BAC Information

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BAC

Clone NameB6Ng01-023N05
Chromosome3 (Build37)
Map Location 119,753,907 - 119,891,225
singlet/doubletdoublet
Overlap genenone
Upstream geneDpyd, LOC100043275, LOC100043278, Ptbp2
Downstream gene2510027J23Rik, LOC435752
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023N05.bB6Ng01-023N05.g
ACCDH855638DH855639
length1,0021,063
definitionDH855638|Mus musculus domesticus DNA, BAC clone: B6Ng01-023N05, 5' end.DH855639|Mus musculus domesticus DNA, BAC clone: B6Ng01-023N05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,890,220 - 119,891,225)(119,753,907 - 119,754,970)
sequence
gaattccctcatatgcagttcacgaaacaacaatgccaaagaacatctag
ggaaaaaaagatttccagtttcaagtgagagtgtcatgtctgccaccctt
aatgacatctggggaatttgcattgaattgagaagttctgtattggactt
acctttcagcaatataattttgacagtcattggctaaatacaaatatctc
aatttttctctttgtctttaggcatgtggtaaggtgattactcagtcttg
attttatttgtgcttaaatgacttcctcatgcacacacatgtacatgtgc
actcgagcgcacgctcgcgctcgcgcgcgcgcgcacacacacacacacac
acacgcgcgcgcgctcgctgaaccctttgatttctaggtggagtgacttg
gtgtccctccccctttctggccttgacactgcaagaacatgaactacatg
aagctctaatcactctgagtcaccaggtgacagggagcagagccccttct
ttggttgacctgactgagacgtcagtttttttgttgttctgaattttgag
acagagccaattttgtgtcatgcaggattcggtgagtggaaactgcaacc
ttgctgtagcaagcactaagcttcacagtaggtgttcaggagtggggctg
tgaattagaaaaaattgttcacagaatgtaaaagggcaacgaggtgtttt
tagtatcaaaacacctgatggtgaaatcaattcggagaggctttattagg
cagcacgccttggacaatgctgatttacagtattgcctatactactgtat
tttctctccagatgctaattaccaaaagcaaatacataaataaaattcta
ataacatagcaaatgagagaatatgtatctaatatttccttgtaactgtt
cattgcttcctgaagttccctcacttgaagagctcttatgattgctggtc
ttcagcagttctactggttgtgggcaggaggatgctcgagattgagcgtg
gg
gaattcttctgcaagctcctccgtgcagctgaccagatgctgcattgcct
tcccgcctcgctgactacgtagcttctgaagcccatgacccttgtccagt
ctcctgactcccttgttttatctgttttctagattcagaacctcatgggc
atcccagcatgagagctttcacaacccatcctgcctccatcaaaccctgt
ccagcaagtcatttatttctgatgtgacaacaaatcatgccactgaccta
tattgagtaccatgctctcctaatgatcaataccagcattcacagcttga
aggaacatctgcgacaaaacagtattggaaaggtcaacgcctgttcttgg
agatggattcgtttcactttttccttttttcacttggacagtttctatac
aaactggggcttcctgaagagagcaattatatgttctgctgttttgcatg
aggtatcagcatctcctaataattctttctgaaaaaatatttataaagta
taagtattaaacagaagaatacgtaaaggaatctggagaaaaaaagatac
atgggctgtctgagggtgaattttaatttcttttttcaggcagatttttt
tttatttttacatctgttttaatagtccctggaaaaataaaagagtgaac
gtgttcagcaaaatggtctagccaacaggagaattttcaggaattccaag
tgggataaatttacattttaaaaaattcaattgtatagaggttcaaaaag
tttttaaaaagtaagagtcttcaatatttttcttttaaagtgtttcagaa
tgtattacttatttaaatagtagtacttatttatttaactgccaagcatt
tcatgccttttgaaatgtatcatttagaacatgtgtttttttaaagctaa
ttccccaacatattgcacatgtaatttgaaattagtcagtgtgaaaaata
aaatattttaacaattatttggagaatttaatacagtatgctttgatggt
attgattctccctcaactcttcctggagacaccttctacaaactccctat
ggattccaccttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_119890220_119891225
seq2: B6Ng01-023N05.b_46_1047 (reverse)

seq1  CCCACGCTCAATCTCCAGCATCCTCCTGCCCACACACAGTGAAGCTGCTG  50
      ||||||||||||||| ||||||||||||||||||  ||||  | ||||||
seq2  CCCACGCTCAATCTCGAGCATCCTCCTGCCCACAACCAGTAGAACTGCTG  50

seq1  GAGACCAGCAATTCATAAGAGCATCTCAGGTGAGGTGAACCTCAGGAAGC  100
       |||||||||| ||||||||||   ||| |||||| |||| |||||||||
seq2  AAGACCAGCAA-TCATAAGAGCTCTTCAAGTGAGG-GAACTTCAGGAAGC  98

seq1  AATGAACAAGTTACAAGGAAATATTAGATACATATTCTTCTCATTTGCTA  150
      ||||||| ||||||||||||||||||||||||||||| ||||||||||||
seq2  AATGAAC-AGTTACAAGGAAATATTAGATACATATTC-TCTCATTTGCTA  146

seq1  TGTTATTAGAATTTTATTTATGTATTTGCTTTTGGTAATTAGCATCTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTAGAATTTTATTTATGTATTTGCTTTTGGTAATTAGCATCTGGA  196

seq1  GAGAAAATACAGTAGTATAGGCAATACTGTAAATCAGCATTGTCCAAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAATACAGTAGTATAGGCAATACTGTAAATCAGCATTGTCCAAGGC  246

seq1  GTGCTGCCTAATAAAGCCTCTCCGAATTGATTTCACCATCAGGTGTTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGCCTAATAAAGCCTCTCCGAATTGATTTCACCATCAGGTGTTTTG  296

seq1  ATACTGAAAACACCTCGTTGCCCTTTTACATTCTGTGAACAATTTTTTCT  350
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTAAAAACACCTCGTTGCCCTTTTACATTCTGTGAACAATTTTTTCT  346

seq1  AATTCACAGCCCCACTCCTGAACACCTACTGTGAAGCTTAGTGCTTGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCACAGCCCCACTCCTGAACACCTACTGTGAAGCTTAGTGCTTGCTA  396

seq1  CAGCAAGGTTGCAGTTTCCACTCACCGAATCCTGCATGACACAAAATTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGGTTGCAGTTTCCACTCACCGAATCCTGCATGACACAAAATTGG  446

seq1  CTCTGTCTCAAAATTCAGAACAACAAAAAAACTGACGTCTCAGTCAGGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCTCAAAATTCAGAACAACAAAAAAACTGACGTCTCAGTCAGGTC  496

seq1  AACCAAAGAAGGGGCTCTGCTCCCTGTCACCTGGTGACTCAGAGTGATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAAGAAGGGGCTCTGCTCCCTGTCACCTGGTGACTCAGAGTGATTA  546

seq1  GAGCTTCATGTAGTTCATGTTCTTGCAGTGTCAAGGCCAGAAAGGGGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTCATGTAGTTCATGTTCTTGCAGTGTCAAGGCCAGAAAGGGGGAG  596

seq1  GGACACCAAGTCACTCCACCTAGAAATCAAAGGGTTCAGCGAGCGCGCGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACCAAGTCACTCCACCTAGAAATCAAAGGGTTCAGCGAGCGCGCGC  646

seq1  GCGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCGAGCGCGAGCGTGCGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCGAGCGCGAGCGTGCGC  696

seq1  TCGAGTGCACATGTACATGTGTGTGCATGAGGAAGTCATTTAAGCACAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGTGCACATGTACATGTGTGTGCATGAGGAAGTCATTTAAGCACAAA  746

seq1  TAAAATCAAGACTGAGTAATCACCTTACCACATGCCTAAAGACAAAGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCAAGACTGAGTAATCACCTTACCACATGCCTAAAGACAAAGAGA  796

seq1  AAAATTGAGATATTTGTATTTAGCCAATGACTGTCAAAATTATATTGCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGAGATATTTGTATTTAGCCAATGACTGTCAAAATTATATTGCTG  846

seq1  AAAGGTAAGTCCAATACAGAACTTCTCAATTCAATGCAAATTCCCCAGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTAAGTCCAATACAGAACTTCTCAATTCAATGCAAATTCCCCAGAT  896

seq1  GTCATTAAGGGTGGCAGACATGACACTCTCACTTGAAACTGGAAATCTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTAAGGGTGGCAGACATGACACTCTCACTTGAAACTGGAAATCTTT  946

seq1  TTTTCCCTAGATGTTCTTTGGCATTGTTGTTTCGTGAACTGCATATGAGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCTAGATGTTCTTTGGCATTGTTGTTTCGTGAACTGCATATGAGG  996

seq1  GAATTC  1006
      ||||||
seq2  GAATTC  1002

seq1: chr3_119753907_119754970
seq2: B6Ng01-023N05.g_68_1130

seq1  GAATTCTTCTGCAAGCTCCTCCGTGCAGCTGACCAGATGCTGCATTGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTGCAAGCTCCTCCGTGCAGCTGACCAGATGCTGCATTGCCT  50

seq1  TCCCGCCTCGCTGACTACGTAGCTTCTGAAGCCCATGACCCTTGTCCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGCCTCGCTGACTACGTAGCTTCTGAAGCCCATGACCCTTGTCCAGT  100

seq1  CTCCTGACTCCCTTGTTTTATCTGTTTTCTAGATTCAGAACCTCATGGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGACTCCCTTGTTTTATCTGTTTTCTAGATTCAGAACCTCATGGGC  150

seq1  ATCCCAGCATGAGAGCTTTCACAACCCATCCTGCCTCCATCAAACCCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGCATGAGAGCTTTCACAACCCATCCTGCCTCCATCAAACCCTGT  200

seq1  CCAGCAAGTCATTTATTTCTGATGTGACAACAAATCATGCCACTGACCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAAGTCATTTATTTCTGATGTGACAACAAATCATGCCACTGACCTA  250

seq1  TATTGAGTACCATGCTCTCCTAATGATCAATACCAGCATTCACAGCTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAGTACCATGCTCTCCTAATGATCAATACCAGCATTCACAGCTTGA  300

seq1  AGGAACATCTGCGACAAAACAGTATTGGAAAGGTCAACGCCTGTTCTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACATCTGCGACAAAACAGTATTGGAAAGGTCAACGCCTGTTCTTGG  350

seq1  AGATGGATTCGTTTCACTTTTTCCTTTTTTCACTTGGACAGTTTCTATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGATTCGTTTCACTTTTTCCTTTTTTCACTTGGACAGTTTCTATAC  400

seq1  AAACTGGGGCTTCCTGAAGAGAGCAATTATATGTTCTGCTGTTTTGCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGGGGCTTCCTGAAGAGAGCAATTATATGTTCTGCTGTTTTGCATG  450

seq1  AGGTATCAGCATCTCCTAATAATTCTTTCTGAAAAAATATTTATAAAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATCAGCATCTCCTAATAATTCTTTCTGAAAAAATATTTATAAAGTA  500

seq1  TAAGTATTAAACAGAAGAATACGTAAAGGAATCTGGAGAAAAAAAGATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTATTAAACAGAAGAATACGTAAAGGAATCTGGAGAAAAAAAGATAC  550

seq1  ATGGGCTGTCTGAGGGTGAATTTTAATTTCTTTTTTCAGGCAGATTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCTGTCTGAGGGTGAATTTTAATTTCTTTTTTCAGGCAGATTTTTT  600

seq1  TTTATTTTTACATCTGTTTTAATAGTCCCTGGAAAAATAAAAGAGTGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTTACATCTGTTTTAATAGTCCCTGGAAAAATAAAAGAGTGAAC  650

seq1  GTGTTCAGCAAAATGGTCTAGCCAACAGGAGAATTTTCAGGAATTCCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCAGCAAAATGGTCTAGCCAACAGGAGAATTTTCAGGAATTCCAAG  700

seq1  TGGGATAAATTTACATTTTAAAAAATTCAATTGTATAGAGGTTCAAAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATAAATTTACATTTTAAAAAATTCAATTGTATAGAGGTTCAAAAAG  750

seq1  TTTTTAAAAAGTAAGAGTCTTCAA-ATATTTTCTTTAAAGTGTTTCAGAA  799
      |||||||||||||||||||||||| || |||  |||||||||||||||||
seq2  TTTTTAAAAAGTAAGAGTCTTCAATATTTTTCTTTTAAAGTGTTTCAGAA  800

seq1  TGTATTACTTATTTAAATAGTAGTACTTATTTATTTAACTGCCAAGCATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTACTTATTTAAATAGTAGTACTTATTTATTTAACTGCCAAGCATT  850

seq1  TCATGCC-TTTGAAATGTATCAATTTAGAACATGTGTTTTTTTAAAGCTA  898
      ||||||| ||||||||||||| ||||||||||||||||||||||||||||
seq2  TCATGCCTTTTGAAATGTATC-ATTTAGAACATGTGTTTTTTTAAAGCTA  899

seq1  ATTCCCCAACATATTGCAACATGTAATTTGAAATTAGTCAGGTGTGAAAA  948
      ||||||||||||||||| |||||||||||||||||||||| |||||||||
seq2  ATTCCCCAACATATTGC-ACATGTAATTTGAAATTAGTCA-GTGTGAAAA  947

seq1  ATTAAAATATTTTAACAATTATTT-GAGAATTTAATACAGTATGCTTTGA  997
      | |||||||||||||||||||||| |||||||||||||||||||||||||
seq2  A-TAAAATATTTTAACAATTATTTGGAGAATTTAATACAGTATGCTTTGA  996

seq1  TGGTATTGATCCCTCCCTCAACTCTTCCTGGAGACACCTCCTACAAACTC  1047
      ||||||||||  ||||||||||||||||||||||||||| ||||||||||
seq2  TGGTATTGAT-TCTCCCTCAACTCTTCCTGGAGACACCTTCTACAAACTC  1045

seq1  CCTAT-GATTCCAACTTG  1064
      ||||| ||||||| ||||
seq2  CCTATGGATTCCACCTTG  1063