BAC Information

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BAC

Clone NameB6Ng01-024N21
Chromosome3 (Build37)
Map Location 53,798,399 - 53,968,334
singlet/doubletdoublet
Overlap geneEG666444, LOC100039937, Trpc4
Upstream geneCog6, Lhfp, LOC100039808, LOC666413, 8030451K01Rik, 2810046L04Rik, Stoml3, Frem2, Ppia-ps3_416.1, LOC621155, Ufm1
Downstream genePostn, LOC100039951, LOC434807, B020017C02Rik, D3Ertd300e, Exosc8, Alg5, Smad9, Rfxap, LOC545524, 6030405A18Rik, Ccna1, 4931419H13Rik, Spg20, A730037C10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024N21.bB6Ng01-024N21.g
ACCDH856376DH856377
length1,1041,019
definitionDH856376|Mus musculus domesticus DNA, BAC clone: B6Ng01-024N21, 5' end.DH856377|Mus musculus domesticus DNA, BAC clone: B6Ng01-024N21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,967,219 - 53,968,334)(53,798,399 - 53,799,416)
sequence
gaattccaggactaactagaaaaacccctcccatctatagatagaggaca
cagagaatgtacaacagacattatccatctatgttatagatgagctataa
gtacatgcagccctgaggacagccactgtctcggattcaatcctatactt
atttcactatgatgaaaatgatccaattaaattctacaagtcccaagagc
acttaaaaagaagaatgcaatctgtgttatgaatagaagaactcatttat
cactttcaatatttgactcatagtcctatcgcatccataaggtgggagaa
tcttagcttgcctcaagatctgtataagaaactaactcacccactggaaa
aggttgctttaagaaaactgaaatgaatcctgccttggatccgtatattt
ctatgttacccaacattggatcatttcaaatactatatttgtttaggttt
ttctcaatgagttacatgttttctttgcagatatttattattttatgaga
gactgttaatttgagataggtcttttgtattttgtgaataatcatgacca
ttacgttgaaagggagcaacttctggcacatgattatacaaaattttcaa
ctacagcaaatggaaaaccaggaagaaaaaagtacttaagcattttatcc
agctcgttttttaagttctggtttcgtgattcactgcaaagtagagccaa
atacaaggcattccttactttccaggttgaagctattgctgtttgcacag
gatggaaagatatttattataagtgctgttataatgaaatactttttcat
taaactgtcttttattcatcaaaggagaaaatcatttgctggctctcttt
gttccaggaacatgctggagtgctaggtgaaaacgcagctcggctctccg
agacactgaaaccaaacactaagctgtgagttaaaatgaaccagatagac
aaataagcccttcccctctgccagcatttctctttaccccgcacatacag
agagggctaactgcaaaccttctttccttaatttagaaggccattggagc
cttctgcaggtggcaccctggattgctctggtgagtcacggaaagaaatt
tctg
gaattctcaggtttactggaatctattggactctaaataaataatcagac
cactatcagtacagatgaacttgtctggagaaagaacagtttgttgctca
aaagacaaggtcagccaggaagattgccttagggctccctgctgaggctc
attacagtgaggtgcccaggagaagctgaaccagttgtcttttaataatg
tgttgtagtaaaagatacacatctcattttgatacgaaattaattattct
aacagagctctcagtctggttacagcctatcaagaacctgcacaaattcc
aattaggaactaaatgcttgcccatgtctatttgggatgggaccagtttg
ttagagacgttacagctaggttgctttactagagtcataatttaataact
ttgttcattaactgactctgaagggcagagctcagatgtaaaagcggggt
ctgtcacaaaaatctcgtaatatttatgtttgaaggaagtgagctaagag
ggccatttctgcagggtttttagtgcatttaacattcattttccagattt
atctaacccccctggaggctagttaggagtcactaacacatatgtgtccc
gttatagctctgggagcatcctttgggaagattaggctcagtcaccacag
ttttcagaaattgttttcaacttgccaaaatccattatggaagaattgtt
tctttccaaatgggctgtcaatctcatttcttcccatgtccatcaaacac
tgagaatattcgattcaggattgtcccacatgaatttgcatcacgggaaa
agttgttcttgcaatctcaagaggcccccactttgtatttttgtctctga
aggattcgggtcattaagaagcaagagcaaattgcagctgtctttagtag
ctccctctaccatctcactgagcaataaagttcacagcaacgtagggtag
gggaagtgaaaacggaaggattttctttacatcataatactgaggccatt
agctacaagtactacactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_53967219_53968334
seq2: B6Ng01-024N21.b_47_1150 (reverse)

seq1  CAGAAATTTTCTTTTCTGTGACTCATACAGAGCAAT-CAGAGTGCCCACC  49
      |||||||||   |||| ||||||||  ||||||||| ||| ||| |||||
seq2  CAGAAATTT--CTTTCCGTGACTCA-CCAGAGCAATCCAGGGTG-CCACC  46

seq1  TGCAAAGAAGGCTCCAATGGCCTCTAAAATTAAGGAAAAGAAAGGTTTGC  99
      |||  ||||||||||||||||||   ||||||||||||   |||||||||
seq2  TGC--AGAAGGCTCCAATGGCCTTCTAAATTAAGGAAA--GAAGGTTTGC  92

seq1  AGTTAGCCCTCTCTGTATGTGCGGTGTAAAAGAGAAATGCTGGCAGAGGG  149
      |||||||||||||||||||||||| || ||||||||||||||||||||||
seq2  AGTTAGCCCTCTCTGTATGTGCGGGGT-AAAGAGAAATGCTGGCAGAGGG  141

seq1  GAAGGGCTTATTTGTCTATCTGGTTCATTTTAACCTCACAGCTTAGTGTT  199
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GAAGGGCTTATTTGTCTATCTGGTTCATTTTAA-CTCACAGCTTAGTGTT  190

seq1  TTGGTTTTCAGTGTTCTCGGAGAGCCGAGCTGCGTTTTCACCTAGCACTC  249
      |  | |||||||| ||||||||||||||||||||||||||||||||||||
seq2  T--GGTTTCAGTG-TCTCGGAGAGCCGAGCTGCGTTTTCACCTAGCACTC  237

seq1  CAGCATGTTCCTGGAACAAAGAGAGCCAGCAAATGATTTTCTCCTTTGAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATGTTCCTGGAACAAAGAGAGCCAGCAAATGATTTTCTCCTTTGAT  287

seq1  GAATAAAAGACAGTTTAATGAAAAAGTATTTCATTATAACAGCACTTATA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAAGACAGTTTAATGAAAAAGTATTTCATTATAACAGCACTTATA  337

seq1  ATAAATATCTTTCCATCCTGTGCAAACAGCAATAGCTTCAACCTGGAAAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATATCTTTCCATCCTGTGCAAACAGCAATAGCTTCAACCTGGAAAG  387

seq1  TAAGGAATGCCTTGTATTTGGCTCTACTTTGCAGTGAATCACGAAACCAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAATGCCTTGTATTTGGCTCTACTTTGCAGTGAATCACGAAACCAG  437

seq1  AACTTAAAAAACGAGCTGGATAAAATGCTTAAGTACTTTTTTCTTCCTGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAAAAAACGAGCTGGATAAAATGCTTAAGTACTTTTTTCTTCCTGG  487

seq1  TTTTCCATTTGCTGTAGTTGAAAATTTTGTATAATCATGTGCCAGAAGTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCATTTGCTGTAGTTGAAAATTTTGTATAATCATGTGCCAGAAGTT  537

seq1  GCTCCCTTTCAACGTAATGGTCATGATTATTCACAAAATACAAAAGACCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCTTTCAACGTAATGGTCATGATTATTCACAAAATACAAAAGACCT  587

seq1  ATCTCAAATTAACAGTCTCTCATAAAATAATAAATATCTGCAAAGAAAAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAAATTAACAGTCTCTCATAAAATAATAAATATCTGCAAAGAAAAC  637

seq1  ATGTAACTCATTGAGAAAAACCTAAACAAATATAGTATTTGAAATGATCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAACTCATTGAGAAAAACCTAAACAAATATAGTATTTGAAATGATCC  687

seq1  AATGTTGGGTAACATAGAAATATACGGATCCAAGGCAGGATTCATTTCAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTGGGTAACATAGAAATATACGGATCCAAGGCAGGATTCATTTCAG  737

seq1  TTTTCTTAAAGCAACCTTTTCCAGTGGGTGAGTTAGTTTCTTATACAGAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTAAAGCAACCTTTTCCAGTGGGTGAGTTAGTTTCTTATACAGAT  787

seq1  CTTGAGGCAAGCTAAGATTCTCCCACCTTATGGATGCGATAGGACTATGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGGCAAGCTAAGATTCTCCCACCTTATGGATGCGATAGGACTATGA  837

seq1  GTCAAATATTGAAAGTGATAAATGAGTTCTTCTATTCATAACACAGATTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAATATTGAAAGTGATAAATGAGTTCTTCTATTCATAACACAGATTG  887

seq1  CATTCTTCTTTTTAAGTGCTCTTGGGACTTGTAGAATTTAATTGGATCAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTCTTTTTAAGTGCTCTTGGGACTTGTAGAATTTAATTGGATCAT  937

seq1  TTTCATCATAGTGAAATAAGTATAGGATTGAATCCGAGACAGTGGCTGTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCATAGTGAAATAAGTATAGGATTGAATCCGAGACAGTGGCTGTC  987

seq1  CTCAGGGCTGCATGTACTTATAGCTCATCTATAACATAGATGGATAATGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGCTGCATGTACTTATAGCTCATCTATAACATAGATGGATAATGT  1037

seq1  CTGTTGTACATTCTCTGTGTCCTCTATCTATAGATGGGAGGGGTTTTTCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGTACATTCTCTGTGTCCTCTATCTATAGATGGGAGGGGTTTTTCT  1087

seq1  AGTTAGTCCTGGAATTC  1116
      |||||||||||||||||
seq2  AGTTAGTCCTGGAATTC  1104

seq1: chr3_53798399_53799416
seq2: B6Ng01-024N21.g_69_1087

seq1  GAATTCTCAGGTTTACTGGAATCTATTGGACTCTAAATAAATAATCAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGGTTTACTGGAATCTATTGGACTCTAAATAAATAATCAGAC  50

seq1  CACTATCAGTACAGATGAACTTGTCTGGAGAAAGAACAGTTTGTTGCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATCAGTACAGATGAACTTGTCTGGAGAAAGAACAGTTTGTTGCTCA  100

seq1  AAAGACAAGGTCAGCCAGGAAGATTGCCTTAGGGCTCCCTGCTGAGGCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAAGGTCAGCCAGGAAGATTGCCTTAGGGCTCCCTGCTGAGGCTC  150

seq1  ATTACAGTGAGGTGCCCAGGAGAAGCTGAACCAGTTGTCTTTTAATAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGTGAGGTGCCCAGGAGAAGCTGAACCAGTTGTCTTTTAATAATG  200

seq1  TGTTGTAGTAAAAGATACACATCTCATTTTGATACGAAATTAATTATTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTAGTAAAAGATACACATCTCATTTTGATACGAAATTAATTATTCT  250

seq1  AACAGAGCTCTCAGTCTGGTTACAGCCTATCAAGAACCTGCACAAATTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGCTCTCAGTCTGGTTACAGCCTATCAAGAACCTGCACAAATTCC  300

seq1  AATTAGGAACTAAATGCTTGCCCATGTCTATTTGGGATGGGACCAGTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGGAACTAAATGCTTGCCCATGTCTATTTGGGATGGGACCAGTTTG  350

seq1  TTAGAGACGTTACAGCTAGGTTGCTTTACTAGAGTCATAATTTAATAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGACGTTACAGCTAGGTTGCTTTACTAGAGTCATAATTTAATAACT  400

seq1  TTGTTCATTAACTGACTCTGAAGGGCAGAGCTCAGATGTAAAAGCGGGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCATTAACTGACTCTGAAGGGCAGAGCTCAGATGTAAAAGCGGGGT  450

seq1  CTGTCACAAAAATCTCGTAATATTTATGTTTGAAGGAAGTGAGCTAAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCACAAAAATCTCGTAATATTTATGTTTGAAGGAAGTGAGCTAAGAG  500

seq1  GGCCATTTCTGCAGGGTTTTTAGTGCATTTAACATTCATTTTCCAGATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATTTCTGCAGGGTTTTTAGTGCATTTAACATTCATTTTCCAGATTT  550

seq1  ATCTAACCCCCCTGGAGGCTAGTTAGGAGTCACTAACACATATGTGTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAACCCCCCTGGAGGCTAGTTAGGAGTCACTAACACATATGTGTCCC  600

seq1  GTTATAGCTCTGGGAGCATCCTTTGGGAAGATTAGGCTCAGTCACCACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAGCTCTGGGAGCATCCTTTGGGAAGATTAGGCTCAGTCACCACAG  650

seq1  TTTTCAGAAATTGTTTTCAACTTGCCAAAATCCATTATGGAAGAATTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGAAATTGTTTTCAACTTGCCAAAATCCATTATGGAAGAATTGTT  700

seq1  TCTTTCCAAATGGGCTGTCAATCTCATTTCTTCCCATGTCCATCAAACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCAAATGGGCTGTCAATCTCATTTCTTCCCATGTCCATCAAACAC  750

seq1  TGAGAATATTCGATTCAGGATTGTCCCACATGAATTTGCATCACGGGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATATTCGATTCAGGATTGTCCCACATGAATTTGCATCACGGGAAA  800

seq1  AGTTGTTCTTGCAATCTCAAGAGGCCCCCAC-TTGTATTTTTGTCTCTGA  849
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGTTGTTCTTGCAATCTCAAGAGGCCCCCACTTTGTATTTTTGTCTCTGA  850

seq1  AGGATTCGGGTCATTAAGAAGCAAGAGCAAA-TGCAGCTGTCTTTAGTAG  898
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGGATTCGGGTCATTAAGAAGCAAGAGCAAATTGCAGCTGTCTTTAGTAG  900

seq1  CTCCCTCTACCATCTCACTGAGCAATAAAGTTCACAGCAAACGTAGGGTA  948
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTCCCTCTACCATCTCACTGAGCAATAAAGTTCACAGC-AACGTAGGGTA  949

seq1  GGGGAAGTGAAAAACGGAAGGATTTTCTTTACATCATAATACTGAGGCCA  998
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAGTG-AAAACGGAAGGATTTTCTTTACATCATAATACTGAGGCCA  998

seq1  -TAGCTACCAGTACTACACTG  1018
       ||||||| ||||||||||||
seq2  TTAGCTACAAGTACTACACTG  1019