BAC Information

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BAC

Clone NameB6Ng01-024P17
Chromosome3 (Build37)
Map Location 112,950,828 - 113,059,777
singlet/doubletdoublet
Overlap geneOTTMUSG00000022462, LOC668723, Amy2-2, Amy2-1
Upstream geneEG229746, LOC668717, Utp14B-ps, EG433643
Downstream geneLOC100043684, LOC100043686, LOC100043688, LOC100043207, Amy1, Rnpc3, Col11a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024P17.bB6Ng01-024P17.g
ACCDH856458DH856459
length1,139979
definitionDH856458|Mus musculus domesticus DNA, BAC clone: B6Ng01-024P17, 5' end.DH856459|Mus musculus domesticus DNA, BAC clone: B6Ng01-024P17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,950,828 - 112,951,985)(113,058,789 - 113,059,777)
sequence
gaattcaacccagttaactgcagaaagatccattatgaattctccacaga
attgtaagtccccgaaccttgtgctatagaacagtaagaactcagagctc
agtaaaagaatcagagcaccaagactgtgtcagctggagcaagcaaattc
tctatccccaagtcattattttatatgtctatttgtttcaccacctgtag
tgaccagagacacacagagaattcagagaagctcagcactaaagttcttc
tgtgattgtcttcatttccagtctgtcctctgctggattaaactctgatt
aactttttaatggcattcattcttcaaaggttcttagatcacatgatgcc
agatgattttttctcaaattaaacataatctagcatttctattaatacat
acatgtttgtagtagaaaacggtttacgtaaagtaatcctagttctaaaa
aaaatacaagttctcattcagaaaaaaataaaactgttatgtacttcaat
ttttttgttgttgccaataaaacatgatttagataaaaaaagaaaaatat
ttacaaccagaaagaaagctgatttagagttgaaacagttcactgtctcc
caaaaagattctctgagatacaatgcttttttgatttgttttgtttgtga
gatgaggcctctctacccagccagccatgactgtactgaaattattttgc
agatcaagatgggttcaaattcacagaaatagggctgcttcttcccccac
gtaacaagcaacaatactggtattggatcttgagtactacagaagagaga
gtcataaaggaagtctcagaagtactactagttaaagaacaagaatgaag
gtttaaagcctgagtaaacaaccgattgaagaaactcatacaccaaatgc
aagtacacaaatgctttaaaatttgtaaacatgtacgtacataattgaag
acccaatataagcatatggattaatatataagttatatcaaaggtatggg
aaagccctcagtactagtttggcacattttatgatgttgaataaattact
atttattacttgtaatgtgtggaaacaagctgtagtatgaataatgccac
ggcatgtacattaagggttaagaacaagtccttgttggg
gaattcccagcagttccatactctgcttgggactttaacgataataaatg
taatggagaaattgataactacaatgatgcttatcaggtaatgagagaaa
tgatggaaataaagaatatgtttctacatatgcacagaaatttatgaaat
gctattggacacaggaaaaaagaatgctattaatacagaatgctaaataa
tagaaaggaaaaatgtcctgtattatttttacattattttgtaaggatac
actagggttaatgataaaggcagaaatgctttcttgaaaatgtgtctgaa
aaagcgtgttttaatcaattatataaatatggtaaaatggaaatcattag
aaatacaaatcatatatagaaacaattttcagactgagttacagtctcca
ttttgtagcagtgtacttaacatgagttacttcttggctttgattttttc
acctatgtaaaataaagagaaatgatggaagaataaaagagaaatggaga
aggaaatgtggagagaacgagagagagagagacagagagagagagagaga
cagagacagagacagagactgaaagaagagggagtctcagaaatgaaaat
aggccaactaagatactcatctattttaatctctgacatattctttatat
ttacaacaacaaaaaatagtttgcatccacattagaacatgaatacattc
tatgtcccaattaaaacccatattaaatttgctattgataaatgtgtaat
tggctgaatgagaaatgaattctcaggcagaattgacatatttataaatt
caatcattttctcccaacaagtcagaaaattgtcgtcttgactggcttct
ggatttgccactgagaaagattatgttcgtaccaaggtggctgaactata
tgaacatctcatgactggaatagcaagtcagacttgatgctgctaagcaa
ttgtggctgaacataaggcagttggacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_112950828_112951985
seq2: B6Ng01-024P17.b_43_1181

seq1  GAATTCAACCCAGTTAACTGCAGAAAGATCCATTATGAATTCTCCACAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCCAGTTAACTGCAGAAAGATCCATTATGAATTCTCCACAGA  50

seq1  ATTGTAAGTCCCCGAACCTTGTGCTATAGAACAGTAAGAACTCAGAGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAAGTCCCCGAACCTTGTGCTATAGAACAGTAAGAACTCAGAGCTC  100

seq1  AGTAAAAGAATCAGAGCACCAAGACTGTGTCAGCTGGAGCAAGCAAATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAAGAATCAGAGCACCAAGACTGTGTCAGCTGGAGCAAGCAAATTC  150

seq1  TCTATCCCCAAGTCATTATTTTATATGTCTATTTGTTTCACCACCTGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCCCCAAGTCATTATTTTATATGTCTATTTGTTTCACCACCTGTAG  200

seq1  TGACCAGAGACACACAGAGAATTCAGAGAAGCTCAGCACTAAAGTTCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAGAGACACACAGAGAATTCAGAGAAGCTCAGCACTAAAGTTCTTC  250

seq1  TGTGATTGTCTTCATTTCCAGTCTGTCCTCTGCTGGATTAAACTCTGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTGTCTTCATTTCCAGTCTGTCCTCTGCTGGATTAAACTCTGATT  300

seq1  AACTTTTTAATGGCATTCATTCTTCAAAGGTTCTTAGATCACATGATGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTTAATGGCATTCATTCTTCAAAGGTTCTTAGATCACATGATGCC  350

seq1  AGATGATTTTTTCTCAAATTAAACATAATCTAGCATTTCTATTAATACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGATTTTTTCTCAAATTAAACATAATCTAGCATTTCTATTAATACAT  400

seq1  ACATGTTTGTAGTAGAAAACGGTTTACGTAAAGTAATCCTAGTTCTAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTTTGTAGTAGAAAACGGTTTACGTAAAGTAATCCTAGTTCTAAAA  450

seq1  AAAATACAAGTTCTCATTCAGAAAAAAATAAAACTGTTATGTACTTCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACAAGTTCTCATTCAGAAAAAAATAAAACTGTTATGTACTTCAAT  500

seq1  TTTTTTGTTGTTGCCAATAAAACATGATTTAGATAAAAAAAGAAAAATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTTGTTGCCAATAAAACATGATTTAGATAAAAAAAGAAAAATAT  550

seq1  TTACAACCAGAAAGAAAGCTGATTTAGAGTTGAAACAGTTCACTGTCTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAACCAGAAAGAAAGCTGATTTAGAGTTGAAACAGTTCACTGTCTCC  600

seq1  CAAAAAGATTCTCTGAGATACAATGCTTTTTTGATTTGTTTTGTTTGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGATTCTCTGAGATACAATGCTTTTTTGATTTGTTTTGTTTGTGA  650

seq1  GATGAGGCCTCTCTACCCAGCCAGCCATGACTGTACTGAAATTATTTTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGGCCTCTCTACCCAGCCAGCCATGACTGTACTGAAATTATTTTGC  700

seq1  AGATCAAGATGGGTTCAAATTCACAGAAATAGGGCTGCTTCTTCCCCCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAAGATGGGTTCAAATTCACAGAAATAGGGCTGCTTCTTCCCCCAC  750

seq1  GTAACAAGCAACAATACTGGTATTGGATCTTGAGTACTACAGAAGAGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAAGCAACAATACTGGTATTGGATCTTGAGTACTACAGAAGAGAGA  800

seq1  GTCATAAAGGAAGTCTCAGAAGTACTACTAGTTAAAGAACAAGAATGAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAAAGGAAGTCTCAGAAGTACTACTAGTTAAAGAACAAGAATGAAG  850

seq1  GTTTTAAAGCCTGAGTAAACAACCGATTGAAGAAACTCATACACCAAATG  900
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  G-TTTAAAGCCTGAGTAAACAACCGATTGAAGAAACTCATACACCAAATG  899

seq1  CAAGTACACAAATGCTTTTAAAATTTGTAAAACATGTACGTACATAATTG  950
      ||||||||||||||| |||||||||||| |||||||||||||||||||||
seq2  CAAGTACACAAATGC-TTTAAAATTTGT-AAACATGTACGTACATAATTG  947

seq1  AAGACCCAATATAAGCATAATGGATTAATATATAAGTTATAATCAAAGGT  1000
      |||||||||||||||||| ||||||||||||||||||||| |||||||||
seq2  AAGACCCAATATAAGCAT-ATGGATTAATATATAAGTTAT-ATCAAAGGT  995

seq1  AATGGGAAAAGCACTCCAGTACTAGTATGGCACATTTTTAATGATGTTGA  1050
       ||||| ||||| || |||||||||| |||||||||||  ||||||||||
seq2  -ATGGG-AAAGCCCT-CAGTACTAGTTTGGCACATTTT--ATGATGTTGA  1040

seq1  TATATATTTACTATTTATATACTTGTAAAATGTGTGAAACAAGCTTGTAA  1100
       ||| | ||||||||||| |||||||||  |||| ||||||||| ||| |
seq2  -ATA-AATTACTATTTAT-TACTTGTAATGTGTG-GAAACAAGC-TGT-A  1084

seq1  GTATGAATATATGCTACTGTCATTGTACATTATGGTTAAAGATCAAGTTC  1150
      ||||||||| |||| || | || ||||||||| || | |||| ||||| |
seq2  GTATGAATA-ATGCCAC-GGCA-TGTACATTAAGGGTTAAGAACAAGTCC  1131

seq1  TTGTTGGG  1158
      ||||||||
seq2  TTGTTGGG  1139

seq1: chr3_113058789_113059777
seq2: B6Ng01-024P17.g_69_1047 (reverse)

seq1  TTGTCCAAAACTGCCTTTATGTCTCCAGGCCACATGTGCTTAGCAGCATC  50
      ||||||  ||||||| |||||| ||   ||||||  ||||||||||||||
seq2  TTGTCC--AACTGCC-TTATGT-TC--AGCCACAATTGCTTAGCAGCATC  44

seq1  AAGTCTGAACCCTGCTACTCCAATGTCAATGAGATGGTTCATATAG-TCA  99
      ||||||||  | ||||| ||||  ||| ||||||| |||||||||| |||
seq2  AAGTCTGA--CTTGCTATTCCA--GTC-ATGAGAT-GTTCATATAGTTCA  88

seq1  GCCACCTTGGTACGAACATAATCTTTCTCAAGTGCAAGATCCAGAAGGCC  149
      ||||||||||||||||||||||||||||| ||||  | |||||||| |||
seq2  GCCACCTTGGTACGAACATAATCTTTCTC-AGTGGCAAATCCAGAA-GCC  136

seq1  AGTC-AGACGACAA-TTTCTGACCTGTTGGGAGAAAATGATTG-ATTTAT  196
      |||| ||||||||| |||||||| ||||||||||||||||||| ||||||
seq2  AGTCAAGACGACAATTTTCTGACTTGTTGGGAGAAAATGATTGAATTTAT  186

seq1  -AATATGTCATTTCTGCCTGAGAATTCATTTCCTCATTCAGCCATTTACA  245
       ||||||||| |||||||||||||||||||| |||||||||||| |||||
seq2  AAATATGTCAATTCTGCCTGAGAATTCATTT-CTCATTCAGCCAATTACA  235

seq1  CATTTATCAATAGCAAATTTTATATGGGTTTTAATTGGGACATAGAATGT  295
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CATTTATCAATAGCAAATTTAATATGGGTTTTAATTGGGACATAGAATGT  285

seq1  ATTCATGTTCTAATGTGGATGCAAACTATTTTTTGTTGTTGTAAATATAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATGTTCTAATGTGGATGCAAACTATTTTTTGTTGTTGTAAATATAA  335

seq1  AGAATATGTCAGAGATTAAAATAGATGAGTATCTTAGTTGGCCTATTTTC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATGTCAGAGATTAAAATAGATGAGTATCTTAGTTGGCCTATTTTC  385

seq1  ATTTCTGAGACTCCCTCTTCTTTCAGTCTCTGTCTCTGTCTCTGTCTCTC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGAGACTCCCTCTTCTTTCAGTCTCTGTCTCTGTCTCTGTCTCTC  435

seq1  TCTCTCTCTCTGTCTCTCTCTCTCTCGTTCTCTCCACATTTCCTTCTCCA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTGTCTCTCTCTCTCTCGTTCTCTCCACATTTCCTTCTCCA  485

seq1  TTTCTCTTTTATTCTTCCATCATTTCTCTTTATTTTACATAGGTGAAAAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTTTATTCTTCCATCATTTCTCTTTATTTTACATAGGTGAAAAA  535

seq1  ATCAAAGCCAAGAAGTAACTCATGTTAAGTACACTGCTACAAAATGGAGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAGCCAAGAAGTAACTCATGTTAAGTACACTGCTACAAAATGGAGA  585

seq1  CTGTAACTCAGTCTGAAAATTGTTTCTATATATGATTTGTATTTCTAATG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAACTCAGTCTGAAAATTGTTTCTATATATGATTTGTATTTCTAATG  635

seq1  ATTTCCATTTTACCATATTTATATAATTGATTAAAACACGCTTTTTCAGA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCATTTTACCATATTTATATAATTGATTAAAACACGCTTTTTCAGA  685

seq1  CACATTTTCAAGAAAGCATTTCTGCCTTTATCATTAACCCTAGTGTATCC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTTCAAGAAAGCATTTCTGCCTTTATCATTAACCCTAGTGTATCC  735

seq1  TTACAAAATAATGTAAAAATAATACAGGACATTTTTCCTTTCTATTATTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAAATAATGTAAAAATAATACAGGACATTTTTCCTTTCTATTATTT  785

seq1  AGCATTCTGTATTAATAGCATTCTTTTTTCCTGTGTCCAATAGCATTTCA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTCTGTATTAATAGCATTCTTTTTTCCTGTGTCCAATAGCATTTCA  835

seq1  TAAATTTCTGTGCATATGTAGAAACATATTCTTTATTTCCATCATTTCTC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTCTGTGCATATGTAGAAACATATTCTTTATTTCCATCATTTCTC  885

seq1  TCATTACCTGATAAGCATCATTGTAGTTATCAATTTCTCCATTACATTTA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTACCTGATAAGCATCATTGTAGTTATCAATTTCTCCATTACATTTA  935

seq1  TTATCGTTAAAGTCCCAAGCAGAGTATGGAACTGCTGGGAATTC  989
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCGTTAAAGTCCCAAGCAGAGTATGGAACTGCTGGGAATTC  979