BAC Information

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BAC

Clone NameB6Ng01-023N18
Chromosome3 (Build37)
Map Location 73,063,587 - 73,194,281
singlet/doubletdoublet
Overlap genenone
Upstream gene2010204N08Rik, Slitrk3
Downstream geneBche, LOC667425, LOC619764, LOC667434
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023N18.bB6Ng01-023N18.g
ACCDH855662DH855663
length6821,081
definitionDH855662|Mus musculus domesticus DNA, BAC clone: B6Ng01-023N18, 5' end.DH855663|Mus musculus domesticus DNA, BAC clone: B6Ng01-023N18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,063,587 - 73,064,268)(73,193,179 - 73,194,281)
sequence
gaattctacatgttcatacatgttctgttacattagagctcatactgtta
ggttgcttgggacatagcttgatgacattttagagacctttctctggacc
tgcattaatgatgtttcagtgtttttttcaaaaaaacattgaagttatac
cttcatatattggatggtaaatgagaattcagtagggtaggtcatcaggg
atggaaaattctaccagtttctctgtttctgaatgacacagttccaaatc
ttttacttctacagtggttataagcctggtttggatctgacttgttagct
ttgttctgtgctttcttctgaagtgtggttggtaatttttaaaggatagt
gaaagctctggaatatttctgctgctcaagaaactgagtaatttaacagc
agtgatttagtaagatgaacatttcaaaatacctgtctcgggctcccaat
ggaggagctagagaaagtagccaagtagctaaagggatctgcaaccctat
aggtggaacaacattatgaactaaccagtaccccggagctcttgactcta
gctgcatatgtatcaaaagatggcctagtcggccatcactggaaagagag
gcccattggacacgcaaactctatatgccccagtacaggggaacgccagg
gccaaaaagtgggagtgggtgggtaggggagt
gaattcccgggaaaagtaatggaaaactacaactatcatgtcatgtcata
aaaaggtaccaattaagtgctaataaggctgtaagctattgttcctcttc
aaaaagaaaatcatttgggtaattaatattctttttgaaactatgaaggg
gaaccttttaaaattttaattaatttattctttgacaatgtcacacatgt
gcataatatattctggtcacattcatcaccccagcctttcctatctccct
cccttccactaaatccttcctcttttcagccagtcatatttccatcatta
tgtctttgttttgtttcattttgtctttattttgtgctatcaactattta
accaggacatgtcacatgtttcctactatccatataagcatgtgtaacaa
gctcgtttggtgatatagcattagagaaaatgacttcctatcaaccagca
gccattgttgcagagctgatagagtggtccagtattgtgcatgcctgttc
tataactatagctgctgagagttcatgagtgagttggctctgtcacattt
agaggacattattttattgccattcttcctatccttagattgttatcctt
ctactccctcttcctggacacttcctgagttttgtaatgtataatgtaca
cattctgttgggtaatgaatactccaccaggatttattcctatcacctcc
actggccttgaagaaactaatttttaaaaaggagacgtgtttactgaaga
acttttctactcagcctttggttcataatatagtaatatataaggaatat
taaaatctatttttccattttataaattgattggctgaaatgtttggatc
tctcttatgccaactatctacattctaaattcataaataccaaatgattt
tgaacttgatcaatatggtttgtatttgtagtaaatatctactactatac
tgaagcagctatgtgtcagacttgagaaccaaatagctactgagatattt
taggactactatttatttgagatgcccagaagaatagatggatcaaactg
gagctattattgagagatgtgccatgactaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_73063587_73064268
seq2: B6Ng01-023N18.b_45_726

seq1  GAATTCTACATGTTCATACATGTTCTGTTACATTAGAGCTCATACTGTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACATGTTCATACATGTTCTGTTACATTAGAGCTCATACTGTTA  50

seq1  GGTTGCTTGGGACATAGCTTGATGACATTTTAGAGACCTTTCTCTGGACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCTTGGGACATAGCTTGATGACATTTTAGAGACCTTTCTCTGGACC  100

seq1  TGCATTAATGATGTTTCAGTGTTTTTTTCAAAAAAACATTGAAGTTATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTAATGATGTTTCAGTGTTTTTTTCAAAAAAACATTGAAGTTATAC  150

seq1  CTTCATATATTGGATGGTAAATGAGAATTCAGTAGGGTAGGTCATCAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATATATTGGATGGTAAATGAGAATTCAGTAGGGTAGGTCATCAGGG  200

seq1  ATGGAAAATTCTACCAGTTTCTCTGTTTCTGAATGACACAGTTCCAAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAATTCTACCAGTTTCTCTGTTTCTGAATGACACAGTTCCAAATC  250

seq1  TTTTACTTCTACAGTGGTTATAAGCCTGGTTTGGATCTGACTTGTTAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTTCTACAGTGGTTATAAGCCTGGTTTGGATCTGACTTGTTAGCT  300

seq1  TTGTTCTGTGCTTTCTTCTGAAGTGTGGTTGGTAATTTTTAAAGGATAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTGTGCTTTCTTCTGAAGTGTGGTTGGTAATTTTTAAAGGATAGT  350

seq1  GAAAGCTCTGGAATATTTCTGCTGCTCAAGAAACTGAGTAATTTAACAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCTCTGGAATATTTCTGCTGCTCAAGAAACTGAGTAATTTAACAGC  400

seq1  AGTGATTTAGTAAGATGAACATTTCAAAATACCTGTCTCGGGCTCCCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATTTAGTAAGATGAACATTTCAAAATACCTGTCTCGGGCTCCCAAT  450

seq1  GGAGGAGCTAGAGAAAGTAGCCAAGTAGCTAAAGGGATCTGCAACCCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGCTAGAGAAAGTAGCCAAGTAGCTAAAGGGATCTGCAACCCTAT  500

seq1  AGGTGGAACAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGAACAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTA  550

seq1  GCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAG  600

seq1  GCCCATTGGACACGCAAACTCTATATGCCCCAGTACAGGGGAACGCCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATTGGACACGCAAACTCTATATGCCCCAGTACAGGGGAACGCCAGG  650

seq1  GCCAAAAAGTGGGAGTGGGTGGGTAGGGGAGT  682
      ||||||||||||||||||||||||||||||||
seq2  GCCAAAAAGTGGGAGTGGGTGGGTAGGGGAGT  682

seq1: chr3_73193179_73194281
seq2: B6Ng01-023N18.g_69_1149 (reverse)

seq1  TTAGTCCATTGGCAACATCTCTTCAATATTAGCTCCAGTTTTGATCCATT  50
      ||||||   |||| ||||||| |||||| ||||||||| |||||||||  
seq2  TTAGTC--ATGGC-ACATCTC-TCAATAATAGCTCCAG-TTTGATCCA--  43

seq1  TCTATTTCTTCTGTGCAATCTCATATTAAATATGTAGTTCCTAAAATTAT  100
      |||| |||||||| || |||||| | |||||| |||| |||||||| |||
seq2  TCTA-TTCTTCTGGGC-ATCTCA-AATAAATA-GTAG-TCCTAAAA-TAT  87

seq1  CTCAGTAGCTTATTTGGTGTCTTCAAGTCTTGACACATAGCTGCCTTCAG  150
      ||||||||| |||||||| || ||||||| ||||||||||||| ||||||
seq2  CTCAGTAGC-TATTTGGT-TC-TCAAGTC-TGACACATAGCTG-CTTCAG  132

seq1  TATAGTAGTAGATTATTTACTAACAAATACAAACCAATATTGATCAAGTT  200
      |||||||||||| |||||||| ||||||||||||| ||||||||||||||
seq2  TATAGTAGTAGA-TATTTACT-ACAAATACAAACC-ATATTGATCAAGTT  179

seq1  CAAAATCATTTGGTATTTATGAATTTAGAATGTAGATAGTTGGCATAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATCATTTGGTATTTATGAATTTAGAATGTAGATAGTTGGCATAAGA  229

seq1  GAGATCCAAACATTTCAGCCAATCAATTTATAAAATGGAAAAATAGATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCCAAACATTTCAGCCAATCAATTTATAAAATGGAAAAATAGATTT  279

seq1  TAATATTTCCTTATATATTACTATATTATGAACCAAAGGCTGAGTAGAAA  350
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATA-TTCCTTATATATTACTATATTATGAACCAAAGGCTGAGTAGAAA  328

seq1  AGTTCTTCAGTAAACACGTCTCCTTTTTAAAAATTAGTTTCTTCAAGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTCAGTAAACACGTCTCCTTTTTAAAAATTAGTTTCTTCAAGGCC  378

seq1  AGTGGAGGTGATAGGAATAAATCCTGGTGGAGTATTCATTACCCAACAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAGGTGATAGGAATAAATCCTGGTGGAGTATTCATTACCCAACAGA  428

seq1  ATGTGTACATTATACATTACAAAACTCAGGAAGTGTCCAGGAAGAGGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTACATTATACATTACAAAACTCAGGAAGTGTCCAGGAAGAGGGAG  478

seq1  TAGAAGGATAACAATCTAAGGATAGGAAGAATGGCAATAAAATAATGTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGGATAACAATCTAAGGATAGGAAGAATGGCAATAAAATAATGTCC  528

seq1  TCTAAATGTGACAGAGCCAACTCACTCATGAACTCTCAGCAGCTATAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATGTGACAGAGCCAACTCACTCATGAACTCTCAGCAGCTATAGTT  578

seq1  ATAGAACAGGCATGCACAATACTGGACCACTCTATCAGCTCTGCAACAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAACAGGCATGCACAATACTGGACCACTCTATCAGCTCTGCAACAAT  628

seq1  GGCTGCTGGTTGATAGGAAGTCATTTTCTCTAATGCTATATCACCAAACG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCTGGTTGATAGGAAGTCATTTTCTCTAATGCTATATCACCAAACG  678

seq1  AGCTTGTTACACATGCTTATATGGATAGTAGGAAACATGTGACATGTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGTTACACATGCTTATATGGATAGTAGGAAACATGTGACATGTCCT  728

seq1  GGTTAAATAGTTGATAGCACAAAATAAAGACAAAATGAAACAAAACAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAATAGTTGATAGCACAAAATAAAGACAAAATGAAACAAAACAAAG  778

seq1  ACATAATGATGGAAATATGACTGGCTGAAAAGAGGAAGGATTTAGTGGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAATGATGGAAATATGACTGGCTGAAAAGAGGAAGGATTTAGTGGAA  828

seq1  GGGAGGGAGATAGGAAAGGCTGGGGTGATGAATGTGACCAGAATATATTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGAGATAGGAAAGGCTGGGGTGATGAATGTGACCAGAATATATTA  878

seq1  TGCACATGTGTGACATTGTCAAAGAATAAATTAATTAAAATTTTAAAAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATGTGTGACATTGTCAAAGAATAAATTAATTAAAATTTTAAAAGG  928

seq1  TTCCCCTTCATAGTTTCAAAAAGAATATTAATTACCCAAATGATTTTCTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTTCATAGTTTCAAAAAGAATATTAATTACCCAAATGATTTTCTT  978

seq1  TTTGAAGAGGAACAATAGCTTACAGCCTTATTAGCACTTAATTGGTACCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGAGGAACAATAGCTTACAGCCTTATTAGCACTTAATTGGTACCT  1028

seq1  TTTTATGACATGACATGATAGTTGTAGTTTTCCATTACTTTTCCCGGGAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGACATGACATGATAGTTGTAGTTTTCCATTACTTTTCCCGGGAA  1078

seq1  TTC  1103
      |||
seq2  TTC  1081