BAC Information

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BAC

Clone NameB6Ng01-024I08
Chromosome3 (Build37)19 (Build37)
Map Location 88,380,106 - 88,381,13949,102,374 - 49,102,621
singlet/doubletsingletsinglet
Overlap geneLOC545536
Upstream geneArhgef11, EG625281, 3110045G13Rik, Ntrk1, Insrr, Sh2d2a, Prcc, Hdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes, Bcan, Hapln2, Gpatc4, Apoa1bp, Ttc24, Iqgap3, Mef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4
Downstream geneSsr2, Arhgef2, Rxfp4, 2810403A07Rik, Rit1, Syt11, 5830417I10Rik, Msto1, Dap3, Ash1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024I08.bB6Ng01-024I08.g
ACCDH856129DH856130
length1,023447
definitionDH856129|Mus musculus domesticus DNA, BAC clone: B6Ng01-024I08, 5' end.DH856130|Mus musculus domesticus DNA, BAC clone: B6Ng01-024I08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(88,380,106 - 88,381,139)(49,102,374 - 49,102,621)
sequence
gaattccacctgctgcctcaccttgcttctcctgtcccagcggtggcccg
ggcggccagcgcgagcagcggggaccatgttccgacgcaagctcacggcc
ctggattaccacaacccctcaggcttcaaatgcaaagatgaaacagaatt
tagaaactttaacgtttggcttgaagaccagaaaatcagacactacaaga
ttgaagacagaggtaacttgagaaacatccacagcagtgactggcccaag
ttctttgaaaagtatctcaaagatgttaactgtcctttcaagattcagga
tcagcaagaagcaattgactggcttcttggtttagctgttagacttgaat
atggagataacgctgaaaaatacaaggacttagtacctgataacaggaaa
aatactgacaatgcagctaaaaatgcagagccactgatcaacttggatgt
aaataatcctgattttaaggcgggtgtcatggctctggctaacctccttc
agattcagcatcatgatgactacttggtaatgcttaaggcaattcgcatt
ttggttcaggaacgtctaacacaggatgcagttgctaaagcaaatcaaac
aaaagagggcttacctgttgctttagggaaacatattcttggctttgaca
caggcgatgcagttcttaatgaagctgctcagatcctgcggttgctgcac
atagaagagctcagagagctacagacaaaaattaatgaagccatagtagc
cgtccaggccatcattgctgatccaaagacagaccacagactggggaaag
ttgggagatgagcacatgaggatgtcagcttctcacctgcctagtgatgg
gaaccattacaccagcatgtgcttggaaatcagatgtcacacttggaaag
ggagaaccccaggagatgaccatgttctagagatttaccaccgctgtttt
tcttaataaagtggggaagtaaaggctaaaaaaaaaaaaaaaaagattca
ctgcttctgctcccaagcgctgg
actctatagaccaggctggacacaaactcagaaatccgcctggctctgac
tcccgtctgctgggattaaaggtgtatgccaacaccccccagagaatcct
gtgcgggtcttctggaagatcatcatgttccctttcttaattgctgagcc
agctctccagcttctgcttgtctgtatgttagcttgcttgcctgttaagt
tatgtctgggagcatgtggctgggaagaagagccagggcctatcctttaa
catgcgtgtgtccagcatgcagagtcagacaaaaggaatgttgtagtaag
aatgcaaactgtttgagtggccttcattttttactctcttgtcttaaaga
tgacccactctacatctttctgtatttgctatgtatttcactagattccc
ctctcattctagtccggatcagttcggtaagctcaaacaagatctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_88380106_88381139
seq2: B6Ng01-024I08.b_38_1060 (reverse)

seq1  CCAGCGCTTGGGAGGCAGAAGCAGGTGGAATTCTTTTTTTTTTTTTTTTT  50
      ||||||||||||| ||||||||||   |||    | ||||||||||||||
seq2  CCAGCGCTTGGGA-GCAGAAGCAG--TGAA----TCTTTTTTTTTTTTTT  43

seq1  TTTAGCCTTTTACTTCCCCAACTTTATTAAAGAAAAAGCAGCGGTGGTAA  100
      ||||||| ||||||||||| |||||||| |||||||| ||||||||||||
seq2  TTTAGCC-TTTACTTCCCC-ACTTTATT-AAGAAAAA-CAGCGGTGGTAA  89

seq1  ATCTCTAGAACATGGTCAATCTCCTGGGGTTCTCCC-TTCCAAGTGTGAC  149
      ||||||||||||||||| |||||||||||||||||| |||||||||||||
seq2  ATCTCTAGAACATGGTC-ATCTCCTGGGGTTCTCCCTTTCCAAGTGTGAC  138

seq1  ATCTGATTTCCAAGCACATGCTGGTGTAATGGTTCCCATCACTAGGCAGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGATTTCCAAGCACATGCTGGTGTAATGGTTCCCATCACTAGGCAGG  188

seq1  TGAGAAGCTGACATCCTCATGTGCTCATCTCCCAACTTTCCCCAGTCTGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGCTGACATCCTCATGTGCTCATCTCCCAACTTTCCCCAGTCTGT  238

seq1  GGTCTGTCTTTGGATCAGCAATGATGGCCTGGACGGCTACTATGGCTTCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGTCTTTGGATCAGCAATGATGGCCTGGACGGCTACTATGGCTTCA  288

seq1  TTAATTTTTGTCTGTAGCTCTCTGAGCTCTTCTATGTGCAGCAACCGCAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTTGTCTGTAGCTCTCTGAGCTCTTCTATGTGCAGCAACCGCAG  338

seq1  GATCTGAGCAGCTTCATTAAGAACTGCATCGCCTGTGTCAAAGCCAAGAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGAGCAGCTTCATTAAGAACTGCATCGCCTGTGTCAAAGCCAAGAA  388

seq1  TATGTTTCCCTAAAGCAACAGGTAAGCCCTCTTTTGTTTGATTTGCTTTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTCCCTAAAGCAACAGGTAAGCCCTCTTTTGTTTGATTTGCTTTA  438

seq1  GCAACTGCATCCTGTGTTAGACGTTCCTGAACCAAAATGCGAATTGCCTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTGCATCCTGTGTTAGACGTTCCTGAACCAAAATGCGAATTGCCTT  488

seq1  AAGCATTACCAAGTAGTCATCATGATGCTGAATCTGAAGGAGGTTAGCCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTACCAAGTAGTCATCATGATGCTGAATCTGAAGGAGGTTAGCCA  538

seq1  GAGCCATGACACCCGCCTTAAAATCAGGATTATTTACATCCAAGTTGATC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCATGACACCCGCCTTAAAATCAGGATTATTTACATCCAAGTTGATC  588

seq1  AGTGGCTCTGCATTTTTAGCTGCATTGTCAGTATTTTTCCTGTTATCAGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCTCTGCATTTTTAGCTGCATTGTCAGTATTTTTCCTGTTATCAGG  638

seq1  TACTAAGTCCTTGTATTTTTCAGCGTTATCTCCATATTCAAGTCTAACAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAGTCCTTGTATTTTTCAGCGTTATCTCCATATTCAAGTCTAACAG  688

seq1  CTAAACCAAGAAGCCAGTCAATTGCTTCTTGCTGATCCTGAATCTTGAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACCAAGAAGCCAGTCAATTGCTTCTTGCTGATCCTGAATCTTGAAA  738

seq1  GGACAGTTAACATCTTTGAGATACTTTTCAAAGAACTTGGGCCAGTCACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGTTAACATCTTTGAGATACTTTTCAAAGAACTTGGGCCAGTCACT  788

seq1  GCTGTGGATGTTTCTCAAGTTACCTCTGTCTTCAATCTTGTAGTGTCTGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGGATGTTTCTCAAGTTACCTCTGTCTTCAATCTTGTAGTGTCTGA  838

seq1  TTTTCTGGTCTTCAAGCCAAACGTTAAAGTTTCTAAATTCTGTTTCATCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGGTCTTCAAGCCAAACGTTAAAGTTTCTAAATTCTGTTTCATCT  888

seq1  TTGCATTTGAAGCCTGAGGGGTTGTGGTAATCCAGGGCCGTGAGCTTGCG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTTGAAGCCTGAGGGGTTGTGGTAATCCAGGGCCGTGAGCTTGCG  938

seq1  TCGGAACATGGTCCCCGCTGCTCGCGCTGGCCGCCCGGGCCACCGCTGGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGAACATGGTCCCCGCTGCTCGCGCTGGCCGCCCGGGCCACCGCTGGG  988

seq1  ACAGGAGAAGCAAGGTGAGGCAGCAGGTGGAATTC  1034
      |||||||||||||||||||||||||||||||||||
seq2  ACAGGAGAAGCAAGGTGAGGCAGCAGGTGGAATTC  1023

seq1: chr19_49102374_49102621
seq2: B6Ng01-024I08.g_272_519 (reverse)

seq1  AGAGAACTTGTTTGAGCTTACCGAACTGATCCAGACTAGAATGAGAGGGG  50
      ||||| |||||||||||||||||||||||||| |||||||||||||||||
seq2  AGAGATCTTGTTTGAGCTTACCGAACTGATCCGGACTAGAATGAGAGGGG  50

seq1  AATCTAGTGTAATATATAGCAAATACAGAAAGATGTAGAGTGGGTCAACT  100
      ||||||||| |||| |||||||||||||||||||||||||||||||| ||
seq2  AATCTAGTGAAATACATAGCAAATACAGAAAGATGTAGAGTGGGTCATCT  100

seq1  TTAAGACAAGAGAGTACAAAATGAAGGCCACTCAAACAGTTTGCATTCTT  150
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTAAGACAAGAGAGTAAAAAATGAAGGCCACTCAAACAGTTTGCATTCTT  150

seq1  ACTACAACATTCCTTCTGTCTGTCTCTGCAACTTGTGACACATGCATGTT  200
      ||||||||||||||| |||||| |||||||   || |||||| |||||||
seq2  ACTACAACATTCCTTTTGTCTGACTCTGCATGCTG-GACACACGCATGTT  199

seq1  AAAGGA-AGGCCCTGGCTCTTCCTCCCAGCCCCATGCTCCCAGAAATAA  248
      |||||| ||||||||||||||| |||||||| |||||||||||| ||||
seq2  AAAGGATAGGCCCTGGCTCTTCTTCCCAGCCACATGCTCCCAGACATAA  248