BAC Information

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BAC

Clone NameB6Ng01-024A13
Chromosome3 (Build37)
Map Location 38,827,772 - 38,895,732
singlet/doubletdoublet
Overlap geneFat4
Upstream geneLOC665811, EG665821, LOC100041366, LOC100040785, LOC665838, Ankrd50, LOC100041378, LOC665855, LOC100040824
Downstream geneLOC100041432, LOC100040853, LOC100041443, LOC100041458
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024A13.bB6Ng01-024A13.g
ACCDH855787DH855788
length1,1431,065
definitionDH855787|Mus musculus domesticus DNA, BAC clone: B6Ng01-024A13, 5' end.DH855788|Mus musculus domesticus DNA, BAC clone: B6Ng01-024A13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,894,581 - 38,895,732)(38,827,772 - 38,828,843)
sequence
gaattctttaaatatttgtcatggaaaccccctcataacactacattttc
taacaaaatatattccttcttttcctgtcagcaggagcgtagattgagac
atctctggtctggctgtgggatgatgaaagcctagagattaatgactttg
ccaatttcctacaattttgttgtaaaatgtataatgtaagagattcaaaa
tcaaatagtagctttttttttctgcatattttctgaagtaaagacatctt
cccactgtggccaatttagtaatagcagaaatattttcttcacatttagc
attactcaatacttgaccatggcccatctctggctgcagccatggacaga
aggacacagcagatgaccatggctgtgcctcacaatgaggtagacggctg
agaaagaatcgttcaatatgatatatccttcatttttcctgaaacttcac
tatagataacaagagccaaagaaaaatatcactctggggccacacaacaa
actcgcatattatcctgtaatgtggaactgtatacatgattcccagaagg
aatggctgaagggctgcagtgcagagaagagatgctgagggaggagagat
gtctcaccatgcctgctcgccgtgcaatcactgtgtggaactgtccatcc
gacaccttcttcatggtggtcagtttgtacgtcccactgcccagattgta
tgagaatctgagtcttttcttcggcaatctccagagccaggaactctgcc
ctctctcccgtctggttgtcatagttataaagcaataaagcatggctttt
gatggtggcaaacttgacataaatatagttgttgttggggtccaggctgg
gaaactccatgtatgacagttcctcaaatccataactgttcagctcacag
tgcttgccaagacgcctgcatgggatgagaaaggacattgagcccagcag
tgttttcttagttattcgtaacaaatattttcagttttatatgatcgtgg
ccgttaatatgtcattatcatcatccttcctcagttgcttatccgaagtt
ggcattcttgttacagatgaaactcatggtcatcattgggcagctggtcc
tggctacagcatccgcaagaaaaccagaaaagtatggagagaa
gaattcttaggagaatttctggaaactatagtttttaaggtaatcatatc
ctccatgctttcctggccccagatattactggagtggttttaaagtctca
tttatttgtgtcttgttcatcctttagactgaggtggtcagatttcattt
tggcaagatgacagagggaaatattgtgcttggcactgttcggccttcaa
tttctttgcaaatgtctgcgccaaggaagaggtattttgtgcagctttag
ctagatatttttttctctctctttttttaatgtttgatgagtatgtctct
ttgtgttagacaaacctagaccacacgttgcttttccactaaacttgagc
acatatcagacacttggtacacattggtgcaccacttggtattgtggtgg
ggaggcacaagagagatgagattttaggttaaccagcagtgtctaatcgc
aacttaactgtcaaatcttttctttgggttgcacctgtgtctcatgtgcc
ctggactggcctcaaagttgctgtgtagctcaggatgatctgaaaccttc
tggcctccaatacccagctggggttgctgggaagggtcactacagtgttt
actgtttagaattgtttgaagacagttgtctaagtgtgatggaacaactt
cagccagccatgaccaagagtgaacaaaaactcccaacttttctgcagcc
attttcatgtcaatctcattcattcattccttccttccttcattcattca
ttcgttcattcattgattcgttgatttactcttcaacatacatggtagat
agttgcatgatactttctaaaatttttgataaatacatacaacctacact
tcctattttaaccaattttaaatgtattgtttagtggcattcaggacctt
ccgtagctgtcattattatgcactgtctgtgtgattttggcttctgacac
caaggcctacactcactggacagtcaccccctctgatgagctgtggtttc
agaagtggactatttgtgacagcacaaggagcactgtgttatagtgcctt
agtcctggccatgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_38894581_38895732
seq2: B6Ng01-024A13.b_40_1182 (reverse)

seq1  TTCTCTCTCATACTTTTCTGTGTCTTCTTTGGCGATGCTGTAGGCAGGAC  50
      ||||||| |||||||||||| || ||| |||  |||||||||| ||||||
seq2  TTCTCTC-CATACTTTTCTG-GTTTTC-TTGCGGATGCTGTAGCCAGGAC  47

seq1  CAGCTTGCCAATGATGACCATGGAGTTTCATCTGGTTACAAGAATGGCAA  100
      |||||  |||||||||||||| ||||||||||| || ||||||||| |||
seq2  CAGCTGCCCAATGATGACCAT-GAGTTTCATCT-GTAACAAGAATGCCAA  95

seq1  CTTCGGAT-AGCACTTGAGGAAGGATGATGATAATGACATATTTAACGG-  148
      |||||||| ||||  |||||||||||||||||||||||||| ||||||| 
seq2  CTTCGGATAAGCAACTGAGGAAGGATGATGATAATGACATA-TTAACGGC  144

seq1  CACGATTCATTATTATAACTGAAAATATTTTGTTACGAATAACTTAAGAA  198
      ||||| ||||   || ||||||||||| ||||||||||||||| ||||||
seq2  CACGA-TCAT--ATAAAACTGAAAATA-TTTGTTACGAATAAC-TAAGAA  189

seq1  AACACTGCTGGGCTTCAATGTCCTTTCTCTTCCC-TGCAGGCGTCTTTGG  247
      ||||||||||||| ||||||||||||||| |||| |||||||||| ||||
seq2  AACACTGCTGGGC-TCAATGTCCTTTCTCATCCCATGCAGGCGTC-TTGG  237

seq1  CAAGCACTGTGAGCTGAACAGTTATGGATTTGAGGAACTGTCATACATGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCACTGTGAGCTGAACAGTTATGGATTTGAGGAACTGTCATACATGG  287

seq1  AGTTTCCCAGCCTGGACCCCAACAACAACTATATTTATGTCAAGTTTGCC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCCCAGCCTGGACCCCAACAACAACTATATTTATGTCAAGTTTGCC  337

seq1  ACCATCAAAAGCCATGCTTTATTGCTTTATAACTATGACAACCAGACGGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCAAAAGCCATGCTTTATTGCTTTATAACTATGACAACCAGACGGG  387

seq1  AGAGAGGGCAGAGTTCCTGGCTCTGGAGATTGCCGAAG-AAAGACTCAGA  446
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGAGAGGGCAGAGTTCCTGGCTCTGGAGATTGCCGAAGAAAAGACTCAGA  437

seq1  TTCTCATACAATCTGGGCAGTGGGACGTACAAACTGACCACCATGAAGAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATACAATCTGGGCAGTGGGACGTACAAACTGACCACCATGAAGAA  487

seq1  GGTGTCGGATGGACAGTTCCACACAGTGATTGCACGGCGAGCAGGCATGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCGGATGGACAGTTCCACACAGTGATTGCACGGCGAGCAGGCATGG  537

seq1  TGAGACATCTCTCCTCCCTCAGCATCTCTTCTCTGCACTGCAGCCCTTCA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACATCTCTCCTCCCTCAGCATCTCTTCTCTGCACTGCAGCCCTTCA  587

seq1  GCCATTCCTTCTGGGAATCATGTATACAGTTCCACATTACAGGATAATAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTCCTTCTGGGAATCATGTATACAGTTCCACATTACAGGATAATAT  637

seq1  GCGAGTTTGTTGTGTGGCCCCAGAGTGATATTTTTCTTTGGCTCTTGTTA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGTTTGTTGTGTGGCCCCAGAGTGATATTTTTCTTTGGCTCTTGTTA  687

seq1  TCTATAGTGAAGTTTCAGGAAAAATGAAGGATATATCATATTGAACGATT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAGTGAAGTTTCAGGAAAAATGAAGGATATATCATATTGAACGATT  737

seq1  CTTTCTCAGCCGTCTACCTCATTGTGAGGCACAGCCATGGTCATCTGCTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCAGCCGTCTACCTCATTGTGAGGCACAGCCATGGTCATCTGCTG  787

seq1  TGTCCTTCTGTCCATGGCTGCAGCCAGAGATGGGCCATGGTCAAGTATTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTCTGTCCATGGCTGCAGCCAGAGATGGGCCATGGTCAAGTATTG  837

seq1  AGTAATGCTAAATGTGAAGAAAATATTTCTGCTATTACTAAATTGGCCAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATGCTAAATGTGAAGAAAATATTTCTGCTATTACTAAATTGGCCAC  887

seq1  AGTGGGAAGATGTCTTTACTTCAGAAAATATGCAGAAAAAAAAAGCTACT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGAAGATGTCTTTACTTCAGAAAATATGCAGAAAAAAAAAGCTACT  937

seq1  ATTTGATTTTGAATCTCTTACATTATACATTTTACAACAAAATTGTAGGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATTTTGAATCTCTTACATTATACATTTTACAACAAAATTGTAGGA  987

seq1  AATTGGCAAAGTCATTAATCTCTAGGCTTTCATCATCCCACAGCCAGACC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGCAAAGTCATTAATCTCTAGGCTTTCATCATCCCACAGCCAGACC  1037

seq1  AGAGATGTCTCAATCTACGCTCCTGCTGACAGGAAAAGAAGGAATATATT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGTCTCAATCTACGCTCCTGCTGACAGGAAAAGAAGGAATATATT  1087

seq1  TTGTTAGAAAATGTAGTGTTATGAGGTGGTTTCCATGACAAATATTTAAA  1146
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTGTTAGAAAATGTAGTGTTATGAGGGGGTTTCCATGACAAATATTTAAA  1137

seq1  GAATTC  1152
      ||||||
seq2  GAATTC  1143

seq1: chr3_38827772_38828843
seq2: B6Ng01-024A13.g_69_1133

seq1  GAATTCTTAGGAGAATTTCTGGAAACTATAGTTTTTAAGGTAATCATATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGGAGAATTTCTGGAAACTATAGTTTTTAAGGTAATCATATC  50

seq1  CTCCATGCTTTCCTGGCCCCAGATATTACTGGAGTGGTTTTAAAGTCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATGCTTTCCTGGCCCCAGATATTACTGGAGTGGTTTTAAAGTCTCA  100

seq1  TTTATTTGTGTCTTGTTCATCCTTTAGACTGAGGTGGTCAGATTTCATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTGTGTCTTGTTCATCCTTTAGACTGAGGTGGTCAGATTTCATTT  150

seq1  TGGCAAGATGACAGAGGGAAATATTGTGCTTGGCACTGTTCGGCCTTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAGATGACAGAGGGAAATATTGTGCTTGGCACTGTTCGGCCTTCAA  200

seq1  TTTCTTTGCAAATGTCTGCGCCAAGGAAGAGGTATTTTGTGCAGCTTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGCAAATGTCTGCGCCAAGGAAGAGGTATTTTGTGCAGCTTTAG  250

seq1  CTAGATATTTTTTTCTCTCTCTTTTTTTAATGTTTGATGAGTATGTCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATATTTTTTTCTCTCTCTTTTTTTAATGTTTGATGAGTATGTCTCT  300

seq1  TTGTGTTAGACAAACCTAGACCACACGTTGCTTTTCCACTAAACTTGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTAGACAAACCTAGACCACACGTTGCTTTTCCACTAAACTTGAGC  350

seq1  ACATATCAGACACTTGGTACACATTGGTGCACCACTTGGTATTGTGGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATCAGACACTTGGTACACATTGGTGCACCACTTGGTATTGTGGTGG  400

seq1  GGAGGCACAAGAGAGATGAGATTTTAGGTTAACCAGCAGTGTCTAATCGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCACAAGAGAGATGAGATTTTAGGTTAACCAGCAGTGTCTAATCGC  450

seq1  AACTTAACTGTCAAATCTTTTCTTTGGGTTGCACCTGTGTCTCATGTGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAACTGTCAAATCTTTTCTTTGGGTTGCACCTGTGTCTCATGTGCC  500

seq1  CTGGACTGGCCTCAAAGTTGCTGTGTAGCTCAGGATGATCTGAAACCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACTGGCCTCAAAGTTGCTGTGTAGCTCAGGATGATCTGAAACCTTC  550

seq1  TGGCCTCCAATACCCAGCTGGGGTTGCTGGGAAGGGTCACTACAGTGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTCCAATACCCAGCTGGGGTTGCTGGGAAGGGTCACTACAGTGTTT  600

seq1  ACTGTTTAGAATTGTTTGAAGACAGTTGTCTAAGTGTGATGGAACAACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTAGAATTGTTTGAAGACAGTTGTCTAAGTGTGATGGAACAACTT  650

seq1  CAGCCAGCCATGACCAAGAGTGAACAAAAACTCCCAACTTTTCTGCAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGCCATGACCAAGAGTGAACAAAAACTCCCAACTTTTCTGCAGCC  700

seq1  ATTTTCATGTCAATCTCATTCATTCATTCCTTCCTTCCTTCATTCATTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCATGTCAATCTCATTCATTCATTCCTTCCTTCCTTCATTCATTCA  750

seq1  TTCGTTCATTCATTGATTCGTTGATTTACTCTTCAACATACATGGTAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTTCATTCATTGATTCGTTGATTTACTCTTCAACATACATGGTAGAT  800

seq1  AGTTGCATGATACTTTCTAAAATTTTTGATAAAATACATACAACCTACAC  850
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGTTGCATGATACTTTCTAAAATTTTTGAT-AAATACATACAACCTACAC  849

seq1  TTCCTATTTTAACCAATTTTAAATGTATTGTTTAGTGGCATTCAGGACCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTATTTTAACCAATTTTAAATGTATTGTTTAGTGGCATTCAGGACCT  899

seq1  TCCGTAGCTGTCATTATTATGCACTGTCTGTGTGATTTTGGCTTCTGACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTAGCTGTCATTATTATGCACTGTCTGTGTGATTTTGGCTTCTGACA  949

seq1  CCAAGGCCTTACACTCACTGGACAGTCACCCCCTCTGATGAGCTGTGTTT  1000
      |||||||| |||||||||||||||||||||||||||||||||||||| ||
seq2  CCAAGGCC-TACACTCACTGGACAGTCACCCCCTCTGATGAGCTGTGGTT  998

seq1  CCAGAGTTGGACTATTCTGGTGACAGGCACAAGGAGCACTGTGTTATAGG  1050
       ||||  ||||||||  | |||||| ||||||||||||||||||||||| 
seq2  TCAGAAGTGGACTAT--TTGTGACA-GCACAAGGAGCACTGTGTTATAGT  1045

seq1  TGCTTAGTCCCTGGGCCATGCC  1072
        ||||||||   |||||||||
seq2  GCCTTAGTCC--TGGCCATGCC  1065