTACCCCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGATCTTCACATGATGCAGGGTCAAAATATGGAAATCTCTACCCCAA  750

seq1  AGAGGCAGAGACTGAAAGAGTACTAGCAACCACAAAGAGGTTGATAGGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAGAGACTGAAAGAGTACTAGCAACCACAAAGAGGTTGATAGGAT  800

seq1  GGCTGAAAAGTGCAGGTAAACATGG-AGGCAA-TGAAGAATAAAGTATGG  848
      ||||||||||||||||||||||||| |||||| |||||||||||||||||
seq2  GGCTGAAAAGTGCAGGTAAACATGGAAGGCAATTGAAGAATAAAGTATGG  850

seq1  GGTTGTACCTTGCTCCAGCTGCAGAGGCTCCATTAAAGCTAACTGAGTCA  898
      |||||||| |||||| ||||||||||| |||| |||||||||||||||||
seq2  GGTTGTACTTTGCTCAAGCTGCAGAGGTTCCA-TAAAGCTAACTGAGTCA  899

seq1  TC-TGAAGCAAAGAGACTGGCAATTCCACAGGAGGAACCCTTAGTTCTTA  947
      || |||||||||||||||||  ||||||||||||||||| ||||||||||
seq2  TCTTGAAGCAAAGAGACTGGGCATTCCACAGGAGGAACCTTTAGTTCTTA  949

seq1  TAAGTCCTTGGGTCCATCTTGGGACTTGGTGAGATGTGGTCAGCAGTGGA  997
      | ||| ||||||||||||||||||||| ||||||||| ||||||||| ||
seq2  T-AGT-CTTGGGTCCATCTTGGGACTT-GTGAGATGT-GTCAGCAGT-GA  994

seq1  GGTCAGTTTGGGCTGCTCTA  1017
      |||||| |||||||||||||
seq2  GGTCAG-TTGGGCTGCTCTA  1013

seq1: chr3_41059156_41059671
seq2: B6Ng01-023L14.g_135_650 (reverse)

seq1  CTGCATGGTACTGGTATAGTGACAGACAAGCAGACCAATGGAATAGAATT  50
      |||||||||||||||| |  |||||||| | ||| |||  ||||||||||
seq2  CTGCATGGTACTGGTACAACGACAGACAGGTAGATCAACTGAATAGAATT  50

seq1  GAAGACTCAGAAACGAATCCACACACCTATGGTCACTTGATCTTCGACAA  100
      ||| ||  || || ||| |||||||||||||||||||||||||| |||||
seq2  GAAAACCTAGGAATGAACCCACACACCTATGGTCACTTGATCTTTGACAA  100

seq1  GGGAGCTAAAACCATCCAGTGGAAAAAAGACAGCATTTTCAACAAATGGT  150
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GGGAGCTAAAACCATCTAGTGGAAAAAAGACAGCATTTTCAACAAATGGT  150

seq1  GCTGGCACAACTGGTTGTTATCATGTAGAAGAATGCGAATTGATCCACTC  200
      |||| |||||||||  ||||||||||||||||||||  || |||||| ||
seq2  GCTGTCACAACTGGCGGTTATCATGTAGAAGAATGCAGATAGATCCATTC  200

seq1  CTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACGCCACAT  250
       |||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTCCACAT  250

seq1  AAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTG  300
      |||||| ||||||||||||||||||||||||||||||||| |||||||||
seq2  AAAACCGGAGACACTGAAACTTATAGAGGAGAAAGTGGGG-AAAGCCTTG  299

seq1  AAGATATGGTCACAGGGGAAAAATTCCTGCATAGAACAGCAATGGCTTGT  350
      ||||||||| |||||||| |||||||||| |||||||||||||||| |||
seq2  AAGATATGGGCACAGGGGGAAAATTCCTGAATAGAACAGCAATGGCCTGT  349

seq1  GCTGTAAGATTGAGAATAGACAAATGGGACCTCATGAAACTGCAAAGCTT  400
      |||||||||| |||||| ||||||||||||||||| ||| ||||||||||
seq2  GCTGTAAGATCGAGAATTGACAAATGGGACCTCATAAAATTGCAAAGCTT  399

seq1  CTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGG-CACCAACAGATT  449
      |||||||||||||||||| ||||||||||  |||||| ||||||||||||
seq2  CTGCAAGGCAAAAGACACTGTCAATAAGATGAAAAGGCCACCAACAGATT  449

seq1  GGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAAT  499
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GGGAAAGGATCTTTACCAATCCTAAATCAGATAGGGGACTAATATCCAAT  499

seq1  ATATATCAAGAACTCAA  516
      |||||| ||||||||||
seq2  ATATATAAAGAACTCAA  516