BAC Information

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BAC

Clone NameB6Ng01-024O12
Chromosome3 (Build37)
Map Location 92,032,686 - 92,060,617
singlet/doubletdoublet
Overlap geneLOC100043005
Upstream geneLOC100042463, Pglyrp3, EG619750, Lor, A030004J04Rik, Sprr2a, LOC100042999, LOC545543
Downstream geneLOC545545, LOC100042514, LOC619984, Sprr2b, Sprr2c, Sprr2d, Sprr2e, Sprr2f, Sprr2g, Sprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3, LOC100042575, Sprr1a, Sprr4, LOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101, Kprp, Lce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571, Crnn, EG229574
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024O12.bB6Ng01-024O12.g
ACCDH856404DH856405
length1,1671,140
definitionDH856404|Mus musculus domesticus DNA, BAC clone: B6Ng01-024O12, 5' end.DH856405|Mus musculus domesticus DNA, BAC clone: B6Ng01-024O12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,059,447 - 92,060,617)(92,032,686 - 92,033,827)
sequence
gaattcatatggaatgggctccaacagctcaggctcttttctgttggtcc
tcacaaagtgtgcttctataggtggtgcaggctggcacatcaactgtacc
caggtgcccttctctttggcttctctttcttctggtcgttctccttcacc
cacttcaagaagctgtttctgctatttgagagcttgatgtgctcaatccg
cacattgatcctcttggctagaatcttgcccttattaacttgcttgttta
caatgatgcccacggcccaccgagtgacaatgtagactcttctgttttgc
cgtggttacacttatggggcattcctttttgaatagtacccattcccttg
atgtctgcaatatcacccttcctgagttcagttatgtcaaaaagttctct
tcagctcagttctgtctcttttctttgtcgtcagcacttatacatctttc
agaatacatgatcatatagtaaaaggttcatcacaaatttacacataaat
ttaaattataaattgaataagaagtttacaacatttaatgtttacattca
tatccattagaaataattatccggctaaacatttatcacctgtcacagct
caaaaggttcatggagagttaaaaatcataactaagttattagtgaattt
tttatagatatcccactcgatattttatctttttgtcctagcacctataa
tatttttacagcctcttggaatctgagtagtagatgtctgcttactctct
aagatgcaattaaattggtgacacatgggagacaggtagaattttcattg
aagatttatatcagaaaggacctaatagcagtcccactataaaagagctt
aatgaatactgatataatctttaagaattcttatagaatcatcattaaga
attaagaagtcatctaattgtctatatagcatcactacattctttgagat
ctgcagaaatctgctagtgattgtcgaatgttttattggtacagggaaaa
gcatttgagaccaggcttatatgctttctcggggcattgtgaccaagaat
ggccttcttccattgcttccgcctgtgtgtttcatgtctctctggggctt
atactttccaagggaacacggtttaagtctttttaaaaaaaaaggtttgc
ctaaattcggctgaatc
gaattcagagatctatctgcctctcttaagcacagaagttaaactagttg
gatgtaaccctgctatgaaattaccattcctacaacacctgggcctaacc
tccctctgtcctaggctgaccttgaactcagaaatctgcctgctttgtat
ctttctgacaagctgactcctaggatagctgcctttgatcctttagattt
atgacacccctcataactcatattacatctttatattttgcatagttaag
aaattacatgtattttgaactagtggagacatagccacatttgcaactcc
tggactcttgtcatttctaattctcatggagtcattaatattaactggga
ggactttcctctgaggaaggtaaaaatatatacgttattaaacaaacaaa
ctttaggcccatggcagccattgacactcgtggaggctcacacctggaag
gcaccctgtctcagcaacaagaaccttaattctatcctcctcagggccat
ggctcggcagcagaagagtgacaagaactggtgatatgtagagtttggga
tctaaacaaacaaaagcatttctgtaaaaggagactcatactagagtaac
tgcatgccaatattgaacatctttggtagctataagaacaccaacttttg
tacttgataattctcctgtattagggaagtaggaagctcagaatgagctc
taatatgactgttatatataggaaggatttcttgtcttatcaatagttta
gcctggaaaaaaattagagatagggtcattattgttttacataatggtaa
cattctaaaactggagaatgaaatagtaatacattggaaatcagttatgc
tattaaatggagtagaaacatccattagtaatatttacacagcacacatc
tcattttgttgtgttgatgaaaaggatgtttttatcatcttcatgcatgg
ttcagtttaggctgtccattcacagctggtactatcagtaaaatagggag
tgttatgcccatactgcagaacttcaaattctacatagagcatgctgagc
aaatccctcaaggcttattacacttattacaagaatcggcaggacctctc
actgtctcattgcgagtgtatcaaattgagagctgaaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_92059447_92060617
seq2: B6Ng01-024O12.b_43_1209 (reverse)

seq1  GATTCAGGCAGAAATTTAGGCAAAACCTCTTCTTTTAAAAAGACTTGAAC  50
      ||||||| |   ||||||||| |||||| || |||||||||||||| |||
seq2  GATTCAGCC--GAATTTAGGC-AAACCTTTTTTTTTAAAAAGACTTAAAC  47

seq1  AGGTGTCCCCTTGGGAAGGATAAGCCACAGAGAGACATGAAACACACAAG  100
        |||| ||||||| ||| ||||||| |||||||||||||||||||| ||
seq2  -CGTGTTCCCTTGGAAAGTATAAGCCCCAGAGAGACATGAAACACAC-AG  95

seq1  GCAGAAGCAATGGAAGATGGCCATCTTGGGTCACACTG-CCCGAGAAAGC  149
      || |||||||||||||| ||||||  | ||||||| || |||||||||||
seq2  GCGGAAGCAATGGAAGAAGGCCATTCTTGGTCACAATGCCCCGAGAAAGC  145

seq1  ATATAAAGCCTGTTCTCACATGCTTTTCCTGTTACCATTAAACATATACG  199
      |||| ||||||| ||||| ||||||||||   ||||| |||| | || ||
seq2  ATAT-AAGCCTGGTCTCAAATGCTTTTCCCTGTACCAATAAA-ACATTCG  193

seq1  ACAATCACTAGCAGATTTCTGCAGATCTACAAAG-ATGTAGTGATGCTAT  248
      |||||||||||||||||||||||||||| ||||| |||||||||||||||
seq2  ACAATCACTAGCAGATTTCTGCAGATCT-CAAAGAATGTAGTGATGCTAT  242

seq1  ATAGACAATTAGATGACTTCTTAATTCTTAATGATGATTCTATAAGAATT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACAATTAGATGACTTCTTAATTCTTAATGATGATTCTATAAGAATT  292

seq1  CTT-AAGATTATATCAGTATTCATTAAGCTCTTTTATAGTGGGACTGCTA  347
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAGATTATATCAGTATTCATTAAGCTCTTTTATAGTGGGACTGCTA  342

seq1  TTAGGTCCTTTCTGATATAAAATCTTCAATGAAAATTCTACCTGTCTCCC  397
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTAGGTCCTTTCTGATAT-AAATCTTCAATGAAAATTCTACCTGTCTCCC  391

seq1  ATGTGTCACCAA-TTAATTGCATCTTAGAGAGTAAGCAGACATCTACTAC  446
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCACCAATTTAATTGCATCTTAGAGAGTAAGCAGACATCTACTAC  441

seq1  TCAGATTCCAAGAGGCTGTAAAAATATTATAGGTGCTAGGAC-AAAAGAT  495
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCAGATTCCAAGAGGCTGTAAAAATATTATAGGTGCTAGGACAAAAAGAT  491

seq1  AAAATATCGAGTGGGATATCTATAAAAAATTCACTAATAACTTAGTTATG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATCGAGTGGGATATCTATAAAAAATTCACTAATAACTTAGTTATG  541

seq1  ATTTTTAACTCTCCATGAACCTTTTGAGCTGTGACAGGTGATAAATGTTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAACTCTCCATGAACCTTTTGAGCTGTGACAGGTGATAAATGTTT  591

seq1  AGCCGGATAATTATTTCTAATGGATATGAATGTAAACATTAAATGTTGTA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGGATAATTATTTCTAATGGATATGAATGTAAACATTAAATGTTGTA  641

seq1  AACTTCTTATTCAATTTATAATTTAAATTTATGTGTAAATTTGTGATGAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTTATTCAATTTATAATTTAAATTTATGTGTAAATTTGTGATGAA  691

seq1  CCTTTTACTATATGATCATGTATTCTGAAAGATGTATAAGTGCTGACGAC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTACTATATGATCATGTATTCTGAAAGATGTATAAGTGCTGACGAC  741

seq1  AAAGAAAAGAGACAGAACTGAGCTGAAGAGAACTTTTTGACATAACTGAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAGAGACAGAACTGAGCTGAAGAGAACTTTTTGACATAACTGAA  791

seq1  CTCAGGAAGGGTGATATTGCAGACATCAAGGGAATGGGTACTATTCAAAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGAAGGGTGATATTGCAGACATCAAGGGAATGGGTACTATTCAAAA  841

seq1  AGGAATGCCCCATAAGTGTAACCACGGCAAAACAGAAGAGTCTACATTGT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGCCCCATAAGTGTAACCACGGCAAAACAGAAGAGTCTACATTGT  891

seq1  CACTCGGTGGGCCGTGGGCATCATTGTAAACAAGCAAGTTAATAAGGGCA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCGGTGGGCCGTGGGCATCATTGTAAACAAGCAAGTTAATAAGGGCA  941

seq1  AGATTCTAGCCAAGAGGATCAATGTGCGGATTGAGCACATCAAGCTCTCA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCTAGCCAAGAGGATCAATGTGCGGATTGAGCACATCAAGCTCTCA  991

seq1  AATAGCAGAAACAGCTTCTTGAAGTGGGTGAAGGAGAACGACCAGAAGAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCAGAAACAGCTTCTTGAAGTGGGTGAAGGAGAACGACCAGAAGAA  1041

seq1  AGAGAAGCCAAAGAGAAGGGCACCTGGGTACAGTTGATGTGCCAGCCTGC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGCCAAAGAGAAGGGCACCTGGGTACAGTTGATGTGCCAGCCTGC  1091

seq1  ACCACCTATAGAAGCACACTTTGTGAGGACCAACAGAAAAGAGCCTGAGC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCTATAGAAGCACACTTTGTGAGGACCAACAGAAAAGAGCCTGAGC  1141

seq1  TGTTGGAGCCCATTCCATATGAATTC  1171
      ||||||||||||||||||||||||||
seq2  TGTTGGAGCCCATTCCATATGAATTC  1167

seq1: chr3_92032686_92033827
seq2: B6Ng01-024O12.g_79_1209

seq1  GATCTATCTGCCTCTCTTAAGCACAGAAGTTAAACTAGTTGGATGTAACC  50
      ||||||||||||||||                  ||||||||||||||||
seq2  GATCTATCTGCCTCTCNNNNNNNNNNNNNNNNNNCTAGTTGGATGTAACC  50

seq1  CTGCTATGAAATTACCATTCCTACAACACCTGGGCCTAACCTCCCTCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTATGAAATTACCATTCCTACAACACCTGGGCCTAACCTCCCTCTGT  100

seq1  CCTAGGCTGACCTTGAACTCAGAAATCTGCCTGCTTTGTATCTTTCTGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGCTGACCTTGAACTCAGAAATCTGCCTGCTTTGTATCTTTCTGAC  150

seq1  AAGCTGACTCCTAGGATAGCTGCCTTTGATCCTTTAGATTTATGACACCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGACTCCTAGGATAGCTGCCTTTGATCCTTTAGATTTATGACACCC  200

seq1  CTCATAACTCATATTACATCTTTATATTTTGCATAGTTAAGAAATTACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAACTCATATTACATCTTTATATTTTGCATAGTTAAGAAATTACAT  250

seq1  GTATTTTGAACTAGTGGAGACATAGCCACATTTGCAACTCCTGGACTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTGAACTAGTGGAGACATAGCCACATTTGCAACTCCTGGACTCTT  300

seq1  GTCATTTCTAATTCTCATGGAGTCATTAATATTAACTGGGAGGACTTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTCTAATTCTCATGGAGTCATTAATATTAACTGGGAGGACTTTCC  350

seq1  TCTGAGGAAGGTAAAAATATATACGTTATTAAACAAACAAACTTTAGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGAAGGTAAAAATATATACGTTATTAAACAAACAAACTTTAGGCC  400

seq1  CATGGCAGCCATTGACACTCGTGGAGGCTCACACCTGGAAGGCACCCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCAGCCATTGACACTCGTGGAGGCTCACACCTGGAAGGCACCCTGT  450

seq1  CTCAGCAACAAGAACCTTAATTCTATCCTCCTCAGGGCCATGGCTCGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCAACAAGAACCTTAATTCTATCCTCCTCAGGGCCATGGCTCGGCA  500

seq1  GCAGAAGAGTGACAAGAACTGGTGATATGTAGAGTTTGGGATCTAAACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGAGTGACAAGAACTGGTGATATGTAGAGTTTGGGATCTAAACAA  550

seq1  ACAAAAGCATTTCTGTAAAAGGAGACTCATACTAGAGTAACTGCATGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGCATTTCTGTAAAAGGAGACTCATACTAGAGTAACTGCATGCCA  600

seq1  ATATTGAACATCTTTGGTAGCTATAAGAACACCAACTTTTGTACTTGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGAACATCTTTGGTAGCTATAAGAACACCAACTTTTGTACTTGATA  650

seq1  ATTCTCCTGTATTAGGGAAGTAGGAAGCTCAGAATGAGCTCTAATATGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCCTGTATTAGGGAAGTAGGAAGCTCAGAATGAGCTCTAATATGAC  700

seq1  TGTTATATATAGGAAGGATTTCTTGTCTTATCAATAGTTTCGCCTGGAAA  750
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGTTATATATAGGAAGGATTTCTTGTCTTATCAATAGTTTAGCCTGGAAA  750

seq1  AAAATTAGAGATAGGGTCATTATTGTTTTACATAATGGTAACATTCTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAGAGATAGGGTCATTATTGTTTTACATAATGGTAACATTCTAAA  800

seq1  ACTGGAGAATGAAATAGTAATACATTGGAAATCAGTTATGCTATTAAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGAATGAAATAGTAATACATTGGAAATCAGTTATGCTATTAAATG  850

seq1  GAGTAGAAACATCCATTAGTAATATTTACACAGCACACATCTCATTTTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGAAACATCCATTAGTAATATTTACACAGCACACATCTCATTTTGT  900

seq1  TGTGTTGATGAAAAGGATGTTTTTATCATCTTCATGCATGGTTCAGTTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTGATGAAAAGGATGTTTTTATCATCTTCATGCATGGTTCAGTTTA  950

seq1  GACTGTCCATTCACAGCTGGTACTATCAGTAAAGTAGAGAGTGTTATGCC  1000
      | ||||||||||||||||||||||||||||||| ||| ||||||||||||
seq2  GGCTGTCCATTCACAGCTGGTACTATCAGTAAAATAGGGAGTGTTATGCC  1000

seq1  CAGACTGCAGACACCTCAAAATCTACCATAGAGCCAATGCTGAAGCAAAT  1050
      || |||||||| || ||||| |||| ||||||||  |||||| |||||||
seq2  CATACTGCAGA-ACTTCAAATTCTA-CATAGAGC--ATGCTG-AGCAAAT  1045

seq1  CACTCAAGGGCCTTTTATTACAACTATTACAAGATCGGGCAGGAACTCTC  1100
      | |||||||     ||||||||  ||||||||||   ||||||| |||||
seq2  CCCTCAAGG----CTTATTACACTTATTACAAGAATCGGCAGGACCTCTC  1091

seq1  ACTGTCTCCATTGC-AGTGTATCCAAAATGAGAGCTGAGAACT  1142
      ||||||| |||||| ||||||| |||| |||||||||| ||||
seq2  ACTGTCT-CATTGCGAGTGTAT-CAAATTGAGAGCTGA-AACT  1131