BAC Information

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BAC

Clone NameB6Ng01-025A02
Chromosome3 (Build37)
Map Location 86,405,490 - 86,506,153
singlet/doubletdoublet
Overlap geneLrba, LOC100042319
Upstream genePet112l, 9930021J17Rik, Glt28d2, LOC100042265, Gm1019, Sh3d19, Rps3a, LOC634201, Mab21l2, EG667024
Downstream geneDclk2, EG625055, Cd1d2, Cd1d1, LOC667897, Kirrel1, LOC100042355, Msr2, Cd5l, Fcrl1, Fcrl5, Etv3, EG546801, Arhgef11, EG625281
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025A02.bB6Ng01-025A02.g
ACCDH856474DH856475
length1,043697
definitionDH856474|Mus musculus domesticus DNA, BAC clone: B6Ng01-025A02, 5' end.DH856475|Mus musculus domesticus DNA, BAC clone: B6Ng01-025A02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,405,490 - 86,406,542)(86,505,287 - 86,506,153)
sequence
gaattccaaatactatggttgctatttattatatgattttgtgcttcttt
ttgccaaattattcagaaaacaatattgtgttactgagtgagtaaaacca
ctgaaattaggaagtgtttgaaagtgaatgtggctagactagtttactaa
tagtatgttccttaaatagaccttaatttcaattatatagactcctcctt
cttgatttttttatatgcagactttgtgtaactatttcctatattttaga
taaaatacttttccacctaaaattttcccttcttgaataatgttaaaata
tttaaattttactgaaggtattttgtttgtaacaaggcctcccctctttg
ctcctttcctaagtgaaacaaacatagctttaaatatttctaatcttttt
tttttaagtataaataagatatcatctagttggggtaaaaattgtgagtt
tctatttttattcttttttgaggatgagacaagattttggtgaaataaaa
tgctttatgttaaagctaaaattaactgtagcatggtaaaagaattttct
gatgtaattttggaaagctatagatgtagtgtatcaaaaaattcatgtat
ttttagagaatatgatatataccctttcatagaagctacatttggctttt
aataggaagaaatttagtatatttgtatattatatgtaaatattgatttt
tttattctaacatactcactttaagatttaatatataaatcagctttgtt
aaactaattatttttaaaagttaaattcagtaataactctaaaaaatata
aaacaaagtggtaagaattcagagagaaggctgtgggcttaggctttcaa
gctattctagagtctgggttataactgccgagcaatggtaatgatacggt
tgccatagcaactgattcattggagggcttagacctctgtctagggggct
gtcagtatatgtagagttcagtgacagaaactcccaagaaggtctgcttc
tactaatcagtttatttgactctgagatttgaagtgaagcctc
gaattcatggagttaaaattttatatttcatcttgatacaaaccacttca
aatgaaactgttgtatggaaagaataaaaaatctcatgtctcttccaaat
taggtagacattttcatttacccttccagacatatatctatttgtaaatt
tttggataatattctaagtattttcatataactatgccaaacaaactatg
caatagttacatttgtccttcatttttagaaatgacataaacattttgtt
ttctgactctagtatctcttaaatgagatctgataattgcttttaaatta
aactactagacctgataaaaataagtaactgcttagagtcttacaaattt
cccacaactccaggtcacttgggaaaacacccagagtgcttaaaatcaga
gttggaaccgctatagagttagaactggatcaagaactcaaatgtgttta
atccataaaccccattttcctcctttgttgttaaaaaatataactcttct
tagtaggatctctacaaggcagtgggatcccactcaaaggatgctgctaa
aatgtcaggatccagcagggatctgagtagcaacgaccacatttacattt
ctcctaaacatttaggtgaaaagacagacagcatggtaagagttaattga
aacattcctgttggagcgggactgaggagtgggggtagggggagggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_86405490_86406542
seq2: B6Ng01-025A02.b_46_1088

seq1  GAATTCCAAATACTATGGTTGCTATTTATTATATGATTTTGTGCTTCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAATACTATGGTTGCTATTTATTATATGATTTTGTGCTTCTTT  50

seq1  TTGCCAAATTATTCAGAAAACAATATTGTGTTACTGAGTGAGTAAAACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAAATTATTCAGAAAACAATATTGTGTTACTGAGTGAGTAAAACCA  100

seq1  CTGAAATTAGGAAGTGTTTGAAAGTGAATGTGGCTAGACTAGTTTACTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATTAGGAAGTGTTTGAAAGTGAATGTGGCTAGACTAGTTTACTAA  150

seq1  TAGTATGTTCCTTAAATAGACCTTAATTTCAATTATATAGACTCCTCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATGTTCCTTAAATAGACCTTAATTTCAATTATATAGACTCCTCCTT  200

seq1  CTTGATTTTTTTATATGCAGACTTTGTGTAACTATTTCCTATATTTTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATTTTTTTATATGCAGACTTTGTGTAACTATTTCCTATATTTTAGA  250

seq1  TAAAATACTTTTCCACCTAAAATTTTCCCTTCTTGAATAATGTTAAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATACTTTTCCACCTAAAATTTTCCCTTCTTGAATAATGTTAAAATA  300

seq1  TTTAAATTTTACTGAAGGTATTTTGTTTGTAACAAGGCCTCCCCTCTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATTTTACTGAAGGTATTTTGTTTGTAACAAGGCCTCCCCTCTTTG  350

seq1  CTCCTTTCCTAAGTGAAACAAACATAGCTTTAAATATTTCTAATCTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTCCTAAGTGAAACAAACATAGCTTTAAATATTTCTAATCTTTTT  400

seq1  TTTTTAAGTATAAATAAGATATCATCTAGTTGGGGTAAAAATTGTGAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAGTATAAATAAGATATCATCTAGTTGGGGTAAAAATTGTGAGTT  450

seq1  TCTATTTTTATTCTTTTTTGAGGATGAGACAAGATTTTGGTGAAATAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTTTATTCTTTTTTGAGGATGAGACAAGATTTTGGTGAAATAAAA  500

seq1  TGCTTTATGTTAAAGCTAAAATTAACTGTAGCATGGTAAAAGAATTTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTATGTTAAAGCTAAAATTAACTGTAGCATGGTAAAAGAATTTTCT  550

seq1  GATGTAATTTTGGAAAGCTATAGATGTAGTGTATCAAAAAATTCATGTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTAATTTTGGAAAGCTATAGATGTAGTGTATCAAAAAATTCATGTAT  600

seq1  TTTTAGAGAATATGATATATACCCTTTCATAGAAGCTACATTTGGCTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGAGAATATGATATATACCCTTTCATAGAAGCTACATTTGGCTTTT  650

seq1  AATAGGAAGAAATTTAGTATATTTGTATATTATATGTAAATATTGATTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGAAGAAATTTAGTATATTTGTATATTATATGTAAATATTGATTTT  700

seq1  TTTATTCTAACATACTCACTTTAAGATTTAATATATAAATCAGCTTTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCTAACATACTCACTTTAAGATTTAATATATAAATCAGCTTTGTT  750

seq1  AAAACTAATTATTTTTAAAAGTTAAATTCAGTAATAACTCTAAAAATTAT  800
       ||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  -AAACTAATTATTTTTAAAAGTTAAATTCAGTAATAACTCTAAAAAATAT  799

seq1  AAAACAAAGTGGTAAGAATTCAGAGAGAAGGCTGTGGGCTTAGGCTTTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAGTGGTAAGAATTCAGAGAGAAGGCTGTGGGCTTAGGCTTTCA  849

seq1  AGCTATTCTAGAGTCTGGGTTATAACTGCCGAGCAATGGTAATGATACGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATTCTAGAGTCTGGGTTATAACTGCCGAGCAATGGTAATGATACGG  899

seq1  TTGCCATAGCAACTGATTCATTGGAGGGC-TAGACCTCTGTCTAGGGTGC  949
      ||||||||||||||||||||||||||||| ||||||||||||||||| ||
seq2  TTGCCATAGCAACTGATTCATTGGAGGGCTTAGACCTCTGTCTAGGGGGC  949

seq1  TGTCAGTATATGTAGAGTTCCAGTGAACAGAAACTCCCAAAGAAGGGTCT  999
      ||||||||||||||||||| ||||| |||||||||||| ||||| |||||
seq2  TGTCAGTATATGTAGAGTT-CAGTG-ACAGAAACTCCC-AAGAA-GGTCT  995

seq1  GCTTCTACCTAATCCAGTTTTAATTGAACTCTAGAGACTTTGAAGTGAAG  1049
      ||||||| ||||| ||||||  |||  ||||| |||| ||||||||||||
seq2  GCTTCTA-CTAAT-CAGTTT--ATTTGACTCT-GAGA-TTTGAAGTGAAG  1039

seq1  CCTC  1053
      ||||
seq2  CCTC  1043

seq1: chr3_86505287_86506153
seq2: B6Ng01-025A02.g_66_762 (reverse)

seq1  ACCCTCCTCTTATGGCTAGCTGCATTCTGTCATGGGGTGGCATCTTTTGA  50
                                                        
seq2  --------------------------------------------------  0

seq1  AGCCAGTTAAGTTTGAAAACCACTGCAGGGTACTTGAGGCTCATTAGTGA  100
                                                        
seq2  --------------------------------------------------  0

seq1  GGCCTATCCATGCCTGGCTTTGGATTTGCCCCCTGATTAACTCTGCATCT  150
                                                        
seq2  --------------------------------------------------  0

seq1  CCCAGCCTCGCTCCCCCTCCCACCCT-CCCCTACCCCCACTCCTCAGTCC  199
                           ||||| |||||||||||||||||||||||
seq2  ---------------------ACCCTCCCCCTACCCCCACTCCTCAGTCC  29

seq1  CGCTCCAACAGGAATGTTTCAATTAACTCTTACCATGCTGTCTGTCTTTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCCAACAGGAATGTTTCAATTAACTCTTACCATGCTGTCTGTCTTTT  79

seq1  CACCTAAATGTTTAGGAGAAATGTAAATGTGGTCGTTGCTACTCAGATCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTAAATGTTTAGGAGAAATGTAAATGTGGTCGTTGCTACTCAGATCC  129

seq1  CTGCTGGATCCTGACATTTTAGCAGCATCCTTTGAGTGGGATCCCACTGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGATCCTGACATTTTAGCAGCATCCTTTGAGTGGGATCCCACTGC  179

seq1  CTTGTAGAGATCCTACTAAGAAGAGTTATATTTTTTAACAACAAAGGAGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAGAGATCCTACTAAGAAGAGTTATATTTTTTAACAACAAAGGAGG  229

seq1  AAAATGGGGTTTATGGATTAAACACATTTGAGTTCTTGATCCAGTTCTAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGGGTTTATGGATTAAACACATTTGAGTTCTTGATCCAGTTCTAA  279

seq1  CTCTATAGCGGTTCCAACTCTGATTTTAAGCACTCTGGGTGTTTTCCCAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATAGCGGTTCCAACTCTGATTTTAAGCACTCTGGGTGTTTTCCCAA  329

seq1  GTGACCTGGAGTTGTGGGAAATTTGTAAGACTCTAAGCAGTTACTTATTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCTGGAGTTGTGGGAAATTTGTAAGACTCTAAGCAGTTACTTATTT  379

seq1  TTATCAGGTCTAGTAGTTTAATTTAAAAGCAATTATCAGATCTCATTTAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAGGTCTAGTAGTTTAATTTAAAAGCAATTATCAGATCTCATTTAA  429

seq1  GAGATACTAGAGTCAGAAAACAAAATGTTTATGTCATTTCTAAAAATGAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATACTAGAGTCAGAAAACAAAATGTTTATGTCATTTCTAAAAATGAA  479

seq1  GGACAAATGTAACTATTGCATAGTTTGTTTGGCATAGTTATATGAAAATA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAATGTAACTATTGCATAGTTTGTTTGGCATAGTTATATGAAAATA  529

seq1  CTTAGAATATTATCCAAAAATTTACAAATAGATATATGTCTGGAAGGGTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAATATTATCCAAAAATTTACAAATAGATATATGTCTGGAAGGGTA  579

seq1  AATGAAAATGTCTACCTAATTTGGAAGAGACATGAGATTTTTTATTCTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAATGTCTACCTAATTTGGAAGAGACATGAGATTTTTTATTCTTT  629

seq1  CCATACAACAGTTTCATTTGAAGTGGTTTGTATCAAGATGAAATATAAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACAACAGTTTCATTTGAAGTGGTTTGTATCAAGATGAAATATAAAA  679

seq1  TTTTAACTCCATGAATTC  867
      ||||||||||||||||||
seq2  TTTTAACTCCATGAATTC  697