BAC Information

Click to search

BAC

Clone NameB6Ng01-023N19
Chromosome3 (Build37)
Map Location 17,541,214 - 17,745,833
singlet/doubletdoublet
Overlap geneENSMUSG00000074674, LOC100040120
Upstream geneLOC100040034, LOC100040059, EG383936, LOC622737
Downstream geneCypt12, LOC545508, Bhlhb5, Cyp7b1, LOC622921, LOC100040153
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023N19.bB6Ng01-023N19.g
ACCDH855664DH855665
length973533
definitionDH855664|Mus musculus domesticus DNA, BAC clone: B6Ng01-023N19, 5' end.DH855665|Mus musculus domesticus DNA, BAC clone: B6Ng01-023N19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,744,855 - 17,745,833)(17,541,214 - 17,541,746)
sequence
gaattcagaccacaagcctgaggaattatctacatattcaaacatagaag
tgaccctcagcttcctcctttgactccttcattgtacttttcctattgga
caaagattgattttctgctattgccttacttgagtggcactctctctcca
ttcctatgaggcaacattttgaatggttacagaactcaacatgcaaacaa
acaaaggcactaatatatcaagaagtactccaggatactgaagtcattta
ttattacatgattatatcttgtgatttttttcctgctgattggaaagcac
tgtgctgtctccagataacaaatgttcagctagtaagacttatgagagtt
tgaacattgagacttgtagtatataatgtggaaatattaaaaacttggag
tgcttgagaaaggaaaatttattctaagtattaaatttaacttttaacaa
ctgtaccaagttgcaatttctagagatatatcccatcataatcagtcctt
cattgtgcctttgccaaacttaccaagttatgaagtttgtctcctcagca
agtgtctaggaggtggctactatttcaaccaattgagaacattttgtaaa
agggacaccatgtgacttctaggtgaaatcatagcaagctacctgctttt
acctagtctgtgggatcactagtgtgtctggaattccatgtgagccataa
agctatttctgaagttgccagaagataacgtagagaaatcagtattcatg
tacattgtcaactatcttcgtgttcaagtcttcctagcacagaaactgca
tttcagcgaactagtttgagatgactatagcccctcagacatcacttggc
ttctttatactctgtatccaattatccctacagttctttatctagttata
catccacagattctggaagcataacagaaccactgtttttagctgcccga
ctgcagactaacagcaagggttt
gaattccatattgtttgtgaaatagaaattgtattattggccctggcgtt
cccctgtactggggcatataaagtttgcatgtccaatgggcctctctttc
cagtgatggccgactaggccatcttttgatacatatgcagctagagtcaa
gagctccggggtactggttagttcataatgttccacctatagggttgcag
atccctttagctccttggctactttctctagctcctccattgggagccct
gtgatccatccattagctgactatgagcatccacttctgtgtttgctagg
tcccggcatagtctcacaagagacagctacatctgggtcctttcgataaa
aacttgctagtgtatgcaatagtgtcagcgtttggatgctgattatgggg
tggatccctggatttggcagtctctacatggaccatcctttcatctcagc
tccaaactttgtctctgtaactccttccaagggtgttttgttccctcttc
taaggaggggcatagtgtccacacttcagtctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_17744855_17745833
seq2: B6Ng01-023N19.b_44_1016 (reverse)

seq1  AAACCCTTGCTGTTTAGTCCTGCAGGTCGGGGCAGCTAAAAACAGTGGTT  50
      |||||||||||| ||||| ||||| ||| ||||||||||||||||||| |
seq2  AAACCCTTGCTG-TTAGT-CTGCA-GTC-GGGCAGCTAAAAACAGTGG-T  45

seq1  TCTGTTATGCTTCCAGAATCTGTGGATGTATAACTAGGATAAAGAACTGT  100
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCTGTTATGCTTCCAGAATCTGTGGATGTATAACTA-GATAAAGAACTGT  94

seq1  AGGGATAATTTGGATACAGAGTATAAAGAGCCAAAGTGATGTCTGAGGGG  150
      |||||||| ||||||||||||||||||||  | |||||||||||||||||
seq2  AGGGATAA-TTGGATACAGAGTATAAAGAAGCCAAGTGATGTCTGAGGGG  143

seq1  CTATAGTCATCTCAAACCTAGTTCGCTGAAATGCAGTTTCTGTGCTAGGA  200
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTATAGTCATCTCAAA-CTAGTTCGCTGAAATGCAGTTTCTGTGCTAGGA  192

seq1  AGACTTGAACACGAAGATAGTTGACAATGTACATGAATACTGATTTCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTGAACACGAAGATAGTTGACAATGTACATGAATACTGATTTCTCT  242

seq1  ACGTTATCTTCTGGCAACTTCAG-AATAGCTTTATGGCTCACATGGAATT  299
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ACGTTATCTTCTGGCAACTTCAGAAATAGCTTTATGGCTCACATGGAATT  292

seq1  CCAGACACACTAGTGATCCCACAGACTAGGTAAAAGCAGGTAGCTTGCTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACACACTAGTGATCCCACAGACTAGGTAAAAGCAGGTAGCTTGCTA  342

seq1  TGATTTCACCTAGAAGTCACATGGTGTCCCTTTTACAAAATGTTCTCAAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCACCTAGAAGTCACATGGTGTCCCTTTTACAAAATGTTCTCAAT  392

seq1  TGGTTGAAATAGTAGCCACCTCCTAGACACTTGCTGAGGAGACAAACTTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGAAATAGTAGCCACCTCCTAGACACTTGCTGAGGAGACAAACTTC  442

seq1  ATAACTTGGTAAGTTTGGCAAAGGCACAATGAAGGACTGATTATGATGGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTTGGTAAGTTTGGCAAAGGCACAATGAAGGACTGATTATGATGGG  492

seq1  ATATATCTCTAGAAATTGCAACTTGGTACAGTTGTTAAAAGTTAAATTTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCTCTAGAAATTGCAACTTGGTACAGTTGTTAAAAGTTAAATTTA  542

seq1  ATACTTAGAATAAATTTTCCTTTCTCAAGCACTCCAAGTTTTTAATATTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTAGAATAAATTTTCCTTTCTCAAGCACTCCAAGTTTTTAATATTT  592

seq1  CCACATTATATACTACAAGTCTCAATGTTCAAACTCTCATAAGTCTTACT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATTATATACTACAAGTCTCAATGTTCAAACTCTCATAAGTCTTACT  642

seq1  AGCTGAACATTTGTTATCTGGAGACAGCACAGTGCTTTCCAATCAGCAGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAACATTTGTTATCTGGAGACAGCACAGTGCTTTCCAATCAGCAGG  692

seq1  AAAAAAATCACAAGATATAATCATGTAATAATAAATGACTTCAGTATCCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATCACAAGATATAATCATGTAATAATAAATGACTTCAGTATCCT  742

seq1  GGAGTACTTCTTGATATATTAGTGCCTTTGTTTGTTTGCATGTTGAGTTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTACTTCTTGATATATTAGTGCCTTTGTTTGTTTGCATGTTGAGTTC  792

seq1  TGTAACCATTCAAAATGTTGCCTCATAGGAATGGAGAGAGAGTGCCACTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACCATTCAAAATGTTGCCTCATAGGAATGGAGAGAGAGTGCCACTC  842

seq1  AAGTAAGGCAATAGCAGAAAATCAATCTTTGTCCAATAGGAAAAGTACAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAGGCAATAGCAGAAAATCAATCTTTGTCCAATAGGAAAAGTACAA  892

seq1  TGAAGGAGTCAAAGGAGGAAGCTGAGGGTCACTTCTATGTTTGAATATGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGAGTCAAAGGAGGAAGCTGAGGGTCACTTCTATGTTTGAATATGT  942

seq1  A-ATAATTCCTCAGGCTTGTGGTCTGAATTC  979
      | |||||||||||||||||||||||||||||
seq2  AGATAATTCCTCAGGCTTGTGGTCTGAATTC  973

seq1: chr3_17541214_17541746
seq2: B6Ng01-023N19.g_69_601

seq1  GAATTCCATATTGTTTGTGAAATAGAAATTGTATTATTGGCCCTGGCGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATATTGTTTGTGAAATAGAAATTGTATTATTGGCCCTGGCGTT  50

seq1  CCCCTGTACTGGGGCATATAAAGTTTGCATGTCCAATGGGCCTCTCTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGTACTGGGGCATATAAAGTTTGCATGTCCAATGGGCCTCTCTTTC  100

seq1  CAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAA  150

seq1  GAGCTCCGGGGTACTGGTTAGTTCATAATGTTCCACCTATAGGGTTGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCCGGGGTACTGGTTAGTTCATAATGTTCCACCTATAGGGTTGCAG  200

seq1  ATCCCTTTAGCTCCTTGGCTACTTTCTCTAGCTCCTCCATTGGGAGCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTTTAGCTCCTTGGCTACTTTCTCTAGCTCCTCCATTGGGAGCCCT  250

seq1  GTGATCCATCCATTAGCTGACTATGAGCATCCACTTCTGTGTTTGCTAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCCATCCATTAGCTGACTATGAGCATCCACTTCTGTGTTTGCTAGG  300

seq1  TCCCGGCATAGTCTCACAAGAGACAGCTACATCTGGGTCCTTTCGATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGGCATAGTCTCACAAGAGACAGCTACATCTGGGTCCTTTCGATAAA  350

seq1  AACTTGCTAGTGTATGCAATAGTGTCAGCGTTTGGATGCTGATTATGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGCTAGTGTATGCAATAGTGTCAGCGTTTGGATGCTGATTATGGGG  400

seq1  TGGATCCCTGGATTTGGCAGTCTCTACATGGACCATCCTTTCATCTCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCCCTGGATTTGGCAGTCTCTACATGGACCATCCTTTCATCTCAGC  450

seq1  TCCAAACTTTGTCTCTGTAACTCCTTCCAAGGGTGTTTTGTTCCCTCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAACTTTGTCTCTGTAACTCCTTCCAAGGGTGTTTTGTTCCCTCTTC  500

seq1  TAAGGAGGGGCATAGTGTCCACACTTCAGTCTT  533
      |||||||||||||||||||||||||||||||||
seq2  TAAGGAGGGGCATAGTGTCCACACTTCAGTCTT  533